D7Rat35 Marker Search Result - Rat Genome Database

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Marker: D7Rat35

Symbol: D7Rat35
Previously known as: oxsts7361; R008-A04; R0008-A04; 
RGD ID: 35237
Expected Size: 143 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8720,057,232 - 20,057,375 (+)Marker Load Pipeline
mRatBN7.2718,169,505 - 18,169,648 (+)MAPPERmRatBN7.2
Rnor_6.0724,175,337 - 24,175,479NCBIRnor6.0
Rnor_5.0724,326,613 - 24,326,755UniSTSRnor5.0
RGSC_v3.4720,307,479 - 20,307,622RGDRGSC3.4
RGSC_v3.4720,307,480 - 20,307,622UniSTSRGSC3.4
Celera715,401,260 - 15,401,400UniSTS
RGSC_v3.1720,322,993 - 20,323,136RGD
RH 2.0 Map774.9RGD
SHRSP x BN Map76.83RGD
FHH x ACI Map72.9199RGD
Cytogenetic Map7q13UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo ; F344.OLETF-(D7Rat31-D7Rat35)/Tj
QTLs:   Niddm31  
Genes:   Abtb3  


Annotation



Strains and Sequence

Sequence
 
Forward Primer TCTTCCCACCAATCCTTTTG
Reverse Primer CCCTATGTTCATTCAAGTAGCCC
 
Template 
TCCCCCCTCGGNTCATTCCTGGGTTTATAAATCATTAATTTTTGATCCTTTTATATTTTGGNGA
TTCATATATATGCATAAACATATACATATACACATACATATATAGTGTTCTTTAATCAAAGTCT
CCCTTATCATCTTCTCCTATGCCTTTCTTCTTCCCACCAATCCTTTTGTCCCAAGTCCCCCTGC
TACTCTCTGTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTTCTACCATATTTGAG
NGGGGCTACTTGAATGAACATAGGGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGT
TTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTG
TANAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAGTTGGCGTTGCGCTCACTGCNCGC
TTTCCAGTCGGGAGANTGTCGTGCCAGCTGCATTAATGAATCGGCAACGCGCGGGGAGAGGCGG
TTTG

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1308647Abtb3ankyrin repeat and BTB domain containing 371992288320199740Rat

Nucleotide Sequences
GenBank Nucleotide AC118318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 314675 UniSTS
  326533 UniSTS