Kidm47 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Kidm47 (Kidney mass QTL 47) Rattus norvegicus

Symbol: Kidm47
Name: Kidney mass QTL 47
RGD ID: 10059605
Previously known as: ln_relative_kidney_weight 7
Trait: kidney mass   (VT:0002707)    
Measurement Type: both kidneys wet weight to body weight ratio   (CMO:0000340)    
LOD Score: 2.91
P Value: 0.05
Variance: 12.5
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2747,251,783 - 65,728,867RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0754,534,996 - 73,293,934RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0754,558,231 - 73,468,910RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4750,833,677 - 69,975,631RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: ISIAH WAG/Nov 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Ptprb is a candidate Gene for Kidm47

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait
kidney mass  (IDA)

Rat Strain
ISIAH  (IEA)
WAG/Nov  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Candidate genes in quantitative trait loci associated with absolute and relative kidney weight in rats with Inherited Stress Induced Arterial Hypertension. Redina OE, etal., BMC Genet. 2015;16 Suppl 1:S1. doi: 10.1186/1471-2156-16-S1-S1. Epub 2015 Feb 2.
2. The genetic control of blood pressure and body composition in rats with stress-sensitive hypertension. Redina OE, etal., Clin Exp Hypertens. 2013;35(7):484-95. doi: 10.3109/10641963.2012.758274. Epub 2013 Jan 9.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3649Sdc2syndecan 276412718564239885Rat
3135Myo1amyosin IA76354298863557944Rat
619774Wif1Wnt inhibitory factor 175654806056618364Rat
62391Ddit3DNA-damage inducible transcript 376311564563121203Rat
70940Ridareactive intermediate imine deaminase A homolog76569142965705257Rat
2866Ifnginterferon gamma75390333953907375Rat
61903Gpr182G protein-coupled receptor 18276358599763589088Rat
3026Lyz2lysozyme 275290681052912154Rat
2185Avpr1aarginine vasopressin receptor 1A75811430658118230Rat
69192Cyp27b1cytochrome P450, family 27, subfamily b, polypeptide 176286934062876242Rat
3691Slc16a7solute carrier family 16 member 776104366761211547Rat
628795Usp15ubiquitin specific peptidase 1575875671458848778Rat
621667Grip1glutamate receptor interacting protein 175493485655592274Rat
620301Aviladvillin76282545962844103Rat
631332Tph2tryptophan hydroxylase 275068569450789424Rat
620650Rab3ipRAB3A interacting protein75253146152575295Rat
628829Kcnc2potassium voltage-gated channel subfamily C member 274770003547883979Rat
621711Pip4k2cphosphatidylinositol-5-phosphate 4-kinase type 2 gamma76302000463035086Rat
628844Agap2ArfGAP with GTPase domain, ankyrin repeat and PH domain 276289728262914295Rat
628723Nxph4neurexophilin 476336775863376579Rat
620728Kcnmb4potassium calcium-activated channel subfamily M regulatory beta subunit 475206614552119098Rat
620577Rap1bRAP1B, member of RAS oncogene family75342303953456349Rat
620780Ptprrprotein tyrosine phosphatase, receptor type, R75166259551929605Rat
621120Cdk4cyclin-dependent kinase 476288612462889562Rat
621160Nup107nucleoporin 10775335374053398345Rat
621194Inhbcinhibin subunit beta C76318414163197630Rat
621196Inhbeinhibin subunit beta E76317622163179209Rat
621201Rpl30ribosomal protein L3076564826665651401Rat
620479Cand1cullin-associated and neddylation-dissociated 175468111454719002Rat
728895Trhdethyrotropin-releasing hormone degrading enzyme74994327150350613Rat
620617Hmga2high mobility group AT-hook 275587714555998813Rat
1303150Rab21RAB21, member RAS oncogene family75090405050928890Rat
3809Tac3tachykinin precursor 376356255263569170Rat
