Mmp3 (matrix metallopeptidase 3) - Rat Genome Database

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Gene: Mmp3 (matrix metallopeptidase 3) Rattus norvegicus
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Symbol: Mmp3
Name: matrix metallopeptidase 3
RGD ID: 621317
Description: Predicted to enable metalloendopeptidase activity. Involved in several processes, including cellular response to cell-matrix adhesion; cellular response to interleukin-1; and response to estradiol. Located in cell body; dendrite; and extracellular space. Part of protein-containing complex. Biomarker of several diseases, including abdominal aortic aneurysm; degenerative disc disease; gastric ulcer; glomerulonephritis (multiple); and type 2 diabetes mellitus. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); carcinoma (multiple); end stage renal disease; osteoarthritis; and von Hippel-Lindau disease. Orthologous to human MMP3 (matrix metallopeptidase 3); PARTICIPATES IN rheumatoid arthritis pathway; INTERACTS WITH (+)-schisandrin B; (S)-nicotine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: matrix metalloproteinase 3; matrix metalloproteinase-3; MMP-3; PTR1 protein; SL-1; stromelysin-1; transin-1
RGD Orthologs
Human
Mouse
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8812,925,267 - 12,938,828 (+)NCBIGRCr8
mRatBN7.284,640,397 - 4,653,963 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl84,640,416 - 4,653,961 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx88,600,140 - 8,613,640 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.086,897,910 - 6,911,412 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.084,900,079 - 4,913,622 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.085,676,608 - 5,698,579 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl85,676,665 - 5,698,579 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.085,680,382 - 5,701,427 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.484,315,601 - 4,329,146 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.184,315,600 - 4,329,146 (+)NCBI
Celera86,200,234 - 6,213,783 (+)NCBICelera
Cytogenetic Map8q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
Species
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Original Reference(s)
Mmp3Ratabdominal aortic aneurysm  IEP 1302825protein:increased expression:aorta (rat)RGD 
Mmp3RatAcute Otitis Media  ISOMmp3 (Mus musculus)127284853mRNA:increased expression:middle ear (mouse)RGD 
Mmp3Ratallergic contact dermatitis  IEP 2325935mRNA:increased expression:skin and lymph nodeRGD 
Mmp3Ratallergic contact dermatitis  ISOMmp3 (Mus musculus)8693317 RGD 
Mmp3RatAlport syndrome  ISOMMP3 (Homo sapiens) and Mmp3 (Mus musculus)7241252protein:increased expression:kidneyRGD 
Mmp3Ratarteriosclerosis  ISOMMP3 (Homo sapiens)1580550 RGD 
Mmp3Ratatrial fibrillation  ISOMMP3 (Homo sapiens)8693675 RGD 
Mmp3RatBrain Hypoxia-Ischemia treatmentIEP 8694100 RGD 
Mmp3Ratbreast cancer  ISOMMP3 (Homo sapiens)8693321 RGD 
Mmp3RatCarotid Artery Injuries  IEP 8547910 RGD 
Mmp3Ratcarotid stenosis  ISOMMP3 (Homo sapiens)1580553 RGD 
Mmp3Ratcartilage disease  IEP 2325860mRNA:increased expression:articular cartilageRGD 
Mmp3Ratcataract  ISOMMP3 (Homo sapiens)8693669 RGD 
Mmp3RatChronic Allograft Nephropathy  ISOMMP3 (Homo sapiens)7241226 RGD 
Mmp3Ratcognitive disorder  IEP 8694114protein:increased expression:brainRGD 
Mmp3Ratcolon cancer treatmentIEP 2316492 RGD 
Mmp3RatColorectal Neoplasms susceptibilityISOMMP3 (Homo sapiens)7207065DNA:insertion and haplotype:promoter:g.-1612insA (human)RGD 
Mmp3Ratcongestive heart failure  ISOMMP3 (Homo sapiens)8694112protein:increased expression:heart left ventricle and plasmaRGD 
Mmp3Ratconjunctivochalasis  ISOMMP3 (Homo sapiens)8693314protein:increased expression:conjunctivaRGD 
Mmp3Ratcoronary artery disease  ISOMMP3 (Homo sapiens)7207049DNA:insertion and haplotype:promoter:g.-1613insA rs3025058 (human)RGD 
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Original Reference(s)
Mmp3Ratasphyxiating thoracic dystrophy  ISOMMP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Jeune thoracic dystrophyClinVarPMID:23339108 more ...
Mmp3Ratataxia telangiectasia  ISOMMP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Ataxia-telangiectasia syndromeClinVarPMID:23807571 more ...
Mmp3RatCoronary Disease  ISOMMP3 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10190398 more ...
