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Gene: Kcnc2 (potassium voltage-gated channel subfamily C member 2) Rattus norvegicus

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Symbol:

Kcnc2

Name:

potassium voltage-gated channel subfamily C member 2

RGD ID:

628829

Description:

Enables delayed rectifier potassium channel activity; transmembrane transporter binding activity; and voltage-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential. Involved in several processes, including cellular response to nitric oxide; nervous system development; and protein complex oligomerization. Located in several cellular components, including axon; basolateral plasma membrane; and neuronal cell body membrane. Part of voltage-gated potassium channel complex. Is active in GABA-ergic synapse and presynaptic membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 103. Orthologous to human KCNC2 (potassium voltage-gated channel subfamily C member 2); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-Tetrachlorodibenzofuran; 3,4-methylenedioxymethamphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

KShIIIA; Kv3.2; potassium channel voltage-gated Shaw-related subfamily C member 2; potassium channel, voltage gated Shaw-related subfamily C, member 2; potassium voltage gated channel, Shaw-related subfamily, member 2; shaw-like potassium channel; voltage-gated potassium channel KCNC2; voltage-gated potassium channel subunit Kv3.2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	49,586,274 - 49,770,212 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	49,586,136 - 49,770,212 (+)	Ensembl				GRCr8
mRatBN7.2	7	47,700,035 - 47,883,979 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	47,700,288 - 47,883,968 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	49,609,550 - 49,792,283 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	51,812,632 - 51,995,385 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	51,590,463 - 51,773,199 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	54,978,453 - 55,159,362 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	54,980,120 - 55,159,351 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	54,998,077 - 55,177,456 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	51,326,602 - 51,487,958 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	44,495,328 - 44,675,986 (+)	NCBI		Celera
RGSC_v3.1	7	51,347,043 - 51,508,400 (+)	NCBI
Cytogenetic Map	7	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy (ISO)

developmental and epileptic encephalopathy 103 (ISO)

epilepsy (ISO)

genetic disease (ISO)

glioblastoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,1-dichloroethene (ISO)

1-naphthyl isothiocyanate (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

copper atom (EXP)

copper(0) (EXP)

ethanol (EXP,ISO)

fenamidone (ISO)

fenvalerate (EXP)

folic acid (ISO)

kainic acid (EXP)

ketamine (EXP)

lead(0) (ISO)

magnesium sulfate (EXP)

methapyrilene (ISO)

methoxychlor (EXP)

mono(2-ethylhexyl) phthalate (ISO)

ozone (EXP)

paracetamol (ISO)

pirinixic acid (EXP)

sodium arsenite (ISO)

tetrodotoxin (EXP)

titanium dioxide (ISO)

toluene (EXP)

venlafaxine hydrochloride (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

action potential (IBA,ISO)

cellular response to ammonium ion (IEP)

cellular response to nitric oxide (IDA)

cellular response to toxic substance (IEP,IMP)

forebrain development (IEA)

globus pallidus development (IEP)

membrane hyperpolarization (IEA,ISO,ISS)

monoatomic ion transmembrane transport (IDA,IEA)

monoatomic ion transport (IEA)

nitric oxide-cGMP-mediated signaling (IDA)

optic nerve development (IEA,IEP)

positive regulation of potassium ion transmembrane transport (IDA)

positive regulation of voltage-gated potassium channel activity (IDA)

potassium ion transmembrane transport (IBA,IDA,IEA)

potassium ion transport (IDA,IEA,ISO)

protein heterooligomerization (IDA)

protein homooligomerization (IDA,IEA)

regulation of action potential firing rate (IEA,ISO,ISS)

regulation of presynaptic membrane potential (IEA)

response to amine (IEP)

response to ethanol (IEP)

response to kainic acid (IEP)

response to light intensity (IEP)

response to magnesium ion (IEP)

response to nerve growth factor (IEP)

response to toxic substance (IEP)

transmembrane transport (IEA)

Cellular Component

apical plasma membrane (IDA,IEA)

axolemma (IDA)

axon (IDA,IEA,ISO)

axon terminus (IBA)

basolateral plasma membrane (IDA,IEA)

cell body (IEA,ISO)

dendrite (IDA,IEA,ISO)

dendrite membrane (IBA)

GABA-ergic synapse (IDA)

intracellular membrane-bounded organelle (IDA)

membrane (IDA,IEA,ISO)

monoatomic ion channel complex (IEA)

neuron projection (IEA)

neuronal cell body (IDA)

neuronal cell body membrane (IBA,IDA,IEA,ISO)

perikaryon (IDA,IEA,ISO,ISS)

plasma membrane (IDA,IEA,ISO)

postsynaptic membrane (IBA,IEA,ISO,ISS)

presynaptic membrane (IBA,IDA,IEA,ISO,ISS)

synapse (IDA,IEA)

terminal bouton (IDA)

vesicle (IDA)

voltage-gated potassium channel complex (IBA,IDA,IEA)

Molecular Function

delayed rectifier potassium channel activity (IBA,IDA)

metal ion binding (IEA)

monoatomic ion channel activity (IEA)

potassium channel activity (IEA)

protein binding (IPI,ISO)

transmembrane transporter binding (IEA,IPI,ISO)

voltage-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential (IDA,IMP,NAS)

voltage-gated potassium channel activity (IDA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Potassium channel subunit Kv3.2 and the water channel aquaporin-4 are selectively localized to cerebellar pinceau.	Bobik M, etal., Brain Res. 2004 Nov 12;1026(2):168-78.
2.	Global analysis of aberrant pre-mRNA splicing in glioblastoma using exon expression arrays.	Cheung HC, etal., BMC Genomics. 2008 May 12;9:216. doi: 10.1186/1471-2164-9-216.
3.	K(+) channel expression distinguishes subpopulations of parvalbumin- and somatostatin-containing neocortical interneurons.	Chow A, etal., J Neurosci. 1999 Nov 1;19(21):9332-45.
4.	Kv3.1b is a novel component of CNS nodes.	Devaux J, etal., J Neurosci. 2003 Jun 1;23(11):4509-18.
5.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6.	Neuronal activity and TrkB ligands influence Kv3.1b and Kv3.2 expression in developing cortical interneurons.	Grabert J and Wahle P, Neuroscience. 2008 Oct 15;156(3):618-29. doi: 10.1016/j.neuroscience.2008.08.008. Epub 2008 Aug 12.
7.	Visual experience regulates Kv3.1b and Kv3.2 expression in developing rat visual cortex.	Grabert J and Wahle P, Neuroscience. 2009 Jan 23;158(2):654-64. doi: 10.1016/j.neuroscience.2008.07.035. Epub 2008 Jul 25.
8.	Kv3.1-Kv3.2 channels underlie a high-voltage-activating component of the delayed rectifier K+ current in projecting neurons from the globus pallidus.	Hernandez-Pineda R, etal., J Neurophysiol. 1999 Sep;82(3):1512-28.
9.	Coexpression of high-voltage-activated ion channels Kv3.4 and Cav1.2 in pioneer axons during pathfinding in the developing rat forebrain.	Huang CY, etal., J Comp Neurol. 2012 Nov 1;520(16):3650-72. doi: 10.1002/cne.23119.
10.	KCNE1 and KCNE2 provide a checkpoint governing voltage-gated potassium channel a-subunit composition.	Kanda VA, etal., Biophys J. 2011 Sep 21;101(6):1364-75. doi: 10.1016/j.bpj.2011.08.014. Epub 2011 Sep 20.
11.	Impaired fast-spiking, suppressed cortical inhibition, and increased susceptibility to seizures in mice lacking Kv3.2 K+ channel proteins.	Lau D, etal., J Neurosci. 2000 Dec 15;20(24):9071-85.
12.	Shaw-like rat brain potassium channel cDNA's with divergent 3' ends.	Luneau C, etal., FEBS Lett 1991 Aug 19;288(1-2):163-7.
13.	Molecular cloning of a member of a third class of Shaker-family K+ channel genes in mammals.	McCormack T, etal., Proc Natl Acad Sci U S A 1990 Jul;87(13):5227-31.
14.	Molecular cloning of a member of a third class of Shaker-family K+ channel genes in mammals.	McCormack T, etal., Proc Natl Acad Sci U S A 1991 May 1;88(9):4060.
15.	Differential expression of Kv3.1b and Kv3.2 potassium channel subunits in interneurons of the basolateral amygdala.	McDonald AJ and Mascagni F, Neuroscience. 2006;138(2):537-47. Epub 2006 Jan 18.
16.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
17.	Thalamocortical projections have a K+ channel that is phosphorylated and modulated by cAMP-dependent protein kinase.	Moreno H, etal., J Neurosci. 1995 Aug;15(8):5486-501.
18.	Modulation of Kv3 potassium channels expressed in CHO cells by a nitric oxide-activated phosphatase.	Moreno H, etal., J Physiol. 2001 Feb 1;530(Pt 3):345-58.
19.	K+ channel subunit isoforms with divergent carboxy-terminal sequences carry distinct membrane targeting signals.	Ponce A, etal., J Membr Biol. 1997 Sep 15;159(2):149-59.
20.	Characterization of a Shaw-related potassium channel family in rat brain.	Rettig J, etal., EMBO J 1992 Jul;11(7):2473-86.
21.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
22.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
23.	Region-specific expression of a K+ channel gene in brain.	Rudy B, etal., Proc Natl Acad Sci U S A 1992 May 15;89(10):4603-7.
24.	Selective underexpression of Kv3.2 and Kv3.4 channels in the cortex of rats exposed to ethanol during early postnatal life.	Tavian D, etal., Neurol Sci. 2011 Aug;32(4):571-7. doi: 10.1007/s10072-010-0446-7. Epub 2011 Jan 14.
25.	Gating currents from a Kv3 subfamily potassium channel: charge movement and modification by BDS-II toxin.	Wang Z, etal., J Physiol. 2007 Nov 1;584(Pt 3):755-67. Epub 2007 Sep 13.
26.	Differential expression of Shaw-related K+ channels in the rat central nervous system.	Weiser M, etal., J Neurosci. 1994 Mar;14(3 Pt 1):949-72. doi: 10.1523/JNEUROSCI.14-03-00949.1994.
27.	Modulation of Kv3 subfamily potassium currents by the sea anemone toxin BDS: significance for CNS and biophysical studies.	Yeung SY, etal., J Neurosci. 2005 Sep 21;25(38):8735-45.