735158Mterf3mitochondrial transcription termination factor 376382641863844747Rat
735050Rdh16retinol dehydrogenase 1676361671163625053Rat
628610Cpqcarboxypeptidase Q76426402564830867Rat
735173Tmbim4transmembrane BAX inhibitor motif containing 475571869055733277Rat
621673Gli1GLI family zinc finger 176315692663169579Rat
621783Tspan8tetraspanin 875144494651479360Rat
735209Tmem19transmembrane protein 1975095888450985601Rat
1304640Cpsf6cleavage and polyadenylation specific factor 675295658953001783Rat
735210Arhgef25Rho guanine nucleotide exchange factor 2576300593863013325Rat
1305255Tbc1d30TBC1 domain family, member 3075677957056869092Rat
1305562Xpotexportin for tRNA75711153657152013Rat
1305439Best3bestrophin 375258682452656776Rat
1306474RGD1306474similar to RIKEN cDNA 9530003J2375287584252880716Rat
1305741Yeats4YEATS domain containing 475285831352865454Rat
1306282Tmem186l1transmembrane protein 186l175355337853570587Rat
1306287Zfc3h1zinc finger, C3H1-type containing75100825151064666Rat
1307358Lrrc10leucine-rich repeat-containing 1075268697252688369Rat
1306532Zbtb39zinc finger and BTB domain containing 3976357699863584549Rat
1305877Gnsglucosamine (N-acetyl)-6-sulfatase75688914856923173Rat
1305332Mdm2MDM2 proto-oncogene75329066053315205Rat
1307733Lgr5leucine rich repeat containing G protein coupled receptor 575108705951221882Rat
1305342Arhgap9Rho GTPase activating protein 976314857363157025Rat
1305353Matn2matrilin 276549499665644613Rat
620992Mtdhmetadherin76530646465365647Rat
1305922Ptprbprotein tyrosine phosphatase, receptor type, B75195337552034751Rat
1311050Mbd6methyl-CpG binding domain protein 676310756263115841Rat
1310205Glipr1l2GLIPR1 like 274753300947546737Rat
1308949Ptdss1phosphatidylserine synthase 176384501763906791Rat
1303035Kif5akinesin family member 5A76305189463089024Rat
620490B4galnt1beta-1,4-N-acetyl-galactosaminyl transferase 176298842962996190Rat
1309876Tspan31tetraspanin 3176288955262892428Rat
1311971Uqcrbubiquinol-cytochrome c reductase binding protein76381478463820150Rat
631370Rdh7retinol dehydrogenase 776367601663689375Rat
1312039Dyrk2dual specificity tyrosine phosphorylation regulated kinase 275434872454381363Rat
1311450Rassf3Ras association domain family member 375693588857000554Rat
1311712Nab2Ngfi-A binding protein 276349758963504105Rat
1308609Pop1POP1 homolog, ribonuclease P/MRP subunit76570534865733143Rat
1310066R3hdm2R3H domain containing 276321251963340574Rat
1307535Lrp1LDL receptor related protein 176338032563461029Rat
1305978Glipr1GLI pathogenesis-related 174748734247498974Rat
1308201Frs2fibroblast growth factor receptor substrate 275271125552792738Rat
1308261LlphLLP homolog, long-term synaptic facilitation factor75573531755740341Rat
1309826Caps2calcyphosine 274758063647641598Rat
1309063Stat6signal transducer and activator of transcription 676348022963497551Rat
1309356Rxylt1ribitol xylosyltransferase 175777084157782695Rat
1305321Mars1methionyl-tRNA synthetase 176312114263138550Rat
1306183Krr1KRR1, small subunit processome component homolog74747555747486996Rat
1308846Irak3interleukin-1 receptor-associated kinase 375565394955714371Rat
1310532Cpmcarboxypeptidase M75322564753286220Rat
1308964Stac3SH3 and cysteine rich domain 376334307863350590Rat
1307920Tbc1d15TBC1 domain family, member 1575080455350860272Rat
1308808Mon2MON2 homolog, regulator of endosome-to-Golgi trafficking75864937858728102Rat
1308582Shmt2serine hydroxymethyltransferase 276335896163364293Rat
1309528Ppm1hprotein phosphatase, Mg2+/Mn2+ dependent, 1H75833866158599547Rat
1564883Rpl12a-ps1ribosomal protein L12, pseudogene 175236672652367448Rat
1565498Kics2KICSTOR subunit 275728421357299070Rat
