D13Rat21 Marker Search Result - Rat Genome Database

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Marker: D13Rat21

Symbol: D13Rat21
Previously known as: oxsts6126; R020-A06; R0020-A06; 
RGD ID: 35543
Expected Size: 150 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21342,356,636 - 42,356,786 (+)MAPPERmRatBN7.2
Rnor_6.01347,621,999 - 47,622,148NCBIRnor6.0
Rnor_5.01352,710,663 - 52,710,812UniSTSRnor5.0
RGSC_v3.41343,835,058 - 43,835,207UniSTSRGSC3.4
RGSC_v3.41343,835,057 - 43,835,207RGDRGSC3.4
Celera1342,706,106 - 42,706,255UniSTS
RGSC_v3.11343,849,101 - 43,849,250RGD
RH 3.4 Map13112.4UniSTS
RH 3.4 Map13112.4RGD
RH 2.0 Map13306.3RGD
SHRSP x BN Map1310.2499RGD
Cytogenetic Map13q13UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo
QTLs:   Lnnr4  
Genes:   Il24  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer ACCCTGAAGTCAGCCTCTGA
Reverse Primer ACCACAGCATTTCTCTCGCT
 
Template 
CATGCCTGCAGGTCGACTCTAGAGGATCCCCCTTGTCTGCATTGAAGAAAGGGCCCGTGCTCCT
GCTGAAGAAAGGAAGGCCTTACCCTGAAGTCAGCCTCTGACTCAGAACTTCACGAACGCACACA
CACACACACACACACACACACACACACACACACACACACACACGAACGCACAAAATGCTCCAAG
GGAGCACACAAATGAGATTCCCGAAGCGAGAGAAATGCTGTGGTTTGAATGTCTCCACCAAAAC
TCACATTTAGATTCACTTCCTCCGTCGGGGTATGTAGCAGTAGAACCTTTGAGAGGGGATTAGG
TTACGATCTCTGCCCTCTTGAACAAACCCATGAACATGAGGACTGTAGGTTGGCAGGATAGGGG
TACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCAC
AATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCTAATGAGTGACTA
ACTCACATTAATTGCGTTGGCTCACTGCCGCTTTCAGTCGGGAAACTGTCGTGCACTGCATTAA
TGAATCGGCACGCGGGGGAGAGCGGTTGGTATTGNCGCANGTGGTTTNCTTTTNACAGTGAGAG
GCACANTGNTCCTTNCGCTGNCTGGAAGTGACANGTCANTGTTCCACAGCGNACTTTNNGTGTC
GATGNAATCTTTAACAANANCGNTNGTATTNCATTGAANCCTTANATNNANNAGGNAAAGTTNG
GNCCNNTCTCCACNTTTGGGGGGCANNNNCNNNGCNTGTGNNNNNTNAANNANNNNNNNC

Region

Nucleotide Sequences
GenBank Nucleotide CH473958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 170819 UniSTS
  408172 UniSTS