D14Rat6 Marker Search Result - Rat Genome Database

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Marker: D14Rat6

Symbol: D14Rat6
Previously known as: oxsts6236; R028-C06; R0028-C06; 
RGD ID: 35965
Expected Size: 174 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21414,875,168 - 14,875,342 (+)MAPPERmRatBN7.2
Rnor_6.01416,336,988 - 16,337,161NCBIRnor6.0
Rnor_5.01416,262,980 - 16,263,153UniSTSRnor5.0
RGSC_v3.41416,432,792 - 16,432,965UniSTSRGSC3.4
RGSC_v3.41416,432,517 - 16,433,064RGDRGSC3.4
Celera1414,277,653 - 14,277,826UniSTS
RGSC_v3.11416,432,792 - 16,432,965RGD
RH 3.4 Map14170.7RGD
RH 3.4 Map14170.7UniSTS
RH 2.0 Map14196.2RGD
SHRSP x BN Map146.9RGD
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo
QTLs:   Srn2   Srn3  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer TTGTCTTGTGATGTTCTGTCAGG
Reverse Primer CAGGAACCAACTCATTTGCA
 
Template 
ACNCAGAGGATCCCCTTCTAAGGGATAATAAAAGAAGATACAGCAAAAACTGTCATATTCAAAT
AGGATGAGACAGAAGAAAAAGAGCCCAAGAAAGGCACAAGAAACAGATGCAGGAACCAACTCAT
TTGCACACTCAGGAATCCCATAATACACACACACACACACACACACACACACACACACACACAC
ACACACATGGATACTCTAGTGAGAGAATGAATATAAAATTTTTTTAAAAAATTAAAGCTTTAAG
AAAAAAGTCCTGACAGAACATCACAAGACAAGGAACCTCTAAGCCCTAAGCCAGTGGTTCTCAA
CCTTCCTAACGCTGTGACCCCTTAATACAGTCGCTCATGTTGAGGTGATCCCCAAACCATAAAG
GTATTCTCCCCTCCTCACAAAGGGGCCATGGCTATAGTTTGGGAACACCACTCTAAACCATTTA
GTTCATTTTCTTCTGGCCATCTATTCTGGAATGTGACTACCTTNAAGTNGTTTGTTCTCCATGA
GATGCTCTTGGGGAAAAACCTAAATTTTCATTTGTAAG

Region

Nucleotide Sequences
GenBank Nucleotide JH618033.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 444913 UniSTS
  444939 UniSTS