1561812Rdh9retinol dehydrogenase 976364230563645149Rat
1563000Glipr1l1GLIPR1 like 174755063747577611Rat
1560103HelbDNA helicase B75558851055615979Rat
1561871Rps10-ps22ribosomal protein S10, pseudogene 2275677264656773237Rat
1564851Slc26a10solute carrier family 26, member 1076299516563005099Rat
1311672Cnot2CCR4-NOT transcription complex, subunit 275213044552222338Rat
1311262Tspyl5TSPY-like 576488150464885512Rat
1561092Mdm1Mdm1 nuclear protein75372960353766034Rat
628716Sdr9c7short chain dehydrogenase/reductase family 9C, member 776370378863720325Rat
1562127Myrflmyelin regulatory factor-like75240332452519907Rat
1303182Dctn2dynactin subunit 276309206163107560Rat
1559995Dppa5l1developmental pluripotency associated 5 like 176252504462526042Rat
1311853Laptm4blysosomal protein transmembrane 4 beta76543452565477386Rat
1359574Os9OS9, endoplasmic reticulum lectin76291549862957591Rat
1562404Rps18l3ribosomal protein S18 like 376514312765143670Rat
1566260Srgap1SLIT-ROBO Rho GTPase activating protein 175732953257594681Rat
1583210Spata1-ps1spermatogenesis associated 1, pseudogene 176498533164989584Rat
1587179Nemp1nuclear envelope integral membrane protein 176351402563538791Rat
1561292Il22interleukin 2275380120653805673Rat
1564876Slc35e3solute carrier family 35, member E375333709153350152Rat
1359143Cct2chaperonin containing TCP1 subunit 275269272552705478Rat
1565117Rps26l1ribosomal protein S26 like 176298168762982757Rat
1561255Lrig3leucine-rich repeats and immunoglobulin-like domains 376181631361866275Rat
1561648C7h12orf56similar to human chromosome 12 open reading frame 5675717040657220930Rat
1562607Styx-ps1serine/threonine/tyrosine interacting protein, pseudogene 175636338956364593Rat
1582946H3f3a-ps5H3.3 histone A, pseudogene 575252344852526265Rat
1566181Dtx3deltex E3 ubiquitin ligase 376301376963018431Rat
1588587Atp23ATP23 metallopeptidase and ATP synthase assembly factor homolog76271475262729893Rat
1588588Tbk1TANK-binding kinase 175707783057110868Rat
1593643Thap2THAP domain containing 275099291251007582Rat
1591678Rps17-ps10ribosomal protein S17, pseudogene 1076523948265239890Rat
1590540Erich5glutamate-rich 576565582965682221Rat
1590688Marchf9membrane associated ring-CH-type finger 976287901762882495Rat
1583261Limk2-ps1LIM domain kinase 2, pseudogene 176404610364047200Rat
1583275Esco2-ps1establishment of cohesion 1 homolog 2 (S. cerevisiae), pseudogene 176394820763951641Rat
1590711Eef1akmt3EEF1A lysine methyltransferase 376285330462864558Rat
1585306Arf1-ps4ADP-ribosylation factor 1, pseudogene 474972842149728965Rat
1595789Btf3-ps10basic transcription factor 3, pseudogene 1075054446450546990Rat
1591667Gltp-ps1glycolipid transfer protein, pseudogene 176524160465244954Rat
1594496Vps54-ps1vacuolar protein sorting 54 homolog (S. cerevisiae), pseudogene 175783223557834588Rat
1594497Rps12-ps4ribosomal protein S12, pseudogene75482751854827910Rat
1597418Mrpl47-ps1mitochondrial ribosomal protein L47, pseudogene 175284067952841539Rat
1596822Lemd3LEM domain containing 375641505356499047Rat
1589429Tafa2TAFA chemokine like family member 275894259859418640Rat
1596851Msrb3methionine sulfoxide reductase B375626098556426004Rat
1593616Lyc2lysozyme C type 275288710452894447Rat
1593036Mettl1methyltransferase 1, tRNA methylguanosine76286486062869202Rat
1593058TsfmTs translation elongation factor, mitochondrial76282899762864784Rat
1597472Rtcb-ps1RNA 2',3'-cyclic phosphate and 5'-OH ligase, pseudogene 175266985552671671Rat
1597752Tpt1-ps9tumor protein, translationally-controlled 1 pseudogene 976512195965122559Rat
1597486Park7-ps1Parkinsonism associated deglycase, pseudogene 176270611562706995Rat
