D1Rat60 Marker Search Result - Rat Genome Database

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Marker: D1Rat60

Symbol: D1Rat60
Previously known as: oxsts6722; R006-B02; R0006-B02; 
RGD ID: 35413
Expected Size: 344 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21171,602,489 - 171,602,793 (+)MAPPERmRatBN7.2
Rnor_6.01186,936,140 - 186,936,447NCBIRnor6.0
Rnor_5.01193,894,362 - 193,894,669UniSTSRnor5.0
RGSC_v3.41175,476,682 - 175,477,048RGDRGSC3.4
RGSC_v3.41175,476,735 - 175,477,042UniSTSRGSC3.4
Celera1169,402,249 - 169,402,556UniSTS
RGSC_v3.11175,615,928 - 175,616,294RGD
RH 3.4 Map11563.31RGD
RH 3.4 Map11563.31UniSTS
SHRSP x BN Map186.8799RGD
SHRSP x BN Map186.8799UniSTS
FHH x ACI Map181.06RGD
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CCAGTAAGGCCACAACCCT
Reverse Primer TAGCCAGATGGCTCAGTGTG
 
Template 
TTGCTGCAGGTCGATCAGAGGATCCCCACTAATCCAGTAAGGCCACAACCCTGGGTCTTCCTGC
TTCATAGTCTTTTAAGTTTATCAAATCTATCTATCTGTCTGTCTGTCTGTCTATCTATCTATCT
ATCTATCTATCTATCTATCTATCTATCTATTGTGTGCCTGTGCGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAACATGTGCTATGGGGTGCACATGGAGGTCAG
AGGACAACTTATAGGAGTCAGTTAAGTCTCTCTTTCTACCCTGTGGTCCCCAGGGCTTGAACTC
CTGCTTACAAGCTTGGGGGCATGCTTGTTTACACACTGAGCCATCTGGCTAGCCCTGCCTCAGC
CTCTTGAGTGCTTGGTGAGTGCTCGGATTATGAGTATGTGGGTACCGAGCTCGAATTCGTAATC
ATGG

Region

Nucleotide Sequences
GenBank Nucleotide CH473956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information