D6Rat36 Marker Search Result - Rat Genome Database

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Marker: D6Rat36

Symbol: D6Rat36
Previously known as: oxsts7282; R018-C02; R0018-C02; 
RGD ID: 35390
Expected Size: 140 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2635,098,709 - 35,098,849 (+)MAPPERmRatBN7.2
Rnor_6.0637,608,980 - 37,609,119NCBIRnor6.0
Rnor_5.0650,735,827 - 50,735,966UniSTSRnor5.0
RGSC_v3.4635,883,625 - 35,883,996RGDRGSC3.4
RGSC_v3.4635,883,847 - 35,883,986UniSTSRGSC3.4
Celera634,463,599 - 34,463,738UniSTS
RGSC_v3.1635,886,800 - 35,886,939RGD
RH 3.4 Map6139.1RGD
RH 3.4 Map6139.1UniSTS
RH 2.0 Map6284.1RGD
FHH x ACI Map629.28RGD
Cytogenetic Map6q14UniSTS
Is Marker For: Strains:   AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo
QTLs:   Scl29   Slep2  
Genes:   Cyria  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer ACCTGAACATCCCCTCCC
Reverse Primer CTGATGGCATTTCAAGCAGA
 
Template 
AGGATCCCCCCTCCANCATGGGCACCTGAACATCCCCTCCCCACCACACACACACACACACACA
CACACACACACATGCATACATTCATACATGTAACACACCCAGGCACATAATACTGATACTGGAA
ACATCTGCTTGAAATGCCATCAGAAGAAGAGATTTGTCCATTTAGAGTCTATCCCAGACCTGTA
CTTATGGGTAGACAGAGCCCAGTAGCTTCCACAAAAGACGCCTCTGCAGGAAGCTTTGGGATAC
ACAAGAGAAGCAACACAGTCCCCAAGGAACTCCCCCCTGTTCAGATGAATGAACCAAGACCATG
ACGGAACCCAACAAACAAACCCTTGAAGTTTATCTCCGGATTTCTCCTCAGGGGGTACGAGCTC
GAATTCGTAATCATGGTCATAGCTGTTTCCT

Region

Nucleotide Sequences
GenBank Nucleotide CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 298890 UniSTS
  544525 UniSTS
  544557 UniSTS