1596425Taf7l-ps1TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 175176325951764401Rat
2301984Atxn7l3bataxin 7-like 3B74832245148325975Rat
2319209Ctdsp2CTD small phosphatase 276280539862825306Rat
2318153Coq4-ps1coenzyme Q4, pseudogene 176295901462959701Rat
2318888Rpl27a-ps2ribosomal protein L27a, pseudogene 274764285247675130Rat
2318367Pdia4-ps1protein disulfide isomerase family A, member 4, pseudogene 175224120052242264Rat
2322266Ghitm-ps2growth hormone inducible transmembrane protein, pseudogene 275715622057157537Rat
2324060Uqcr11l1ubiquinol-cytochrome c reductase, complex III subunit XI like 175487514454875314Rat
2325604Mirlet7imicroRNA let-7i75864248558642569Rat
2324558Ndufa4l2NDUFA4, mitochondrial complex associated like 276335102163359010Rat
6486766Tuba1b-ps5tubulin, alpha 1B, pseudogene 574856449248565895Rat
7514887LOC102549403uncharacterized LOC10254940375040092250423295Rat
7525893LOC102557532uncharacterized LOC10255753276270896262710729Rat
7542471LOC102547506uncharacterized LOC10254750675612579456140736Rat
7520545Eef1a1-ps12eukaryotic translation elongation factor 1 alpha 1, pseudogene 1276322731663228116Rat
7638646LOC102551482uncharacterized LOC10255148275150810351519060Rat
7654942LOC102552637uncharacterized LOC10255263776144449561496656Rat
7628604LOC102552423uncharacterized LOC10255242376149810261533554Rat
7570063LOC102549197uncharacterized LOC10254919776382025363826069Rat
7548711Tmed2-ps1transmembrane p24 trafficking protein 2, pseudogene 175776767257769695Rat
7695057LOC102552186uncharacterized LOC10255218676097594361088913Rat
7677619LOC102551386uncharacterized LOC10255138675149007851494499Rat
7677968LOC102549309uncharacterized LOC10254930975596419955977306Rat
7678454LOC102547249uncharacterized LOC10254724975599824456005560Rat
7725676LOC102550659uncharacterized LOC10255065975351829153525492Rat
7733495Ndufa13-ps3NADH:ubiquinone oxidoreductase subunit A13, pseudogene 375344091753441370Rat
7718419LOC102551023uncharacterized LOC10255102375371786953729789Rat
7709076LOC102546573uncharacterized LOC10254657374841026548417520Rat
7710554LOC102550217uncharacterized LOC10255021775316179253172907Rat
9117410LOC103692876small ubiquitin-related modifier 2 pseudogene75387473853875151Rat
9336170LOC103692875translationally-controlled tumor protein pseudogene76436642264373306Rat
9406127LOC103692856nuclear cap-binding protein subunit 2 pseudogene75073889650747463Rat
9685075Snora19small nucleolar RNA, H/ACA box 1975878050358780571Rat
11465430Gapdh-ps23Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 2376313856463142507Rat
11466148Snurfl1SNRPN upstream open reading frame like 175871471358716587Rat
11428166LOC108351461uncharacterized LOC10835146175333234453341706Rat
11429701LOC108351463uncharacterized LOC10835146375367989253695346Rat
11431842LOC108351450uncharacterized LOC10835145074744578247461331Rat
11414169LOC108351454uncharacterized LOC10835145474941918049434582Rat
11427685LOC108351449uncharacterized LOC10835144974732740847337493Rat
11410267Hnrnpa1-ps42heterogeneous nuclear ribonucleoprotein A1, pseudogene 4275104580151047650Rat
11399049LOC108351471uncharacterized LOC10835147176268101762702138Rat
11399716LOC108351472uncharacterized LOC10835147276280038462804985Rat
11389551LOC108351462uncharacterized LOC10835146275361951753629569Rat
11502995LOC108351467uncharacterized LOC10835146775608042056091186Rat
41354498LOC120093599uncharacterized LOC12009359975267695752685404Rat
41235016LOC120093617uncharacterized LOC12009361775651237956527620Rat
41355956LOC120093594uncharacterized LOC12009359475186252251881220Rat
41089710LOC120093959small nucleolar RNA SNORA4475101910851019230Rat
41113964LOC120093938U7 small nuclear RNA75147428051474337Rat
