DXRat5 Marker Search Result - Rat Genome Database

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Marker: DXRat5

Symbol: DXRat5
Previously known as: oxsts7606; R011-D04; R0011-D04; 
RGD ID: 35044
Expected Size: 173 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X12,949,007 - 12,949,182 (-)MAPPERmRatBN7.2
Rnor_6.0X13,948,736 - 13,948,908NCBIRnor6.0
Rnor_5.0X14,731,250 - 14,731,422UniSTSRnor5.0
RGSC_v3.4X25,105,272 - 25,105,445RGDRGSC3.4
RGSC_v3.4X25,105,273 - 25,105,445UniSTSRGSC3.4
CeleraX13,558,137 - 13,558,309UniSTS
RGSC_v3.1X25,158,742 - 25,158,914RGD
RH 3.4 MapX113.7UniSTS
RH 3.4 MapX113.7RGD
RH 2.0 Map2193.7RGD
SHRSP x BN MapX0.08RGD
FHH x ACI MapX0.08RGD
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer AAAATCTGCAGCACCTGACA
Reverse Primer TCGAGGACCACCTTACATGA
 
Template 
GNATCCCCCCATAAAGACACATTTNGGACACAAANACAAACCTACATAAATAAATTAAAATTTA
AGTTAACATTATATACCTCTAGCTATAATAAAGCTTTCTCATAAAATCTGCAGCACCTGACATC
TAATCCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAAAGTGAGACAGAGAGACAGAGATAGA
CAGTGAAGGACCAGCAGACAAACAGACAATAGAGGTTGAATCCAAGACATTGCTCATGTAAGGT
GGTCCTCGAGAGTATAAGAAAGCATAGGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGC
TGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATANGAGCCGGAAGCATAAA
GTGTAAAGCCTGGGGTGCCTAATGAGTGGGCCAACTCACATTAATTGCGNTGCGCTCACTGGCC
GGNTTCCANTNGGGNAACTNNTTGTGNCAGCNGNATTTTATGGATCTGGGCAACGCGCCGGGAG
AGGNGGG

Region

Nucleotide Sequences
GenBank Nucleotide AC133696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH619766.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information