Additional References at PubMed

PMID:12000114	PMID:15240761	PMID:17761775	PMID:19332619	PMID:22871113

Genomics

Comparative Map Data

Kcnc2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	49,586,274 - 49,770,212 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	49,586,136 - 49,770,212 (+)	Ensembl				GRCr8
mRatBN7.2	7	47,700,035 - 47,883,979 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	47,700,288 - 47,883,968 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	49,609,550 - 49,792,283 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	51,812,632 - 51,995,385 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	51,590,463 - 51,773,199 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	54,978,453 - 55,159,362 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	54,980,120 - 55,159,351 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	54,998,077 - 55,177,456 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	51,326,602 - 51,487,958 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	44,495,328 - 44,675,986 (+)	NCBI		Celera
RGSC_v3.1	7	51,347,043 - 51,508,400 (+)	NCBI
Cytogenetic Map	7	q22	NCBI

KCNC2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	75,040,078 - 75,209,839 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	75,040,077 - 75,209,839 (-)	Ensembl			hg38	GRCh38
GRCh37	12	75,433,858 - 75,603,619 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	73,720,163 - 73,889,778 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	73,720,162 - 73,889,778	NCBI
Celera	12	75,101,336 - 75,270,876 (-)	NCBI		Celera
Cytogenetic Map	12	q21.1	NCBI
HuRef	12	72,483,472 - 72,653,079 (-)	NCBI		HuRef
CHM1_1	12	75,399,235 - 75,568,820 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	75,014,738 - 75,184,480 (-)	NCBI		T2T-CHM13v2.0

Kcnc2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	112,105,803 - 112,302,209 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	112,107,026 - 112,302,929 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	112,269,898 - 112,466,304 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	112,271,121 - 112,467,024 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	111,708,179 - 111,903,360 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	111,675,233 - 111,870,414 (+)	NCBI		MGSCv36	mm8
Celera	10	114,210,354 - 114,400,944 (+)	NCBI		Celera
Cytogenetic Map	10	D2	NCBI
cM Map	10	60.3	NCBI

Kcnc2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	14,422,396 - 14,600,341 (-)	Ensembl
ChiLan1.0	NW_004955405	14,420,447 - 14,599,780 (-)	NCBI	ChiLan1.0	ChiLan1.0

KCNC2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	83,082,905 - 83,251,756 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	83,079,301 - 83,248,152 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	72,566,924 - 72,736,270 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	75,419,465 - 75,588,535 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

KCNC2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	15,599,428 - 15,822,579 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	15,643,962 - 15,818,097 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	15,541,357 - 15,767,201 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	15,785,996 - 16,011,988 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	15,789,212 - 16,007,557 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	15,595,746 - 15,821,564 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	15,848,484 - 16,075,795 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	15,974,622 - 16,200,463 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Kcnc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	42,033,763 - 42,220,108 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936568	3,511,244 - 3,694,781 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936568	3,508,212 - 3,694,459 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KCNC2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	38,326,414 - 38,533,110 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	38,326,408 - 38,535,826 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	41,759,389 - 41,781,754 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KCNC2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	70,603,034 - 70,770,625 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	70,603,003 - 70,768,859 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	174,772,549 - 174,940,514 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kcnc2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	22,807,370 - 22,996,753 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624750	22,807,234 - 22,996,614 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Kcnc2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	190,413,118 - 190,579,293 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Kcnc2
771 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	649
Count of miRNA genes:	275
Interacting mature miRNAs:	337
Transcripts:	ENSRNOT00000005690, ENSRNOT00000005700, ENSRNOT00000005773, ENSRNOT00000049943
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354644	Spl4	Serum phospholipid level QTL 4	4.9		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	7	21541977	51639954	Rat
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	23807606	68807606	Rat
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	45113903	90113903	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	7216097	52216097	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	10517086	62346019	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	26638057	71638057	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	24179478	86817926	Rat
10059605	Kidm47	Kidney mass QTL 47	2.91	0.05	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	49137999	67614020	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	31770293	110435881	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	10112916	60150541	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	39845902	84845902	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	9460877	54460877	Rat
1354637	Scl30	Serum cholesterol level QTL 30	3.7		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	7	21541977	51639954	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	32998702	77998702	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
2317059	Aia15	Adjuvant induced arthritis QTL 15	2.46		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	49682832	63890004	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	36178764	81178764	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	48475049	93475049	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	36178764	81178764	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
2303629	Vencon3	Ventilatory control QTL 3	7.25		respiration trait (VT:0001943)	respiration rate (CMO:0000289)	7	42996226	58678836	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	28624575	65788017	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	49682832	115766396	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	21541977	86817926	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	49682832	115766396	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	10498820	55498820	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	17460447	62460447	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	49682832	115766396	Rat
2303582	Gluco53	Glucose level QTL 53	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	7	48603087	93603087	Rat
70207	Niddm31	Non-insulin dependent diabetes mellitus QTL 31	3.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	20057232	65057232	Rat
61439	Cia8	Collagen induced arthritis QTL 8	5.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	27182914	72182914	Rat

Markers in Region

D7Rat26

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	7	49,682,832 - 49,682,996 (+)	Marker Load Pipeline
Rnor_6.0	7	55,072,862 - 55,073,022	NCBI	Rnor6.0
Celera	7	44,590,656 - 44,590,819	UniSTS
RH 3.4 Map	7	412.9	UniSTS
RH 3.4 Map	7	412.9	RGD
RH 2.0 Map	7	380.4	RGD
SHRSP x BN Map	7	31.05	RGD
Cytogenetic Map	7	q12-q22	UniSTS

D7Rat169

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	7	49,605,702 - 49,605,909 (+)	Marker Load Pipeline
mRatBN7.2	7	47,719,466 - 47,719,673 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	54,998,209 - 54,998,415	NCBI	Rnor6.0
Rnor_5.0	7	55,017,742 - 55,017,948	UniSTS	Rnor5.0
RGSC_v3.4	7	51,344,692 - 51,344,898	UniSTS	RGSC3.4
RGSC_v3.4	7	51,344,691 - 51,344,898	RGD	RGSC3.4
Celera	7	44,513,417 - 44,513,623	UniSTS
RGSC_v3.1	7	51,365,111 - 51,365,507	RGD
FHH x ACI Map	7	26.78	RGD
FHH x ACI Map	7	26.78	UniSTS
Cytogenetic Map	7	q12-q22	UniSTS

D7Got205

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	7	55,072,801 - 55,073,014	NCBI	Rnor6.0
Celera	7	44,590,664 - 44,590,881	UniSTS
Cytogenetic Map	7	q12-q22	UniSTS

BF404636

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	47,881,223 - 47,881,330 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	55,156,607 - 55,156,713	NCBI	Rnor6.0
Rnor_5.0	7	55,174,701 - 55,174,807	UniSTS	Rnor5.0
RGSC_v3.4	7	51,485,214 - 51,485,320	UniSTS	RGSC3.4
Celera	7	44,673,242 - 44,673,348	UniSTS
RH 3.4 Map	7	417.8	UniSTS
Cytogenetic Map	7	q12-q22	UniSTS

AU046555

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	47,721,167 - 47,721,291 (+)	MAPPER	mRatBN7.2
mRatBN7.2	7	47,721,167 - 47,721,315 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	54,999,910 - 55,000,057	NCBI	Rnor6.0
Rnor_6.0	7	54,999,910 - 55,000,033	NCBI	Rnor6.0
Rnor_5.0	7	55,019,621 - 55,019,768	UniSTS	Rnor5.0
Rnor_5.0	7	55,019,621 - 55,019,744	UniSTS	Rnor5.0
RGSC_v3.4	7	51,346,393 - 51,346,516	UniSTS	RGSC3.4
RGSC_v3.4	7	51,346,393 - 51,346,540	UniSTS	RGSC3.4
Celera	7	44,515,109 - 44,515,256	UniSTS
Celera	7	44,515,109 - 44,515,232	UniSTS
Cytogenetic Map	7	q12-q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	8	36	141	46	39	16	31	16	6	158	91	7	118	35	86	23	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001439883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_139216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_139217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005486545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC109965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC127978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AX839889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M34052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M59211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M59313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M84202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M84203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005690 ⟹ ENSRNOP00000005690

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	49,586,350 - 49,770,200 (+)	Ensembl
mRatBN7.2 Ensembl	7	47,701,378 - 47,883,968 (+)	Ensembl
Rnor_6.0 Ensembl	7	54,980,120 - 55,159,351 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000005773 ⟹ ENSRNOP00000005773

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	49,586,352 - 49,762,647 (+)	Ensembl
mRatBN7.2 Ensembl	7	47,701,421 - 47,881,436 (+)	Ensembl
Rnor_6.0 Ensembl	7	54,980,163 - 55,156,819 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099049 ⟹ ENSRNOP00000084708

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	49,586,136 - 49,770,212 (+)	Ensembl
mRatBN7.2 Ensembl	7	47,700,288 - 47,880,696 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105247 ⟹ ENSRNOP00000088724

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	47,700,288 - 47,883,968 (+)	Ensembl

RefSeq Acc Id:

NM_139216 ⟹ NP_631962

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	49,587,614 - 49,770,202 (+)	NCBI
mRatBN7.2	7	47,701,378 - 47,883,968 (+)	NCBI
Rnor_6.0	7	54,980,120 - 55,159,351 (+)	NCBI
Rnor_5.0	7	54,998,077 - 55,177,456 (+)	NCBI
RGSC_v3.4	7	51,326,602 - 51,487,958 (+)	RGD
Celera	7	44,495,328 - 44,675,986 (+)	RGD

Sequence:

show sequence

GCCACGGTGAACATCTGGCCCACGAGAGCTTTAACTTGGTGCTGTGTTCGCCTTCCCTAGTCAT
GTCTGAGCCACAGAGATGGGCAAGATCGAGAACAACGAGAGGGTGATCCTCAATGTCGGAGGCA
CCAGGCACGAAACCTACCGCAGCACTCTCAAGACCCTTCCTGGAACTCGCCTGGCCCTTCTCGC
CTCCTCTGAACCTCAGGGCGACTGCCTGACTGCTGCGGGTGACAAGCTGCAGCCGCTGCCCCCT
CCGCTGTCTCCACCGCCGCGACCGCCTCCCTTGTCCCCTGTCCCCAGCGGCTGCTTCGAGGGCG
GCGCAGGCAACTGCAGTTCGCACGGTGGCAATGGCAGCGACCACCCTGGGGGAGGCCGCGAATT
CTTCTTCGATCGCCACCCAGGAGTCTTCGCCTATGTGCTCAACTACTACCGCACGGGCAAGCTG
CACTGCCCCGCCGACGTGTGTGGACCGCTCTTCGAGGAAGAGCTGGCATTCTGGGGCATCGATG
AGACCGACGTGGAGCCCTGCTGCTGGATGACCTACAGGCAGCACCGGGACGCGGAGGAGGCCCT
GGATATCTTCGAGACACCCGACCTCATCGGAGGCGACCCTGGTGATGATGAGGACCTAGGGGGC
AAGAGACTGGGCATTGAGGATGCTGCGGGGCTGGGAGGACCCGATGGCAAGTCTGGCCGCTGGA
GGAAGCTGCAGCCTCGCATGTGGGCTCTCTTTGAGGACCCCTATTCATCCAGAGCCGCTAGGTT
TATTGCTTTTGCTTCTCTGTTCTTCATTTTGGTTTCCATCACAACCTTTTGCCTGGAGACACAC
GAAGCTTTCAATATTGTTAAAAACAAGACAGAGCCAGTCATCAACGGCACCAGCGCTGTTCTCC
AGTATGAAATCGAAACGGATCCTGCCTTGACATATGTGGAAGGAGTGTGTGTGGTGTGGTTTAC
TTTTGAATTTTTAGTCCGTATTGTTTTCTCGCCCAATAAACTTGAGTTCATCAAAAATCTATTG
AACATCATTGACTTTGTGGCCATCCTCCCCTTCTACTTAGAGGTGGGACTCAGCGGGCTGTCTT
CCAAAGCGGCTAAAGATGTGCTCGGCTTTCTCAGGGTGGTTAGGTTTGTGAGGATCCTGAGAAT
CTTCAAGCTTACCCGCCATTTCGTAGGTCTGAGAGTGCTCGGACACACTCTTCGTGCGAGCACC
AATGAATTTTTGTTGCTGATCATCTTTCTGGCTCTGGGAGTTTTGATATTCGCTACGATGATCT
ACTACGCTGAGCGAGTAGGGGCTCAACCTAATGATCCCTCAGCGAGTGAGCACACACAGTTCAA
AAACATCCCCATTGGTTTCTGGTGGGCTGTGGTGACCATGACTACCTTAGGCTATGGGGATATG
TACCCCCAAACATGGTCAGGGATGTTGGTGGGGGCCTTGTGTGCTCTGGCTGGAGTGCTGACCA
TAGCTATGCCTGTGCCCGTCATTGTCAACAATTTTGGGATGTACTACTCCTTGGCAATGGCGAA
GCAGAAACTTCCAAGAAAAAGAAAGAAGCACATTCCTCCTGCCCCTCTGGCAAGCTCACCTACA
TTTTGCAAGACAGAATTAAACATGGCTTGTAACAGTACCCAGAGTGACACATGTCTGGGCAAAG
AAAACCGGCTTCTGGAACATAACAGATCAGTGTTATCAGGTGACGACAGTACAGGAAGTGAGCC
GCCATTATCACCTCCGGAAAGGCTCCCCATCAGACGCTCTAGTACCAGAGACAAAAACAGAAGA
GGGGAAACATGTTTCCTGTTGACGACAGGTGATTACACGTGCGCTTCTGATGGAGGAATCAGGA
AAGATAACTGCAAAGATGTTGTCATTACTGGTTACACGCAAGCCGAGGCCAGATCTCTTACTTA
ATGACTTGGGAAAGGCACAAAACATGAAAGAAAGTGTTGTACAGAATTTATCATGGATTTTTGC
CTGCTGAAAATGGGACATTGAGATTTAGCCATTCCAAGGATTGTACTGGAAACTTCTGCTACTG
AATGTGACCGGATGTGACCGGTTTGTGTTCAGAAGAGTTCCCGCATTCTCTGAGGCATTTAAAG
CTTGTAAAGAAATGGTGGCTGGAACTGAAATGGGCTTTGCCAAGGAAATATTCTGCTTGTCGAC
AGACCAGAGTCCACAAAACAACTGTAAATACCAACGTGTGCATGGGTCCACCCTTCTCACAGTC
TCATAGCACAGGGAGCCACATTCATTGTCAGCATCTGTGAAGCTTCAAGAAATGCCCACAAGGC
TCTGAATGGCTCCTCTCGGGCTCATGGTGGTTTTGCTGCAAATTACAGAGGGCAGTGAATCCAA
TGTAGTATAGGTCTGTTTTCATTTCTTTTATTTGTACATTACGTGTTGTATCTACAAACACCGA
TTGCCTCATTTTCTTGCAAACCACTTATATATCCGCTTGTGAACTATGTTGTAAACTTTTAGTG
TCTACATAGAAATCTAACCATTTCTTAGTCATGTATTCATTTAGTTCTGGAACGCTGTTACTAT
CTAGAAGACAGTCATCACCAGTATTCATCGTATAAGTCTTTTGTCATTGTTACCTCAATTATAA
ATATTAAAAATATAAATTCTGGCAATGAGAATATTTTTTTATTAAATGATCAAGGAAAATGTCA
GTATATAGTAGAATATTATCAAATTATATCCTAAAATGTCTATTTTGCATAAAAGAGATATTCT
TCAATCGATTCCTTTTTTTCGTGAGCTTTGTGGCTAATGAAGCGTGTGTTTGTCTTCATCACTG
CTGTAGTTGAAACTGTGTAAGAGTTTTTCATCTTGCTTAATCAATATTTCCAGAATCTCTTAGT
TCCCCTGGGATTCTGAATATACTCTATAGCCTAATTATAAACCCCTGTATCGTGTACCTTTTGT
GACCATCTCAAGGTGCATGCCTAATCGTTGTGATAAGCCAATGGACATGTTACTAACTGAAATG
AAGAATAAAAGTCAAACGATCTGGGGATAAACTTGAATCCTATCTGATTAAATGAT

hide sequence

RefSeq Acc Id:

NM_139217 ⟹ NP_631963

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	49,587,657 - 49,767,670 (+)	NCBI
mRatBN7.2	7	47,701,421 - 47,881,436 (+)	NCBI
Rnor_6.0	7	54,980,163 - 55,156,819 (+)	NCBI
Rnor_5.0	7	54,998,077 - 55,177,456 (+)	NCBI
RGSC_v3.4	7	51,326,602 - 51,487,958 (+)	RGD
Celera	7	44,495,371 - 44,673,454 (+)	NCBI

Sequence:

show sequence

GTGTTCGCCTTCCCTAGTCATGTCTGAGCCACAGAGATGGGCAAGATCGAGAACAACGAGAGGG
TGATCCTCAATGTCGGAGGCACCAGGCACGAAACCTACCGCAGCACTCTCAAGACCCTTCCTGG
AACTCGCCTGGCCCTTCTCGCCTCCTCTGAACCTCAGGGCGACTGCCTGACTGCTGCGGGTGAC
AAGCTGCAGCCGCTGCCCCCTCCGCTGTCTCCACCGCCGCGACCGCCTCCCTTGTCCCCTGTCC
CCAGCGGCTGCTTCGAGGGCGGCGCAGGCAACTGCAGTTCGCACGGTGGCAATGGCAGCGACCA
CCCTGGGGGAGGCCGCGAATTCTTCTTCGATCGCCACCCAGGAGTCTTCGCCTATGTGCTCAAC
TACTACCGCACGGGCAAGCTGCACTGCCCCGCCGACGTGTGTGGACCGCTCTTCGAGGAAGAGC
TGGCATTCTGGGGCATCGATGAGACCGACGTGGAGCCCTGCTGCTGGATGACCTACAGGCAGCA
CCGGGACGCGGAGGAGGCCCTGGATATCTTCGAGACACCCGACCTCATCGGAGGCGACCCTGGT
GATGATGAGGACCTAGGGGGCAAGAGACTGGGCATTGAGGATGCTGCGGGGCTGGGAGGACCCG
ATGGCAAGTCTGGCCGCTGGAGGAAGCTGCAGCCTCGCATGTGGGCTCTCTTTGAGGACCCCTA
TTCATCCAGAGCCGCTAGGTTTATTGCTTTTGCTTCTCTGTTCTTCATTTTGGTTTCCATCACA
ACCTTTTGCCTGGAGACACACGAAGCTTTCAATATTGTTAAAAACAAGACAGAGCCAGTCATCA
ACGGCACCAGCGCTGTTCTCCAGTATGAAATCGAAACGGATCCTGCCTTGACATATGTGGAAGG
AGTGTGTGTGGTGTGGTTTACTTTTGAATTTTTAGTCCGTATTGTTTTCTCGCCCAATAAACTT
GAGTTCATCAAAAATCTATTGAACATCATTGACTTTGTGGCCATCCTCCCCTTCTACTTAGAGG
TGGGACTCAGCGGGCTGTCTTCCAAAGCGGCTAAAGATGTGCTCGGCTTTCTCAGGGTGGTTAG
GTTTGTGAGGATCCTGAGAATCTTCAAGCTTACCCGCCATTTCGTAGGTCTGAGAGTGCTCGGA
CACACTCTTCGTGCGAGCACCAATGAATTTTTGTTGCTGATCATCTTTCTGGCTCTGGGAGTTT
TGATATTCGCTACGATGATCTACTACGCTGAGCGAGTAGGGGCTCAACCTAATGATCCCTCAGC
GAGTGAGCACACACAGTTCAAAAACATCCCCATTGGTTTCTGGTGGGCTGTGGTGACCATGACT
ACCTTAGGCTATGGGGATATGTACCCCCAAACATGGTCAGGGATGTTGGTGGGGGCCTTGTGTG
CTCTGGCTGGAGTGCTGACCATAGCTATGCCTGTGCCCGTCATTGTCAACAATTTTGGGATGTA
CTACTCCTTGGCAATGGCGAAGCAGAAACTTCCAAGAAAAAGAAAGAAGCACATTCCTCCTGCC
CCTCTGGCAAGCTCACCTACATTTTGCAAGACAGAATTAAACATGGCTTGTAACAGTACCCAGA
GTGACACATGTCTGGGCAAAGAAAACCGGCTTCTGGAACATAACAGATCAGTGTTATCAGGTGA
CGACAGTACAGGAAGTGAGCCGCCATTATCACCTCCGGAAAGGCTCCCCATCAGACGCTCTAGT
ACCAGAGACAAAAACAGAAGAGGGGAAACATGTTTCCTGTTGACGACAGGTGATTACACGTGCG
CTTCTGATGGAGGAATCAGGAAAGGATATGAAAAATCCCGAAGCTTAAACAACATAGCGGGCTT
GGCAGGCAATGCTCTGAGACTCTCTCCAGTAACATCCCCCTACAACTCTCCGTGTCCTCTGAGG
CGCTCTCGGTCTCCCATCCCATCTATCTTGTAAACCAAACTGCACCAATCGGCTAAATTCTATC
ACTACAACTCCTGTCCACCCTGTACTGGAAACAATTAACTATAGAGTTTCTCCAGGCTCCATTA
AGAACAGTGTAGATCCTGCATGACATTACTATTCGAAGTCAGAAATGCTACTCGAGTAGCTAGA
ACATCTTTTCCTGGCTTTAAAGATGGCCTAAAGTAGTGCTGCTACTCAGTAAGAGTTGCCCAAT
TTCCTTTCGCTATACGGTGACCAATAGCGTCAGATATTGGCCAGTGCACGAATGCATAAGCAAA
TCTTCAGGGAGATATTCTTTAATAGTGTGCTTCTAAATGCCAACCACTTCACTGGACCTTCCTT
TCTTGTGACTGACTCCAACCCATTCTGAAGATGTCTGGGATCCTATCTAGATCGTATAAACCAT
GACTTTGGTCAGCTCGTTTGCATGGACCATCTTGCCTGTATCACCTGAATACAGTGTGTAGCGT
CCTGGTACC

hide sequence

RefSeq Acc Id:

XM_006241327 ⟹ XP_006241389

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	49,586,274 - 49,770,212 (+)	NCBI
mRatBN7.2	7	47,700,035 - 47,883,979 (+)	NCBI
Rnor_6.0	7	54,978,783 - 55,159,362 (+)	NCBI
Rnor_5.0	7	54,998,077 - 55,177,456 (+)	NCBI