41359680LOC120093628uncharacterized LOC12009362876275332662760239Rat
41090800LOC120093075retinol dehydrogenase 16-like76360472863613424Rat
41116110Sfr1-ps1SWI5-dependent homologous recombination repair protein 1, pseudogene 175345838153461341Rat
41286435LOC120093600uncharacterized LOC12009360075279287152805208Rat
41286787Crb1-ps3crumbs cell polarity complex component 1, pseudogene 375958331659598561Rat
41208259LOC120093590uncharacterized LOC12009359075043309750440570Rat
41260607LOC120093614uncharacterized LOC12009361475597827655988331Rat
41364015LOC120093852uncharacterized LOC12009385276542170165423066Rat
41120201LOC120093592uncharacterized LOC12009359275152912251541332Rat
41120395LOC120093598uncharacterized LOC12009359875263629252640179Rat
41120670Trnat-agu25transfer RNA threonine (anticodon AGU) 2575036331750363395Rat
41150806LOC120093616uncharacterized LOC12009361675617856356194792Rat
41098017LOC120093919U6 spliceosomal RNA74817766848177762Rat
41098039LOC120093624uncharacterized LOC12009362475952784359540971Rat
41179485LOC120093869sentrin-specific protease 2-like75770148357703091Rat
41214652Trnap-agg57transfer RNA proline (anticodon AGG) 5775110298851103061Rat
41394217LOC120093612uncharacterized LOC12009361275488826954901551Rat
41180745LOC120093589uncharacterized LOC12009358975035015950370342Rat
41181996LOC120093613uncharacterized LOC12009361375591315555941962Rat
41192745LOC120094055U6 spliceosomal RNA76444494264445048Rat
41182883LOC120093916U6 spliceosomal RNA76517002665170131Rat
41268730LOC120093851uncharacterized LOC12009385175420826754212875Rat
41346314LOC120093850MICOS complex subunit Mic10-like75107619551079347Rat
41397689LOC120093603uncharacterized LOC12009360375322943553235643Rat
41103456LOC120093607uncharacterized LOC12009360775349040553495755Rat
41127999LOC120093601uncharacterized LOC12009360175303123153044412Rat
41348715LOC120093805uncharacterized LOC12009380576344527163453892Rat
41349511LOC120093868sentrin-specific protease 2-like75767292357674377Rat
41374847LOC120093989small nucleolar RNA SNORA1775611925456119374Rat
41375035LOC120093987small nucleolar RNA SNORA1775967884959678980Rat
41163580LOC120093602uncharacterized LOC12009360275315392053159148Rat
41375281LOC120093587uncharacterized LOC12009358774734474247363207Rat
41084931LOC12009359139S ribosomal protein L50, mitochondrial-like75119307151213603Rat
41109545Rdh16-ps1retinol dehydrogenase 16, pseudogene 176362868663638448Rat
41166350LOC120093606uncharacterized LOC12009360675346869753474503Rat
40972102LOC120093596uncharacterized LOC12009359675231948552323305Rat
40973776LOC120093620uncharacterized LOC12009362075733351357348361Rat
40974068LOC120093619uncharacterized LOC12009361975686911656871824Rat
40952871LOC120093870basic proline-rich protein-like75944207559443292Rat
40928360LOC1200938965S ribosomal RNA76384051063840625Rat
41001841LOC120093944small nucleolar RNA SNORA7276564875865648889Rat
40988719LOC120093981small nucleolar RNA SNORA1776268242462682554Rat
40939206Ftl1-ps8ferritin light chain 1, pseudogene 876082544560837640Rat
40991943LOC120093626uncharacterized LOC12009362676193670861940112Rat
40943516LOC120093867sentrin-specific protease 2-like75760698957608641Rat
41075389LOC120093627uncharacterized LOC12009362776262278762636248Rat
41052312LOC120093802uncharacterized LOC12009380275535615855359497Rat
41319368LOC120093615uncharacterized LOC12009361575617003956172387Rat
41135449LOC120093865basic proline-rich protein-like75354472253546293Rat
41034435Trnat-agu22transfer RNA threonine (anticodon AGU) 2276256550262565574Rat
41225140LOC120093621sentrin-specific protease 2-like75774299757743814Rat
