D1Rat5 Marker Search Result - Rat Genome Database

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Marker: D1Rat5

Symbol: D1Rat5
Previously known as: oxsts6710; R031-A10; R0031-A10; 
RGD ID: 36137
Expected Size: 162 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2110,435,339 - 10,435,501 (+)MAPPERmRatBN7.2
Rnor_6.0110,259,237 - 10,259,398NCBIRnor6.0
Rnor_5.0111,871,737 - 11,871,898UniSTSRnor5.0
RGSC_v3.4110,818,666 - 10,818,827UniSTSRGSC3.4
RGSC_v3.4110,818,665 - 10,818,827RGDRGSC3.4
Celera18,906,331 - 8,906,492UniSTS
RGSC_v3.1110,818,666 - 10,818,827RGD
RH 3.4 Map1131.1RGD
RH 3.4 Map1131.1UniSTS
RH 2.0 Map129.3RGD
SHRSP x BN Map111.49RGD
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer CTCCCTTCCTCCTAACCCC
Reverse Primer TGGAAATCCACTGAGAGGTCTT
 
Template 
AGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACAAGAATGACAGTCAGGCCCTGATGT
CTCCTTGGATAAACAGAAAGAACTAAATATCTGGAAATCCACTGAGAGGTCTTAGAAGGACCTT
CCTTTAACATTCTATTAGGTGTGGAACTACCAGCATTCACTAAGCCTCTACTTGATTCTGCAAA
ACAAACAACACACACACACACACACACACACACACACACACGGGGGGGGGTTAGGAGGAAGGGA
GAGAGAGAGGCAGAGAGAGAGAGAGACAGAGACAGAGACAGAGAGAGAGAGAAATTCCCAGTGG
GTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCA
CAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAG
CTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACTGTCGTGCCAGC
TGCATTATGAATCGGCACGCGCGGGGAGAGGCGGTTTCGTATTGGGCGC

Region

Nucleotide Sequences
GenBank Nucleotide CH473994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information