Sequence:

show sequence

GGTGACTCTGGGCGCGGAGGGTGGCTATGGGAGAGCCCGCAGATCGCAGCAGCGTGAAGGCGGG
GAGCGCGGCGGGCGGCGGGCGGGGGCTGTTTCCCCGACCTCAGCACCCAGAGAAGCGGCTCAAC
CACCTGAACCCCGAAAACGCCAACAAGTAGTTTCTCCTTTGAGGAGGGCGGCTCAGCTGGCCAC
AGTGACTCCGTCCGACTGCAGGAAGAACCTCGTCCACACGGAGACCCAAGCAGATCCACTTTTC
TCCCGGTCTCCTTAAGTCATGTCTGAGCCACAGAGATGGGCAAGATCGAGAACAACGAGAGGGT
GATCCTCAATGTCGGAGGCACCAGGCACGAAACCTACCGCAGCACTCTCAAGACCCTTCCTGGA
ACTCGCCTGGCCCTTCTCGCCTCCTCTGAACCTCAGGGCGACTGCCTGACTGCTGCGGGTGACA
AGCTGCAGCCGCTGCCCCCTCCGCTGTCTCCACCGCCGCGACCGCCTCCCTTGTCCCCTGTCCC
CAGCGGCTGCTTCGAGGGCGGCGCAGGCAACTGCAGTTCGCACGGTGGCAATGGCAGCGACCAC
CCTGGGGGAGGCCGCGAATTCTTCTTCGATCGCCACCCAGGAGTCTTCGCCTATGTGCTCAACT
ACTACCGCACGGGCAAGCTGCACTGCCCCGCCGACGTGTGTGGACCGCTCTTCGAGGAAGAGCT
GGCATTCTGGGGCATCGATGAGACCGACGTGGAGCCCTGCTGCTGGATGACCTACAGGCAGCAC
CGGGACGCGGAGGAGGCCCTGGATATCTTCGAGACACCCGACCTCATCGGAGGCGACCCTGGTG
ATGATGAGGACCTAGGGGGCAAGAGACTGGGCATTGAGGATGCTGCGGGGCTGGGAGGACCCGA
TGGCAAGTCTGGCCGCTGGAGGAAGCTGCAGCCTCGCATGTGGGCTCTCTTTGAGGACCCCTAT
TCATCCAGAGCCGCTAGGTTTATTGCTTTTGCTTCTCTGTTCTTCATTTTGGTTTCCATCACAA
CCTTTTGCCTGGAGACACACGAAGCTTTCAATATTGTTAAAAACAAGACAGAGCCAGTCATCAA
CGGCACCAGCGCTGTTCTCCAGTATGAAATCGAAACGGATCCTGCCTTGACATATGTGGAAGGA
GTGTGTGTGGTGTGGTTTACTTTTGAATTTTTAGTCCGTATTGTTTTCTCGCCCAATAAACTTG
AGTTCATCAAAAATCTATTGAACATCATTGACTTTGTGGCCATCCTCCCCTTCTACTTAGAGGT
GGGACTCAGCGGGCTGTCTTCCAAAGCGGCTAAAGATGTGCTCGGCTTTCTCAGGGTGGTTAGG
TTTGTGAGGATCCTGAGAATCTTCAAGCTTACCCGCCATTTCGTAGGTCTGAGAGTGCTCGGAC
ACACTCTTCGTGCGAGCACCAATGAATTTTTGTTGCTGATCATCTTTCTGGCTCTGGGAGTTTT
GATATTCGCTACGATGATCTACTACGCTGAGCGAGTAGGGGCTCAACCTAATGATCCCTCAGCG
AGTGAGCACACACAGTTCAAAAACATCCCCATTGGTTTCTGGTGGGCTGTGGTGACCATGACTA
CCTTAGGCTATGGGGATATGTACCCCCAAACATGGTCAGGGATGTTGGTGGGGGCCTTGTGTGC
TCTGGCTGGAGTGCTGACCATAGCTATGCCTGTGCCCGTCATTGTCAACAATTTTGGGATGTAC
TACTCCTTGGCAATGGCGAAGCAGAAACTTCCAAGAAAAAGAAAGAAGCACATTCCTCCTGCCC
CTCTGGCAAGCTCACCTACATTTTGCAAGACAGAATTAAACATGGCTTGTAACAGTACCCAGAG
TGACACATGTCTGGGCAAAGAAAACCGGCTTCTGGAACATAACAGATCAGTGTTATCAGGTGAC
GACAGTACAGGAAGTGAGCCGCCATTATCACCTCCGGAAAGGCTCCCCATCAGACGCTCTAGTA
CCAGAGACAAAAACAGAAGAGGGGAAACATGTTTCCTGTTGACGACAGGTGATTACACGTGCGC
TTCTGATGGAGGAATCAGGAAAGGATATGAAAAATCCCGAAGCTTAAACAACATAGCGGGCTTG
GCAGGCAATGCTCTGAGACTCTCTCCAGTAACATCCCCCTACAACTCTCCGTGTCCTCTGAGGC
GCTCTCGGTCTCCCATCCCATCTATCTTGTAAACCAAACTGCACCAATCGGCTAAATTCTATCA
CTACAACTCCTGTCCACCCTGTACTGGAAACAATTAACTATAGAGTTTCTCCAGGCTCCATTAA
GAACAGTGTAGATCCTGCATGACATTACTATTCGAAGTCAGAAATGCTACTCGAGTAGCTAGAA
CATCTTTTCCTGGCTTTAAAGATGGCCTAAAGTAGTGCTGCTACTCAGTAAGAGTTGCCCAATT
TCCTTTCGCTATACGGTGACCAATAGCGTCAGATATTGGCCAGTGCACGAATGCATAAGCAAAT
CTTCAGGGAGATATTCTTTAATAGTGTGCTTCTAAATGCCAACCACTTCACTGGACCTTCCTTT
CTTGTGACTGACTCCAACCCATTCTGAAGATGTCTGGGATCCTATCTAGATCGTATAAACCATG
ACTTTGGTCAGCTCGTTTGCATGGACCATCTTGCCTGTATCACCTGAATACAGTGTGTAGCGTC
CTGGTACCGGATGGCTCGGGGACACATATACTCACTTCAAACCATCCTGCAAATGTGAACGCGC
TGGGAGCCTGTTCTGCATGTGGAATTGTGGGGCAGGGAGGGGTGCCCTTCTCCTTGCTATCCCC
CACCCATTCTTTGATAGAAGTATTTACTTTAAATACCTTAATTTCTCGATTGATTTATTTTTCT
TAAAAAACAAAAACAAAAACAAAAACAAATGTTGTATTGGTGTTCTGAATGTTTTTGGTTGTTT
GTATACACAGATAACTGCAAAGATGTTGTCATTACTGGTTACACGCAAGCCGAGGCCAGATCTC
TTACTTAATGACTTGGGAAAGGCACAAAACATGAAAGAAAGGTAACGGCTAACCAGGCTTGCAT
TGCTTAGCCAAGAATTGCTGCTTGGTACTAGAGCCATTTCCCCCCTTATAAGTCCTAGAATTTG
TCATTACTTTTAGACGTAAAGTGCCAAATATTACCCAAAGCTTTTGTCTATTTTTTTTGCCTCT
TTGTTTTTTATTTATTATTTTGTGTGAACATTAAAAGTTATTGGTGTTCACTGGAGGCTTTTTT
GACTAGCCTTAAAATTTGCCTCAAAGGACTAACCAGATTCTTCAGGCTGTGTTGAATCAGGTGC
TTCGTCCCGTGTGTTGTCACCATCTGTCTGTCTTAGTTCCCTGTCTTAATTGTATAAGCTATCT
GTCTCCATAGAGGGTAGATGTGCCCTGATCGTCTCTTTAAACTTAGTACCGATCTCCCTACCTC
CTGCCCATGTCTTCTTTGCTACTTGGAGCAGCCTCTCTGCTTTGTGTATAAAACTAATGATGCT
CTGTAGACTACCTAAATTAATAGGCACTGTGAATTTTTTTTTTCATGAGCAGGACCGAAGCAGC
GATTTCACCATAGTTCTCTGTTGCCTAATGCATTGCTGGTTTCTATTCTAGGAATCAGCATTCT
TTCAGGAAACATCTCTAGGGAATCCGTTTTTTTTTTTTTAATCTGAAGGGAAGATAGTCTGTTT
ACACATCCCTACCAAATGCCATAGCAATAGTATATCTGATATTTTGGATATGAGAGGGAAGGAA
AATGCCATAATACAGTTGCAGAATAGACTATTACTTTCAAGTAGAATAGACTGATGCTTAAGAG
TGTTGACGAATTCCTAATTCCCATGTTTATTTTTGATAGAAAGGCAGTTGCTACTTTTGTTATT
GGAAAAAGACATGTGTTAATCTCCATTCCCAAGCCCTAGAGCATGAGCTGCATGTCAGAAATTT
GTACAGCAATGCATTTACCCAGACGTAAATATTTGAAATTTAGAGATACCGTGAATCTTTTGAT
AACACCATTTATAGAATGCTGTAAATACCCAGAGATTTACGGTAAGGAATTAATATGCTGTCTG
GTGCTGCTGTTATTGACTGCAGTGTTGTACAGAATTTATCATGGATTTTTGCCTGCTGAAAATG
GGACATTGAGATTTAGCCATTCCAAGGATTGTACTGGAAACTTCTGCTACTGAATGTGACCGGA
TGTGACCGGTTTGTGTTCAGAAGAGTTCCCGCATTCTCTGAGGCATTTAAAGCTTGTAAAGAAA
TGGTGGCTGGAACTGAAATGGTGTTTGCCAAGGAAATATTCTGCTTGTCGACAGACCAGAGTCC
ACAAAACAACTGTAAATACCAACGTGTGCATGGGTCCACCCTTCTCACAGTCTCATAGCACAGG
GAGCCACATTCATTGTCAGCATCTGTGAAGCTTCAAGAAATGCCCACAAGGCTCTGAATGGCTC
CTCTCGGGCTCATGGTGGTTTTGCTGCAAATTACAGAGGGCAGTGAATCCAATGTAGTATAGGT
CTGTTTTCATTTCTTTTATTTGTACATTACGTGTTGTATCTACAAACACCGATTGCCTCATTTT
CTTGCAAACCACTTATATATCCGCTTGTGAACTATGTTGTAAACTTTTAGTGTCTACATAGAAA
TCTAACCATTTCTTAGTCATGTATTCATTTAGTTCTGGAACGCTGTTACTATCTAGAAGACAGT
CATCACCAGTATTCATAGTTTAAGTCTTTTGTCATTGTTACCTCAATTATAAATATTAAAAATA
TAAATTCTGGCAATGAGAATATTTTTTTATTAAATGATCAAGGAAAATGTCAGTATATAGTAGA
ATATTATCAAATTATATCCTAAAATGTCTATTTTGCATAAAAGAGATATTCTTCAATCGATTCC
TTTTTTTCGTGAGCTTTGTGGCTAATGAAGCGTGTGTTTGTCTTCATCACTGCTGTAGTTGAAA
CTGTGTAAGAGTTTTTCATCTTGCTTAATCAATATTTCCAGAATCTATTAGTTCCCCTGGGATT
CTGAATATACTCTATAGCCTAATTATAAACCCCTGTATCGTGTACCTTTTGTGACCATCTCAAG
GTGCATGCCTAATCGTTGTGATAAGCCAATGGACATGTTACTAACTGAAATGAAGAATAAAAGT
CAAACGATCTGGGGATAAACTTGAATCCTATCTGATTAAATGATTCCTACCCTTC

hide sequence

RefSeq Acc Id:

XM_017594660 ⟹ XP_017450149

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	49,586,771 - 49,770,212 (+)	NCBI
mRatBN7.2	7	47,700,511 - 47,883,979 (+)	NCBI
Rnor_6.0	7	54,979,277 - 55,159,362 (+)	NCBI

Sequence:

show sequence

AAGGGGGAGGGGTGGCTTAGATTGCTCACTTTTGTCCTCAAAGATGGATCCTAGTTAGTCGTTT
CCTTTCCCAAGTAATAATAACATTAGCAACAACGGCAACAGTAATGTGAAGAGGAAATTGGATG
AGGAAATTAGTCAGAGGTCTCCTTGGTGAAAGGCGGTAGCGGGGACATTTGTTGTTGTTGTTGT
TGTTGTTCTGACTTCTGTATTCAGTCTTCAGCCAGTCATGTCTGAGCCACAGAGATGGGCAAGA
TCGAGAACAACGAGAGGGTGATCCTCAATGTCGGAGGCACCAGGCACGAAACCTACCGCAGCAC
TCTCAAGACCCTTCCTGGAACTCGCCTGGCCCTTCTCGCCTCCTCTGAACCTCAGGGCGACTGC
CTGACTGCTGCGGGTGACAAGCTGCAGCCGCTGCCCCCTCCGCTGTCTCCACCGCCGCGACCGC
CTCCCTTGTCCCCTGTCCCCAGCGGCTGCTTCGAGGGCGGCGCAGGCAACTGCAGTTCGCACGG
TGGCAATGGCAGCGACCACCCTGGGGGAGGCCGCGAATTCTTCTTCGATCGCCACCCAGGAGTC
TTCGCCTATGTGCTCAACTACTACCGCACGGGCAAGCTGCACTGCCCCGCCGACGTGTGTGGAC
CGCTCTTCGAGGAAGAGCTGGCATTCTGGGGCATCGATGAGACCGACGTGGAGCCCTGCTGCTG
GATGACCTACAGGCAGCACCGGGACGCGGAGGAGGCCCTGGATATCTTCGAGACACCCGACCTC
ATCGGAGGCGACCCTGGTGATGATGAGGACCTAGGGGGCAAGAGACTGGGCATTGAGGATGCTG
CGGGGCTGGGAGGACCCGATGGCAAGTCTGGCCGCTGGAGGAAGCTGCAGCCTCGCATGTGGGC
TCTCTTTGAGGACCCCTATTCATCCAGAGCCGCTAGGTTTATTGCTTTTGCTTCTCTGTTCTTC
ATTTTGGTTTCCATCACAACCTTTTGCCTGGAGACACACGAAGCTTTCAATATTGTTAAAAACA
AGACAGAGCCAGTCATCAACGGCACCAGCGCTGTTCTCCAGTATGAAATCGAAACGGATCCTGC
CTTGACATATGTGGAAGGAGTGTGTGTGGTGTGGTTTACTTTTGAATTTTTAGTCCGTATTGTT
TTCTCGCCCAATAAACTTGAGTTCATCAAAAATCTATTGAACATCATTGACTTTGTGGCCATCC
TCCCCTTCTACTTAGAGGTGGGACTCAGCGGGCTGTCTTCCAAAGCGGCTAAAGATGTGCTCGG
CTTTCTCAGGGTGGTTAGGTTTGTGAGGATCCTGAGAATCTTCAAGCTTACCCGCCATTTCGTA
GGTCTGAGAGTGCTCGGACACACTCTTCGTGCGAGCACCAATGAATTTTTGTTGCTGATCATCT
TTCTGGCTCTGGGAGTTTTGATATTCGCTACGATGATCTACTACGCTGAGCGAGTAGGGGCTCA
ACCTAATGATCCCTCAGCGAGTGAGCACACACAGTTCAAAAACATCCCCATTGGTTTCTGGTGG
GCTGTGGTGACCATGACTACCTTAGGCTATGGGGATATGTACCCCCAAACATGGTCAGGGATGT
TGGTGGGGGCCTTGTGTGCTCTGGCTGGAGTGCTGACCATAGCTATGCCTGTGCCCGTCATTGT
CAACAATTTTGGGATGTACTACTCCTTGGCAATGGCGAAGCAGAAACTTCCAAGAAAAAGAAAG
AAGCACATTCCTCCTGCCCCTCTGGCAAGCTCACCTACATTTTGCAAGACAGAATTAAACATGG
CTTGTAACAGTACCCAGAGTGACACATGTCTGGGCAAAGAAAACCGGCTTCTGGAACATAACAG
ATCAGTGTTATCAGGTGACGACAGTACAGGAAGTGAGCCGCCATTATCACCTCCGGAAAGGCTC
CCCATCAGACGCTCTAGTACCAGAGACAAAAACAGAAGAGGGGAAACATGTTTCCTGTTGACGA
CAGGTGATTACACGTGCGCTTCTGATGGAGGAATCAGGAAAGGATATGAAAAATCCCGAAGCTT
AAACAACATAGCGGGCTTGGCAGGCAATGCTCTGAGACTCTCTCCAGTAACATCCCCCTACAAC
TCTCCGTGTCCTCTGAGGCGCTCTCGGTCTCCCATCCCATCTATCTTGTAAACCAAACTGCACC
AATCGGCTAAATTCTATCACTACAACTCCTGTCCACCCTGTACTGGAAACAATTAACTATAGAG
TTTCTCCAGGCTCCATTAAGAACAGTGTAGATCCTGCATGACATTACTATTCGAAGTCAGAAAT
GCTACTCGAGTAGCTAGAACATCTTTTCCTGGCTTTAAAGATGGCCTAAAGTAGTGCTGCTACT
CAGTAAGAGTTGCCCAATTTCCTTTCGCTATACGGTGACCAATAGCGTCAGATATTGGCCAGTG
CACGAATGCATAAGCAAATCTTCAGGGAGATATTCTTTAATAGTGTGCTTCTAAATGCCAACCA
CTTCACTGGACCTTCCTTTCTTGTGACTGACTCCAACCCATTCTGAAGATGTCTGGGATCCTAT
CTAGATCGTATAAACCATGACTTTGGTCAGCTCGTTTGCATGGACCATCTTGCCTGTATCACCT
GAATACAGTGTGTAGCGTCCTGGTACCGGATGGCTCGGGGACACATATACTCACTTCAAACCAT
CCTGCAAATGTGAACGCGCTGGGAGCCTGTTCTGCATGTGGAATTGTGGGGCAGGGAGGGGTGC
CCTTCTCCTTGCTATCCCCCACCCATTCTTTGATAGAAGTATTTACTTTAAATACCTTAATTTC
TCGATTGATTTATTTTTCTTAAAAAACAAAAACAAAAACAAAAACAAATGTTGTATTGGTGTTC
TGAATGTTTTTGGTTGTTTGTATACACAGATAACTGCAAAGATGTTGTCATTACTGGTTACACG
CAAGCCGAGGCCAGATCTCTTACTTAATGACTTGGGAAAGGCACAAAACATGAAAGAAAGGTAA
CGGCTAACCAGGCTTGCATTGCTTAGCCAAGAATTGCTGCTTGGTACTAGAGCCATTTCCCCCC
TTATAAGTCCTAGAATTTGTCATTACTTTTAGACGTAAAGTGCCAAATATTACCCAAAGCTTTT
GTCTATTTTTTTTGCCTCTTTGTTTTTTATTTATTATTTTGTGTGAACATTAAAAGTTATTGGT
GTTCACTGGAGGCTTTTTTGACTAGCCTTAAAATTTGCCTCAAAGGACTAACCAGATTCTTCAG
GCTGTGTTGAATCAGGTGCTTCGTCCCGTGTGTTGTCACCATCTGTCTGTCTTAGTTCCCTGTC
TTAATTGTATAAGCTATCTGTCTCCATAGAGGGTAGATGTGCCCTGATCGTCTCTTTAAACTTA
GTACCGATCTCCCTACCTCCTGCCCATGTCTTCTTTGCTACTTGGAGCAGCCTCTCTGCTTTGT
GTATAAAACTAATGATGCTCTGTAGACTACCTAAATTAATAGGCACTGTGAATTTTTTTTTTCA
TGAGCAGGACCGAAGCAGCGATTTCACCATAGTTCTCTGTTGCCTAATGCATTGCTGGTTTCTA
TTCTAGGAATCAGCATTCTTTCAGGAAACATCTCTAGGGAATCCGTTTTTTTTTTTTTAATCTG
AAGGGAAGATAGTCTGTTTACACATCCCTACCAAATGCCATAGCAATAGTATATCTGATATTTT
GGATATGAGAGGGAAGGAAAATGCCATAATACAGTTGCAGAATAGACTATTACTTTCAAGTAGA
ATAGACTGATGCTTAAGAGTGTTGACGAATTCCTAATTCCCATGTTTATTTTTGATAGAAAGGC
AGTTGCTACTTTTGTTATTGGAAAAAGACATGTGTTAATCTCCATTCCCAAGCCCTAGAGCATG
AGCTGCATGTCAGAAATTTGTACAGCAATGCATTTACCCAGACGTAAATATTTGAAATTTAGAG
ATACCGTGAATCTTTTGATAACACCATTTATAGAATGCTGTAAATACCCAGAGATTTACGGTAA
GGAATTAATATGCTGTCTGGTGCTGCTGTTATTGACTGCAGTGTTGTACAGAATTTATCATGGA
TTTTTGCCTGCTGAAAATGGGACATTGAGATTTAGCCATTCCAAGGATTGTACTGGAAACTTCT
GCTACTGAATGTGACCGGATGTGACCGGTTTGTGTTCAGAAGAGTTCCCGCATTCTCTGAGGCA
TTTAAAGCTTGTAAAGAAATGGTGGCTGGAACTGAAATGGTGTTTGCCAAGGAAATATTCTGCT
TGTCGACAGACCAGAGTCCACAAAACAACTGTAAATACCAACGTGTGCATGGGTCCACCCTTCT
CACAGTCTCATAGCACAGGGAGCCACATTCATTGTCAGCATCTGTGAAGCTTCAAGAAATGCCC
ACAAGGCTCTGAATGGCTCCTCTCGGGCTCATGGTGGTTTTGCTGCAAATTACAGAGGGCAGTG
AATCCAATGTAGTATAGGTCTGTTTTCATTTCTTTTATTTGTACATTACGTGTTGTATCTACAA
ACACCGATTGCCTCATTTTCTTGCAAACCACTTATATATCCGCTTGTGAACTATGTTGTAAACT
TTTAGTGTCTACATAGAAATCTAACCATTTCTTAGTCATGTATTCATTTAGTTCTGGAACGCTG
TTACTATCTAGAAGACAGTCATCACCAGTATTCATAGTTTAAGTCTTTTGTCATTGTTACCTCA
ATTATAAATATTAAAAATATAAATTCTGGCAATGAGAATATTTTTTTATTAAATGATCAAGGAA
AATGTCAGTATATAGTAGAATATTATCAAATTATATCCTAAAATGTCTATTTTGCATAAAAGAG
ATATTCTTCAATCGATTCCTTTTTTTCGTGAGCTTTGTGGCTAATGAAGCGTGTGTTTGTCTTC
ATCACTGCTGTAGTTGAAACTGTGTAAGAGTTTTTCATCTTGCTTAATCAATATTTCCAGAATC
TATTAGTTCCCCTGGGATTCTGAATATACTCTATAGCCTAATTATAAACCCCTGTATCGTGTAC
CTTTTGTGACCATCTCAAGGTGCATGCCTAATCGTTGTGATAAGCCAATGGACATGTTACTAAC
TGAAATGAAGAATAAAAGTCAAACGATCTGGGGATAAACTTGAATCCTATCTGATTAAATGATT
CCTACCCTTC

hide sequence

RefSeq Acc Id:

XM_017594661 ⟹ XP_017450150

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	49,586,274 - 49,770,212 (+)	NCBI
mRatBN7.2	7	47,700,035 - 47,880,956 (+)	NCBI
Rnor_6.0	7	54,978,783 - 55,156,287 (+)	NCBI

Sequence:

show sequence

GGTGACTCTGGGCGCGGAGGGTGGCTATGGGAGAGCCCGCAGATCGCAGCAGCGTGAAGGCGGG
GAGCGCGGCGGGCGGCGGGCGGGGGCTGTTTCCCCGACCTCAGCACCCAGAGAAGCGGCTCAAC
CACCTGAACCCCGAAAACGCCAACAAGTAGTTTCTCCTTTGAGGAGGGCGGCTCAGCTGGCCAC
AGTGACTCCGTCCGACTGCAGGAAGAACCTCGTCCACACGGAGACCCAAGCAGATCCACTTTTC
TCCCGGTCTCCTTAAGTCATGTCTGAGCCACAGAGATGGGCAAGATCGAGAACAACGAGAGGGT
GATCCTCAATGTCGGAGGCACCAGGCACGAAACCTACCGCAGCACTCTCAAGACCCTTCCTGGA
ACTCGCCTGGCCCTTCTCGCCTCCTCTGAACCTCAGGGCGACTGCCTGACTGCTGCGGGTGACA
AGCTGCAGCCGCTGCCCCCTCCGCTGTCTCCACCGCCGCGACCGCCTCCCTTGTCCCCTGTCCC
CAGCGGCTGCTTCGAGGGCGGCGCAGGCAACTGCAGTTCGCACGGTGGCAATGGCAGCGACCAC
CCTGGGGGAGGCCGCGAATTCTTCTTCGATCGCCACCCAGGAGTCTTCGCCTATGTGCTCAACT
ACTACCGCACGGGCAAGCTGCACTGCCCCGCCGACGTGTGTGGACCGCTCTTCGAGGAAGAGCT
GGCATTCTGGGGCATCGATGAGACCGACGTGGAGCCCTGCTGCTGGATGACCTACAGGCAGCAC
CGGGACGCGGAGGAGGCCCTGGATATCTTCGAGACACCCGACCTCATCGGAGGCGACCCTGGTG
ATGATGAGGACCTAGGGGGCAAGAGACTGGGCATTGAGGATGCTGCGGGGCTGGGAGGACCCGA
TGGCAAGTCTGGCCGCTGGAGGAAGCTGCAGCCTCGCATGTGGGCTCTCTTTGAGGACCCCTAT
TCATCCAGAGCCGCTAGGTTTATTGCTTTTGCTTCTCTGTTCTTCATTTTGGTTTCCATCACAA
CCTTTTGCCTGGAGACACACGAAGCTTTCAATATTGTTAAAAACAAGACAGAGCCAGTCATCAA
CGGCACCAGCGCTGTTCTCCAGTATGAAATCGAAACGGATCCTGCCTTGACATATGTGGAAGGA
GTGTGTGTGGTGTGGTTTACTTTTGAATTTTTAGTCCGTATTGTTTTCTCGCCCAATAAACTTG
AGTTCATCAAAAATCTATTGAACATCATTGACTTTGTGGCCATCCTCCCCTTCTACTTAGAGGT
GGGACTCAGCGGGCTGTCTTCCAAAGCGGCTAAAGATGTGCTCGGCTTTCTCAGGGTGGTTAGG
TTTGTGAGGATCCTGAGAATCTTCAAGCTTACCCGCCATTTCGTAGGTCTGAGAGTGCTCGGAC
ACACTCTTCGTGCGAGCACCAATGAATTTTTGTTGCTGATCATCTTTCTGGCTCTGGGAGTTTT
GATATTCGCTACGATGATCTACTACGCTGAGCGAGTAGGGGCTCAACCTAATGATCCCTCAGCG
AGTGAGCACACACAGTTCAAAAACATCCCCATTGGTTTCTGGTGGGCTGTGGTGACCATGACTA
CCTTAGGCTATGGGGATATGTACCCCCAAACATGGTCAGGGATGTTGGTGGGGGCCTTGTGTGC
TCTGGCTGGAGTGCTGACCATAGCTATGCCTGTGCCCGTCATTGTCAACAATTTTGGGATGTAC
TACTCCTTGGCAATGGCGAAGCAGAAACTTCCAAGAAAAAGAAAGAAGCACATTCCTCCTGCCC
CTCTGGCAAGCTCACCTACATTTTGCAAGACAGAATTAAACATGGCTTGTAACAGTACCCAGAG
TGACACATGTCTGGGCAAAGAAAACCGGCTTCTGGAACATAACAGATCAGTGTTATCAGGTGAC
GACAGTACAGGAAGTGAGCCGCCATTATCACCTCCGGAAAGGCTCCCCATCAGACGCTCTAGTA
CCAGAGACAAAAACAGAAGAGGGGAAACATGTTTCCTGTTGACGACAGGTGATTACACGTGCGC
TTCTGATGGAGGAATCAGGAAAGCAAGCACACTAGAGCCCATGGAGAGTACTTCACAGACTAAA
GGAGACACGAGACCAGAAGCTCACTGGAATTGTGCGCATTTACTCAATTTTGGCTGTCCTACGG
GAAGTTCATTTCCCACCCTCTAAGTGTTCGGTGGAACTGCCAAACGTTTATTTCCAAAGCTGTG
TGGTGATAGGACTCCATTTTCATTCCCGTGTCTTGCTCTCCACGTTACGTCACGCTTTGTATGA
GACGCGCCCCCAGCTCATCCAGCTGCCTCTAATAGTCTACTGAAAATGCGTATGACTGCCTTCA
AAGGTCACAGGATGGGGTCCTGGTTGGAGTGGTTAGGGAAATCCACCAAGCTCGTGTTCCTGAG
AAGCTGTTTGATTATCTAAGTACACGGCTACCACCAACAATAGATTAGGTTGAGAATTATTGGT
TAAAACAAAATTGACCTTAGTTCGTGGAGGGAGAGGGAAAGAGAGGAAGTCATCTGCATACATC
AAATTCAGATCTATTTCGCTAAAATTATGACTCGGTTTACATTCCATTGGCTTCCTTTTTATTT
AATTTAATTTTATTACCTAAGGGATTGGTAATGTGCTTTCCATCCTGAATCACGTGGATAATGG
CACCCAATGCCATTATTCTATGAATCACTCTTTTAAACTAACTAGTAAACCTTAAAAATACATG
TTGGAAACAAGTGCACACTGTAGGTTAAGCATGCTTCATTAATTAATCATACTAAAATTTAAAA
GAATGTATCTCCTATATTTTTAATTTTTTAGAAACATGTCCTGAAAATTTAAAAGTGTTTAGTC
TGTAAACTTACTTAAGGGTTTTTTTTTTTTTTGGCCTAATTTTCAAAAGTTCTTGTAGTCTCTA
TGCCAAAATCATGTCAGTACTAATTATGATCGAGCATAAATATGTTTTGAAAGACTGTAGCTAT
AATTTGTTATAGCTGGTTTAATTTTTTTCAGAATGTGTGAATTGTGTCAATATTGAATTCTTTA
CAAATGGTTTTAGCTAAAAAAATTAGCACGTTGGGTTACCCTGCACAGTATTGTTTGTCTCTGT
CTATACTGGTTGAACTCAACTGATGTCTATGCATTTTTTCATGAAAGGATATGAAAAATCCCGA
AGCTTAAACAACATAGCGGGCTTGGCAGGCAATGCTCTGAGACTCTCTCCAGTAACATCCCCCT
ACAACTCTCCGT

hide sequence

RefSeq Acc Id:

XM_017594662 ⟹ XP_017450151

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	49,586,274 - 49,770,212 (+)	NCBI
mRatBN7.2	7	47,700,035 - 47,883,979 (+)	NCBI
Rnor_6.0	7	54,978,453 - 55,159,362 (+)	NCBI

Sequence:

show sequence

AAGAGTGCAGGTAGAGCTCCAGAGGGTGAGGATGCTGCTGCTTGTCTCAGATTCCCCAGACCCA
CCCACCCACTGTAGCTGTGTGCTCAGGCAAGCGGTGATGAAGGAACAGTTCTAGCAGAGGATGC
TTTCGGGCGGGGGTTGGGGGAGAACCAAATCTGTGGATCCAAATCTAAGCTGAGAGCCTTCACT
TTAAACTGGGTGAGCCTCCCTATACTCAGGTCAGCCTCCGCTCCAGACACAGCCAGCCAGGCTG
AAGGTCTGCAGCAGGGTCGGGCTGCGCCAGCTGGACCCGCCCCGAGCTCCATGGTTCGCCCAGC
CCCGCGCGATGGTGACTCTGGGCGCGGAGGGTGGCTATGGGAGAGCCCGCAGATCGCAGCAGCG
TGAAGGCGGGGAGCGCGGCGGGCGGCGGGCGGGGGCTGTTTCCCCGACCTCAGCACCCAGAGAA
GCGGCTCAACCACCTGAACCCCGAAAACGCCAACAAGTAGTTTCTCCTTTGAGGAGGGCGGCTC
AGCTGGCCACAGTGACTCCGTCCGACTGCAGGAAGAACCTCGTCCACACGGAGACCCAAGCAGA
TCCACTTTTCTCCCGGTCTCCTTAAGTCATGTCTGAGCCACAGAGATGGGCAAGATCGAGAACA
ACGAGAGGGTGATCCTCAATGTCGGAGGCACCAGGCACGAAACCTACCGCAGCACTCTCAAGAC
CCTTCCTGGAACTCGCCTGGCCCTTCTCGCCTCCTCTGAACCTCAGGGCGACTGCCTGACTGCT
GCGGGTGACAAGCTGCAGCCGCTGCCCCCTCCGCTGTCTCCACCGCCGCGACCGCCTCCCTTGT
CCCCTGTCCCCAGCGGCTGCTTCGAGGGCGGCGCAGGCAACTGCAGTTCGCACGGTGGCAATGG
CAGCGACCACCCTGGGGGAGGCCGCGAATTCTTCTTCGATCGCCACCCAGGAGTCTTCGCCTAT
GTGCTCAACTACTACCGCACGGGCAAGCTGCACTGCCCCGCCGACGTGTGTGGACCGCTCTTCG
AGGAAGAGCTGGCATTCTGGGGCATCGATGAGACCGACGTGGAGCCCTGCTGCTGGATGACCTA
CAGGCAGCACCGGGACGCGGAGGAGGCCCTGGATATCTTCGAGACACCCGACCTCATCGGAGGC
GACCCTGGTGATGATGAGGACCTAGGGGGCAAGAGACTGGGCATTGAGGATGCTGCGGGGCTGG
GAGGACCCGATGGCAAGTCTGGCCGCTGGAGGAAGCTGCAGCCTCGCATGTGGGCTCTCTTTGA
GGACCCCTATTCATCCAGAGCCGCTAGGTTTATTGCTTTTGCTTCTCTGTTCTTCATTTTGGTT
TCCATCACAACCTTTTGCCTGGAGACACACGAAGCTTTCAATATTGTTAAAAACAAGACAGAGC
CAGTCATCAACGGCACCAGCGCTGTTCTCCAGTATGAAATCGAAACGGATCCTGCCTTGACATA
TGTGGAAGGAGTGTGTGTGGTGTGGTTTACTTTTGAATTTTTAGTCCGTATTGTTTTCTCGCCC
AATAAACTTGAGTTCATCAAAAATCTATTGAACATCATTGACTTTGTGGCCATCCTCCCCTTCT
ACTTAGAGGTGGGACTCAGCGGGCTGTCTTCCAAAGCGGCTAAAGATGTGCTCGGCTTTCTCAG
GGTGGTTAGGTTTGTGAGGATCCTGAGAATCTTCAAGCTTACCCGCCATTTCGTAGGTCTGAGA
GTGCTCGGACACACTCTTCGTGCGAGCACCAATGAATTTTTGTTGCTGATCATCTTTCTGGCTC
TGGGAGTTTTGATATTCGCTACGATGATCTACTACGCTGAGCGAGTAGGGGCTCAACCTAATGA
TCCCTCAGCGAGTGAGCACACACAGTTCAAAAACATCCCCATTGGTTTCTGGTGGGCTGTGGTG
ACCATGACTACCTTAGGCTATGGGGATATGTACCCCCAAACATGGTCAGGGATGTTGGTGGGGG
CCTTGTGTGCTCTGGCTGGAGTGCTGACCATAGCTATGCCTGTGCCCGTCATTGTCAACAATTT
TGGGATGTACTACTCCTTGGCAATGGCGAAGCAGAAACTTCCAAGAAAAAGAAAGAAGCACATT
CCTCCTGCCCCTCTGGCAAGCTCACCTACATTTTGCAAGACAGAATTAAACATGGCTTGTAACA
GTACCCAGAGTGACACATGTCTGGGCAAAGAAAACCGGCTTCTGGAACATAACAGATCAGTGTT
ATCAGGTGACGACAGTACAGGAAGTGAGCCGCCATTATCACCTCCGGAAAGGCTCCCCATCAGA
CGCTCTAGTACCAGAGACAAAAACAGAAGAGGGGAAACATGTTTCCTGTTGACGACAGGTGATT
ACACGTGCGCTTCTGATGGAGGAATCAGGAAAGTGTTGTACAGAATTTATCATGGATTTTTGCC
TGCTGAAAATGGGACATTGAGATTTAGCCATTCCAAGGATTGTACTGGAAACTTCTGCTACTGA
ATGTGACCGGATGTGACCGGTTTGTGTTCAGAAGAGTTCCCGCATTCTCTGAGGCATTTAAAGC
TTGTAAAGAAATGGTGGCTGGAACTGAAATGGTGTTTGCCAAGGAAATATTCTGCTTGTCGACA
GACCAGAGTCCACAAAACAACTGTAAATACCAACGTGTGCATGGGTCCACCCTTCTCACAGTCT
CATAGCACAGGGAGCCACATTCATTGTCAGCATCTGTGAAGCTTCAAGAAATGCCCACAAGGCT
CTGAATGGCTCCTCTCGGGCTCATGGTGGTTTTGCTGCAAATTACAGAGGGCAGTGAATCCAAT
GTAGTATAGGTCTGTTTTCATTTCTTTTATTTGTACATTACGTGTTGTATCTACAAACACCGAT
TGCCTCATTTTCTTGCAAACCACTTATATATCCGCTTGTGAACTATGTTGTAAACTTTTAGTGT
CTACATAGAAATCTAACCATTTCTTAGTCATGTATTCATTTAGTTCTGGAACGCTGTTACTATC
TAGAAGACAGTCATCACCAGTATTCATAGTTTAAGTCTTTTGTCATTGTTACCTCAATTATAAA
TATTAAAAATATAAATTCTGGCAATGAGAATATTTTTTTATTAAATGATCAAGGAAAATGTCAG
TATATAGTAGAATATTATCAAATTATATCCTAAAATGTCTATTTTGCATAAAAGAGATATTCTT
CAATCGATTCCTTTTTTTCGTGAGCTTTGTGGCTAATGAAGCGTGTGTTTGTCTTCATCACTGC
TGTAGTTGAAACTGTGTAAGAGTTTTTCATCTTGCTTAATCAATATTTCCAGAATCTATTAGTT
CCCCTGGGATTCTGAATATACTCTATAGCCTAATTATAAACCCCTGTATCGTGTACCTTTTGTG
ACCATCTCAAGGTGCATGCCTAATCGTTGTGATAAGCCAATGGACATGTTACTAACTGAAATGA
AGAATAAAAGTCAAACGATCTGGGGATAAACTTGAATCCTATCTGATTAAATGATTCCTACCCT
TC

hide sequence

RefSeq Acc Id:

XM_039078411 ⟹ XP_038934339

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	49,586,274 - 49,770,212 (+)	NCBI
mRatBN7.2	7	47,700,035 - 47,883,979 (+)	NCBI

RefSeq Acc Id:

XM_039078412 ⟹ XP_038934340

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	49,586,274 - 49,767,181 (+)	NCBI
mRatBN7.2	7	47,700,035 - 47,883,979 (+)	NCBI

RefSeq Acc Id:

XM_039078413 ⟹ XP_038934341

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	49,586,274 - 49,770,212 (+)	NCBI
mRatBN7.2	7	47,700,035 - 47,883,979 (+)	NCBI

RefSeq Acc Id:

XM_039078416 ⟹ XP_038934344

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	49,586,274 - 49,770,212 (+)	NCBI
mRatBN7.2	7	47,700,035 - 47,883,979 (+)	NCBI

RefSeq Acc Id:

XR_005486545

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	49,586,274 - 49,769,130 (+)	NCBI
mRatBN7.2	7	47,700,035 - 47,882,895 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001426812	(Get FASTA)	NCBI Sequence Viewer
	NP_001426813	(Get FASTA)	NCBI Sequence Viewer
	NP_001426814	(Get FASTA)	NCBI Sequence Viewer
	NP_631962	(Get FASTA)	NCBI Sequence Viewer
	NP_631963	(Get FASTA)	NCBI Sequence Viewer
	XP_006241389	(Get FASTA)	NCBI Sequence Viewer
	XP_017450149	(Get FASTA)	NCBI Sequence Viewer
	XP_017450150	(Get FASTA)	NCBI Sequence Viewer
	XP_017450151	(Get FASTA)	NCBI Sequence Viewer
	XP_038934339	(Get FASTA)	NCBI Sequence Viewer
	XP_038934340	(Get FASTA)	NCBI Sequence Viewer
	XP_038934341	(Get FASTA)	NCBI Sequence Viewer
	XP_038934344	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA41819	(Get FASTA)	NCBI Sequence Viewer
	AAA41820	(Get FASTA)	NCBI Sequence Viewer
	AAA42142	(Get FASTA)	NCBI Sequence Viewer
	AAA42143	(Get FASTA)	NCBI Sequence Viewer
	CAE85434	(Get FASTA)	NCBI Sequence Viewer
	EDM16703	(Get FASTA)	NCBI Sequence Viewer
	EDM16704	(Get FASTA)	NCBI Sequence Viewer
	EDM16705	(Get FASTA)	NCBI Sequence Viewer
	EDM16706	(Get FASTA)	NCBI Sequence Viewer
	EDM16707	(Get FASTA)	NCBI Sequence Viewer
	EDM16708	(Get FASTA)	NCBI Sequence Viewer
	EDM16709	(Get FASTA)	NCBI Sequence Viewer
	EDM16710	(Get FASTA)	NCBI Sequence Viewer
	EDM16711	(Get FASTA)	NCBI Sequence Viewer
	EDM16712	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005690
	ENSRNOP00000005690.2
	ENSRNOP00000005773
	ENSRNOP00000005773.4
	ENSRNOP00000084708
	ENSRNOP00000084708.1
	ENSRNOP00000088724.1
GenBank Protein	P22462	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_631962 ⟸ NM_139216
- Peptide Label:	isoform a
- UniProtKB:	A6IGJ0 (UniProtKB/TrEMBL), A6IGI6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKIENNERVILNVGGTRHETYRSTLKTLPGTRLALLASSEPQGDCLTAAGDKLQPLPPPLSPP PRPPPLSPVPSGCFEGGAGNCSSHGGNGSDHPGGGREFFFDRHPGVFAYVLNYYRTGKLHCPAD VCGPLFEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDIFETPDLIGGDPGDDEDLGGKRLGI EDAAGLGGPDGKSGRWRKLQPRMWALFEDPYSSRAARFIAFASLFFILVSITTFCLETHEAFNI VKNKTEPVINGTSAVLQYEIETDPALTYVEGVCVVWFTFEFLVRIVFSPNKLEFIKNLLNIIDF VAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL LIIFLALGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPIGFWWAVVTMTTLGYGDMYPQTW SGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPRKRKKHIPPAPLASSPTFCKTE LNMACNSTQSDTCLGKENRLLEHNRSVLSGDDSTGSEPPLSPPERLPIRRSSTRDKNRRGETCF LLTTGDYTCASDGGIRKDNCKDVVITGYTQAEARSLT hide sequence