41061317LOC120093899U6 spliceosomal RNA75312126853121371Rat
41226631LOC120093957small nucleolar RNA SNORA2876564737865647501Rat
41303428LOC120093804uncharacterized LOC12009380476319268763199370Rat
41016237LOC120093975small nucleolar RNA SNORA4875293013352930274Rat
41067915LOC120093917U6 spliceosomal RNA76323651363236622Rat
41067918LOC120093595uncharacterized LOC12009359575189986351919776Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10221D7Arb1775811322458113450Ratregion
10880D7Mgh2212475288832652888450Ratregion
34634D4Mgh538375811434658114729Ratregion
36099D7Rat2515775679321056793354Ratregion
36317D7Rat16617475922594759226115Ratregion
37236D7Rat5112674725178347251899Ratregion
35180D7Rat4317076173665261736830Ratregion
37838D7Rat7513376376898163769114Ratregion
37838D7Rat7513376377335763773500Ratregion
34789D7Rat4613174875897948759110Ratregion
34999D7Rat4416276200445262004598Ratregion
35749D7Rat4517476390260863902784Ratregion
39614D7Rat16723775310609653106333Ratregion
39830D7Rat16324676503798665038228Ratregion
39884D7Rat16921174771946647719673Ratregion
38198D7Rat6923076046045260460686Ratregion
38754D7Rat5721775920106959201286Ratregion
40058D7Rat14615075361691753617069Ratregion
40164D7Rat16413476528724765287381Ratregion
38794D7Rat7323375361271453612950Ratregion
39012D7Rat9824674975349649753746Ratregion
39094D7Rat5824575826487858265113Ratregion
39480D7Rat16521776572863465728867Ratregion
42828D7Rat20920375762948357629662Ratregion
42830D7Rat20724175664188756642142Ratregion
42831D7Rat22814975797580457975951Ratregion
42339D7Rat22024775853205558532298Ratregion
42340D7Rat23014676329436763294498Ratregion
40862D7Rat14511876129036361290481Ratregion
44253D7Got8328574796220047962485Ratregion
44255D7Got3912874913859049138718Ratregion
44256D7Got919974887586048875959Ratregion
44257D7Got8017175003291450033085Ratregion
44258D7Got14816675141562751415793Ratregion
44259D7Got4016775410309154103255Ratregion
44262D7Got4426075852809758528354Ratregion
44265D7Got4126475485817054858434Ratregion
44266D7Got4924775476962754769874Ratregion
44267D7Got4814275814366558143807Ratregion
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60574D7Got4318475665361656653800Ratregion
60819D7Wox319176400245764002648Ratregion
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1631140D7Got21014476247463062474774Ratregion
1632072D7Wox3312674994751949947647Ratregion
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1579067D10Chm25021875014650150146536Ratregion
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1629834D7Got23927176356929563569566Ratregion
1629994D7Got22019276406273664062926Ratregion
1630048D7M6Mit12322476548435465484578Ratregion
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1641372D7Got2089776015611560156212Ratregion
1632848D7Got23715675168505351685209Ratregion
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1635099D14Got14710076409441164094511Ratregion
1635099D14Got14710076409441164094511Ratregion
1635752D7Got20617575539314155393316Ratregion
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1637797D7Got23223176257861262578840Ratregion
7205956Dyrk249775435474354355240Ratregion
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7206048Tmed239275776912957769525Ratregion
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5035759WI-1975125475269275052693004Ratregion
5036141D10Wsu93e25176310766163107912Ratregion
7206518UniSTS:54684293475108878451089718Ratregion
5036223RH12564827475121044851210722Ratregion
5039172RH12755320876291735262917560Ratregion
5036609AU04858517676172405261724228Ratregion
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5031306PMC133987P134976336376763364116Ratregion
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5026138RH13105822075036817250368392Ratregion
5026230RH131414075875832358758425Ratregion
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5026256RH13151318075192939551929575Ratregion
5026320RH13176018376536390765364090Ratregion
5029043RH14329921575100725751007472Ratregion
5026460RH13229815775068569550685852Ratregion
5026496RH13243520175691730756918843Ratregion
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5029331RH14439112376381427263814395Ratregion
5032189RH12636420376300245163002654Ratregion
5034708BI28201220675328450353284709Ratregion
5034744BI27661817575642136956421544Ratregion
5029488AI50193721575941814159418356Ratregion
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5029857AW53062219975734813357348332Ratregion
5032785RH13529220376358539963585602Ratregion
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5032927RH13699518176390890563909086Ratregion
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5025296RH12777619976472422664724425Ratregion
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5025540RH12871919375342312353423316Ratregion
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5028253D4Mit3536875900140359001471Ratregion
5028513AU04228512975692298256923111Ratregion
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5052109RH9484519075390486853905058Ratregion
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5057410AA99651818975271130752711496Ratregion
5059446AW53085119675555148955551685Ratregion
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5048906RH13317418075735911557359295Ratregion
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5078470RH14036120576311986563120070Ratregion
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5070930RH13478820176568391865684119Ratregion
5073320RH13736821975391665453916873Ratregion
5073320RH13736821975391665453916873Ratregion
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5068668AU04700520176014162860141829Ratregion
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5070241RH9455316375288746852887631Ratregion
5070241RH9455316375288746852887631Ratregion
5070241RH9455316375291157852911741Ratregion
5070241RH9455316375291157852911741Ratregion
5070352AI8431919775391690553917002Ratregion
5070352AI8431919775391690553917002Ratregion
5069752AU02912523276257861562578851Ratregion
5069806AU04793122776187412561874352Ratregion
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5069350AU04655514974772116747721291Ratregion
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5063716BF40463610774788122347881330Ratregion
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5062542BF40339810375844504458445147Ratregion
5064264BE12093217575734416357344338Ratregion
5062044BE10609721276371409963714311Ratregion
5065416BE11541518975295857552958764Ratregion
5062312BI28868918675337195953372145Ratregion
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5061054BF4018929175345689253456983Ratregion
5064514BI30221320975006860450068813Ratregion
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5066328PMC152658P271876312025763120975Ratregion
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5084310AI17650519475106414251064336Ratregion
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5086183BM38473817975236933052369509Ratregion
5086220AI10328018475253084952531033Ratregion
5087026BQ20825218775434776654347953Ratregion
5087044BM38911821975333695053337169Ratregion
5087118AA80079918974832260048322789Ratregion
5089073AU04893917276406273964062909Ratregion
5089211AU04902116775541462955414796Ratregion
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5083251BF41703121475147700051477214Ratregion