RefSeq Acc Id:	NP_631963 ⟸ NM_139217
- Peptide Label:	isoform b
- UniProtKB:	P22463 (UniProtKB/Swiss-Prot), P22461 (UniProtKB/Swiss-Prot), Q63735 (UniProtKB/Swiss-Prot), P22462 (UniProtKB/Swiss-Prot), A6IGJ3 (UniProtKB/TrEMBL), A6IGI6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKIENNERVILNVGGTRHETYRSTLKTLPGTRLALLASSEPQGDCLTAAGDKLQPLPPPLSPP PRPPPLSPVPSGCFEGGAGNCSSHGGNGSDHPGGGREFFFDRHPGVFAYVLNYYRTGKLHCPAD VCGPLFEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDIFETPDLIGGDPGDDEDLGGKRLGI EDAAGLGGPDGKSGRWRKLQPRMWALFEDPYSSRAARFIAFASLFFILVSITTFCLETHEAFNI VKNKTEPVINGTSAVLQYEIETDPALTYVEGVCVVWFTFEFLVRIVFSPNKLEFIKNLLNIIDF VAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL LIIFLALGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPIGFWWAVVTMTTLGYGDMYPQTW SGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPRKRKKHIPPAPLASSPTFCKTE LNMACNSTQSDTCLGKENRLLEHNRSVLSGDDSTGSEPPLSPPERLPIRRSSTRDKNRRGETCF LLTTGDYTCASDGGIRKGYEKSRSLNNIAGLAGNALRLSPVTSPYNSPCPLRRSRSPIPSIL hide sequence

RefSeq Acc Id:

XP_006241389 ⟸ XM_006241327

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGKIENNERVILNVGGTRHETYRSTLKTLPGTRLALLASSEPQGDCLTAAGDKLQPLPPPLSPP
PRPPPLSPVPSGCFEGGAGNCSSHGGNGSDHPGGGREFFFDRHPGVFAYVLNYYRTGKLHCPAD
VCGPLFEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDIFETPDLIGGDPGDDEDLGGKRLGI
EDAAGLGGPDGKSGRWRKLQPRMWALFEDPYSSRAARFIAFASLFFILVSITTFCLETHEAFNI
VKNKTEPVINGTSAVLQYEIETDPALTYVEGVCVVWFTFEFLVRIVFSPNKLEFIKNLLNIIDF
VAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL
LIIFLALGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPIGFWWAVVTMTTLGYGDMYPQTW
SGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPRKRKKHIPPAPLASSPTFCKTE
LNMACNSTQSDTCLGKENRLLEHNRSVLSGDDSTGSEPPLSPPERLPIRRSSTRDKNRRGETCF
LLTTGDYTCASDGGIRKGYEKSRSLNNIAGLAGNALRLSPVTSPYNSPCPLRRSRSPIPSIL

hide sequence

RefSeq Acc Id:

XP_017450151 ⟸ XM_017594662

- Peptide Label:

isoform X3

- Sequence:

show sequence

MGKIENNERVILNVGGTRHETYRSTLKTLPGTRLALLASSEPQGDCLTAAGDKLQPLPPPLSPP
PRPPPLSPVPSGCFEGGAGNCSSHGGNGSDHPGGGREFFFDRHPGVFAYVLNYYRTGKLHCPAD
VCGPLFEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDIFETPDLIGGDPGDDEDLGGKRLGI
EDAAGLGGPDGKSGRWRKLQPRMWALFEDPYSSRAARFIAFASLFFILVSITTFCLETHEAFNI
VKNKTEPVINGTSAVLQYEIETDPALTYVEGVCVVWFTFEFLVRIVFSPNKLEFIKNLLNIIDF
VAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL
LIIFLALGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPIGFWWAVVTMTTLGYGDMYPQTW
SGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPRKRKKHIPPAPLASSPTFCKTE
LNMACNSTQSDTCLGKENRLLEHNRSVLSGDDSTGSEPPLSPPERLPIRRSSTRDKNRRGETCF
LLTTGDYTCASDGGIRKVLYRIYHGFLPAENGTLRFSHSKDCTGNFCY

hide sequence

RefSeq Acc Id:

XP_017450150 ⟸ XM_017594661

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGKIENNERVILNVGGTRHETYRSTLKTLPGTRLALLASSEPQGDCLTAAGDKLQPLPPPLSPP
PRPPPLSPVPSGCFEGGAGNCSSHGGNGSDHPGGGREFFFDRHPGVFAYVLNYYRTGKLHCPAD
VCGPLFEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDIFETPDLIGGDPGDDEDLGGKRLGI
EDAAGLGGPDGKSGRWRKLQPRMWALFEDPYSSRAARFIAFASLFFILVSITTFCLETHEAFNI
VKNKTEPVINGTSAVLQYEIETDPALTYVEGVCVVWFTFEFLVRIVFSPNKLEFIKNLLNIIDF
VAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL
LIIFLALGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPIGFWWAVVTMTTLGYGDMYPQTW
SGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPRKRKKHIPPAPLASSPTFCKTE
LNMACNSTQSDTCLGKENRLLEHNRSVLSGDDSTGSEPPLSPPERLPIRRSSTRDKNRRGETCF
LLTTGDYTCASDGGIRKASTLEPMESTSQTKGDTRPEAHWNCAHLLNFGCPTGSSFPTL

hide sequence

RefSeq Acc Id:	XP_017450149 ⟸ XM_017594660
- Peptide Label:	isoform X1
- UniProtKB:	P22463 (UniProtKB/Swiss-Prot), P22461 (UniProtKB/Swiss-Prot), Q63735 (UniProtKB/Swiss-Prot), P22462 (UniProtKB/Swiss-Prot), A6IGJ3 (UniProtKB/TrEMBL), A6IGI6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKIENNERVILNVGGTRHETYRSTLKTLPGTRLALLASSEPQGDCLTAAGDKLQPLPPPLSPP PRPPPLSPVPSGCFEGGAGNCSSHGGNGSDHPGGGREFFFDRHPGVFAYVLNYYRTGKLHCPAD VCGPLFEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDIFETPDLIGGDPGDDEDLGGKRLGI EDAAGLGGPDGKSGRWRKLQPRMWALFEDPYSSRAARFIAFASLFFILVSITTFCLETHEAFNI VKNKTEPVINGTSAVLQYEIETDPALTYVEGVCVVWFTFEFLVRIVFSPNKLEFIKNLLNIIDF VAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL LIIFLALGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPIGFWWAVVTMTTLGYGDMYPQTW SGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPRKRKKHIPPAPLASSPTFCKTE LNMACNSTQSDTCLGKENRLLEHNRSVLSGDDSTGSEPPLSPPERLPIRRSSTRDKNRRGETCF LLTTGDYTCASDGGIRKGYEKSRSLNNIAGLAGNALRLSPVTSPYNSPCPLRRSRSPIPSIL hide sequence

Ensembl Acc Id:

ENSRNOP00000005690 ⟸ ENSRNOT00000005690

Ensembl Acc Id:

ENSRNOP00000005773 ⟸ ENSRNOT00000005773

RefSeq Acc Id:	XP_038934340 ⟸ XM_039078412
- Peptide Label:	isoform X5
- UniProtKB:	A6IGJ4 (UniProtKB/TrEMBL), A6IGI6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934341 ⟸ XM_039078413
- Peptide Label:	isoform X5
- UniProtKB:	A6IGJ4 (UniProtKB/TrEMBL), A6IGI6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934344 ⟸ XM_039078416
- Peptide Label:	isoform X5
- UniProtKB:	A6IGJ4 (UniProtKB/TrEMBL), A6IGI6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934339 ⟸ XM_039078411
- Peptide Label:	isoform X4
- UniProtKB:	A6IGJ0 (UniProtKB/TrEMBL), A6IGI6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000088724 ⟸ ENSRNOT00000105247

Ensembl Acc Id:

ENSRNOP00000084708 ⟸ ENSRNOT00000099049

Protein Domains

BTB Ion transport

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P22462-F1-model_v2	AlphaFold	P22462	1-638	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628829	AgrOrtholog
BioCyc Gene	G2FUF-34097	BioCyc
Ensembl Genes	ENSRNOG00000004077	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000005690	ENTREZGENE
	ENSRNOT00000005690.5	UniProtKB/Swiss-Prot
	ENSRNOT00000005773	ENTREZGENE
	ENSRNOT00000005773.8	UniProtKB/Swiss-Prot
	ENSRNOT00000099049	ENTREZGENE
	ENSRNOT00000099049.1	UniProtKB/Swiss-Prot
	ENSRNOT00000105247.1	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.287.70	UniProtKB/Swiss-Prot
	1.20.120.350	UniProtKB/Swiss-Prot
	Potassium Channel Kv1.1, Chain A	UniProtKB/Swiss-Prot
InterPro	BTB/POZ_dom	UniProtKB/Swiss-Prot
	Ion_trans_dom	UniProtKB/Swiss-Prot
	K_chnl_volt-dep_Kv	UniProtKB/Swiss-Prot
	K_chnl_volt-dep_Kv3	UniProtKB/Swiss-Prot
	SKP1/BTB/POZ_sf	UniProtKB/Swiss-Prot
	T1-type_BTB	UniProtKB/Swiss-Prot
	VG_K_chnl	UniProtKB/Swiss-Prot
	Volt_channel_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:246153	UniProtKB/Swiss-Prot
NCBI Gene	246153	ENTREZGENE
PANTHER	POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY C MEMBER 2	UniProtKB/Swiss-Prot
	PTHR11537	UniProtKB/Swiss-Prot
Pfam	BTB_2	UniProtKB/Swiss-Prot
	Ion_trans	UniProtKB/Swiss-Prot
PhenoGen	Kcnc2	PhenoGen
PRINTS	KCHANNEL	UniProtKB/Swiss-Prot
	KVCHANNEL	UniProtKB/Swiss-Prot
	SHAWCHANNEL	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000004077	RatGTEx
SMART	BTB	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54695	UniProtKB/Swiss-Prot
	Voltage-gated potassium channels	UniProtKB/Swiss-Prot
UniProt	A6IGI6	ENTREZGENE, UniProtKB/TrEMBL
	A6IGI7	ENTREZGENE, UniProtKB/TrEMBL
	A6IGJ0	ENTREZGENE, UniProtKB/TrEMBL
	A6IGJ3	ENTREZGENE, UniProtKB/TrEMBL
	A6IGJ4	ENTREZGENE, UniProtKB/TrEMBL
	A6IGJ5_RAT	UniProtKB/TrEMBL
	KCNC2_RAT	UniProtKB/Swiss-Prot
	P22461	ENTREZGENE
	P22462	ENTREZGENE
	P22463	ENTREZGENE
	Q63735	ENTREZGENE
UniProt Secondary	P22461	UniProtKB/Swiss-Prot
	P22463	UniProtKB/Swiss-Prot
	Q63735	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-11	Kcnc2	potassium voltage-gated channel subfamily C member 2	Kcnc2	potassium channel, voltage gated Shaw-related subfamily C, member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-01-26	Kcnc2	potassium channel, voltage gated Shaw-related subfamily C, member 2	Kcnc2	potassium voltage gated channel, Shaw-related subfamily, member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-02-26	Kcnc2	potassium voltage gated channel, Shaw-related subfamily, member 2			Symbol and Name status set to approved	625702	APPROVED
2003-02-27	Kcnc2	potassium voltage gated channel, Shaw-related subfamily, member 2			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	prominantly expressed in dorsal thalamus	729132

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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