5088583AU04865627174760635047606621Ratregion
5089653AU04928315875293056352930721Ratregion
5084878AA80018417575875681158756986Ratregion
5082265BE11908216275561308455613246Ratregion
5082451BE11943315475753587957536033Ratregion
5088359AU04852220974909550049095709Ratregion
5085367BQ21008916575650133556501500Ratregion
5090385AU04971927175462774454629303Ratregion
5081368AI02972821275284076952840981Ratregion
5090099AU04954921575757526157575476Ratregion
5090155AU04958329474729238447292678Ratregion
5089125AU04896817475504268155042855Ratregion
5080940RH14187120075290621752906417Ratregion
5081202RH14202318176299630262996926Ratregion
5083109BI28174821375865120358651416Ratregion
5083241BI27573117975468136954681548Ratregion
5085246AI59847022075108784051088060Ratregion
5085892BE09964618075090130950901489Ratregion
5084036AI01167717775340686353407040Ratregion
5134356D7Uwm2425675168502951685285Ratregion
5504196UniSTS:25969387876315882863159707Ratregion
5503664UniSTS:46547840376315709963157502Ratregion
5503788UniSTS:471082136475268698852688352Ratregion
5504466PMC212738P37176288692062887122Ratregion
5504813ha2151129475730565957306635Ratregion
5505239Shmt27076336127963361349Ratregion
5505294Lgr5131375108968251090995Ratregion
5505514DXS1232076070644760707416Ratregion
5507027fk81g07.x197474973636649736538Ratregion
5507091UniSTS:224451076349766363497833Ratregion
5500055UniSTS:23647313475571921355719347Ratregion
5503019B4galnt121776299009162990920Ratregion
5500575RH13603120775267111652671323Ratregion
5500523RH13587015076536410065364250Ratregion
5503700MARC_36444-36445:1067884409:185875269638652697244Ratregion
5501147PMC150726P430476312076363121067Ratregion
5501436Snrpn35875871475758715094Ratregion
5501472D7S22468475331391853314002Ratregion
5501734MARC_10159-10160:996678914:110076564149265641903Ratregion
5502427RH12481212076536314365363263Ratregion
5502895Kif5a170076305662163058321Ratregion
Position Markers

Flank 1: (D7Rat51)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2747,251,783 - 47,251,899 (+)MAPPER
Rnor_6.0754,534,996 - 54,535,111NCBI
Rnor_5.0754,558,231 - 54,558,346UniSTS
RGSC_v3.4750,833,678 - 50,833,793UniSTS
RGSC_v3.4750,833,677 - 50,833,793RGD
RGSC_v3.1750,854,120 - 50,854,235RGD
Celera744,051,160 - 44,051,275UniSTS
RH 3.4 Map7412.9RGD
RH 3.4 Map7412.9UniSTS
RH 2.0 Map7380.4RGD
SHRSP x BN Map731.05RGD
Flank 2: (D7Rat165)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2765,728,634 - 65,728,867 (+)MAPPER
Rnor_6.0773,293,702 - 73,293,934NCBI
Rnor_5.0773,468,678 - 73,468,910UniSTS
RGSC_v3.4769,975,398 - 69,975,631RGD
RGSC_v3.4769,975,399 - 69,975,631UniSTS
RGSC_v3.1769,995,901 - 69,996,450RGD
Celera762,829,630 - 62,829,862UniSTS
FHH x ACI Map734.52RGD
FHH x ACI Map734.52UniSTS
Cytogenetic Map7q22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)72940968353612950Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
2303629Vencon3Ventilatory control QTL 37.25respiration trait (VT:0001943)respiration rate (CMO:0000289)74110969256793354Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
61435Cia4Collagen induced arthritis QTL 45.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)75811322462004598Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general measurement method: animals were maintained under normal conditions, both kidneys were weighed and relative kidney weight calculated as kidney weights/100g body weight 10053637
qtl_general number of animals used: 126, 6 months old F2 males 10053637
qtl_general software package used: ANOVA, MAPMAKER/EXP 3.0, MAPMAKER/QTL 1.1 10053637
qtl_general confidence interval: 40-76 Mb 10053637