Mmp3Ratintellectual disability  ISOMMP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
1 to 13 of 13 rows
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Original Reference(s)
Mmp3RatBreast Neoplasms  ISOMMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16298037
Mmp3Ratceliac disease  ISOMMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:30097691
Mmp3RatCerebral Hemorrhage  ISOMMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17971790
Mmp3Ratcoronary artery disease  ISOMMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:8662692
Mmp3RatCoronary Disease  ISOMMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Mmp3Ratcoronary restenosis  ISOMMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:8662692
Mmp3RatExperimental Arthritis  ISOMMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20974942
Mmp3RatHyperalgesia  ISOMMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18754875
Mmp3Ratidiopathic pulmonary fibrosis  ISOMMP3 (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:28434932
Mmp3Ratmalignant astrocytoma  ISOMMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20188714
Mmp3RatNeoplasm Invasiveness  ISOMMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20188714 and PMID:26284488
Mmp3Ratperipheral nervous system disease  ISOMMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18754875
Mmp3Ratpulmonary tuberculosis  ISOMMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24890593
1 to 13 of 13 rows
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Original Reference(s)
Mmp3RatCoronary Disease susceptibilityISOMMP3 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Mmp3Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of MMP3 mRNA]CTDPMID:31150632
Mmp3Rat(-)-citrinin multiple interactionsISOMMP3 (Homo sapiens)6480464pyrazolanthrone inhibits the reaction [Citrinin results in increased expression of MMP3 mRNA]CTDPMID:19361540
Mmp3Rat(-)-citrinin increases expressionISOMMP3 (Homo sapiens)6480464Citrinin results in increased expression of MMP3 mRNACTDPMID:19361540
Mmp3Rat(R)-lipoic acid multiple interactionsISOMMP3 (Homo sapiens)6480464Thioctic Acid inhibits the reaction [IL1B protein results in increased expression of MMP3 mRNA] and Thioctic Acid inhibits the reaction [IL1B protein results in increased expression of MMP3 protein]CTDPMID:24975507
Mmp3Rat(S)-nicotine multiple interactionsISOMMP3 (Homo sapiens)6480464lipopolysaccharide more ...CTDPMID:18986645 and PMID:39098741
Mmp3Rat(S)-nicotine increases expressionEXP 6480464Nicotine results in increased expression of MMP3 mRNACTDPMID:39098741
Mmp3Rat(S)-nicotine increases expressionISOMMP3 (Homo sapiens)6480464Nicotine results in increased expression of MMP3 mRNA and Nicotine results in increased expression of MMP3 proteinCTDPMID:17151781 more ...
Mmp3Rat1,2-dichloroethane decreases expressionISOMmp3 (Mus musculus)6480464ethylene dichloride results in decreased expression of MMP3 mRNACTDPMID:28960355
Mmp3Rat1-chloro-2,4-dinitrobenzene increases expressionISOMMP3 (Homo sapiens)6480464Dinitrochlorobenzene results in increased expression of MMP3 mRNACTDPMID:20146380
Mmp3Rat1-naphthyl isothiocyanate increases expressionISOMmp3 (Mus musculus)64804641-Naphthylisothiocyanate results in increased expression of MMP3 mRNACTDPMID:15913567
Mmp3Rat17alpha-ethynylestradiol affects expressionISOMmp3 (Mus musculus)6480464Ethinyl Estradiol affects the expression of MMP3 mRNACTDPMID:17555576
Mmp3Rat17alpha-ethynylestradiol multiple interactionsEXP 6480464[Ethinyl Estradiol co-treated with Megestrol Acetate] results in increased expression of MMP3 proteinCTDPMID:22085904
Mmp3Rat17alpha-ethynylestradiol multiple interactionsISOMmp3 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of MMP3 mRNACTDPMID:17942748
Mmp3Rat17alpha-ethynylestradiol increases expressionISOMmp3 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of MMP3 mRNACTDPMID:17942748
Mmp3Rat17beta-estradiol increases expressionISOMMP3 (Homo sapiens)6480464Estradiol results in increased expression of MMP3 mRNACTDPMID:20106945
Mmp3Rat17beta-estradiol decreases expressionISOMMP3 (Homo sapiens)6480464Estradiol results in decreased expression of MMP3 mRNACTDPMID:25878060
Mmp3Rat17beta-estradiol multiple interactionsISOMmp3 (Mus musculus)6480464bisphenol A inhibits the reaction [Estradiol results in decreased expression of MMP3 mRNA] and Progesterone inhibits the reaction [Estradiol results in increased expression of MMP3 mRNA]CTDPMID:19416213 and PMID:27312807
Mmp3Rat17beta-estradiol increases expressionISOMmp3 (Mus musculus)6480464Estradiol results in increased expression of MMP3 mRNACTDPMID:19416213 and PMID:19484750
Mmp3Rat17beta-estradiol decreases expressionISOMmp3 (Mus musculus)6480464Estradiol results in decreased expression of MMP3 mRNACTDPMID:19693291 and PMID:27312807
Mmp3Rat17beta-estradiol multiple interactionsISOMMP3 (Homo sapiens)6480464[Estradiol co-treated with Progesterone] results in decreased secretion of MMP3 protein more ...CTDPMID:16009159 more ...

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Biological Process
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Original Reference(s)
Mmp3Ratcellular response to amino acid stimulus involved_inIEAUniProtKB:P28862 and ensembl:ENSMUSP000000344971600115GO_REF:0000107EnsemblGO_REF:0000107
Mmp3Ratcellular response to amino acid stimulus acts_upstream_of_or_withinISOMmp3 (Mus musculus)1624291 PMID:20548288RGDPMID:20548288
Mmp3Ratcellular response to cell-matrix adhesion  IEP 2325968 RGD 
Mmp3Ratcellular response to interleukin-1  IEP 2313720Il-1betaRGD 
Mmp3Ratcellular response to reactive oxygen species involved_inIEAUniProtKB:P28862 and ensembl:ENSMUSP000000344971600115GO_REF:0000107EnsemblGO_REF:0000107
Mmp3Ratcellular response to reactive oxygen species involved_inISOMmp3 (Mus musculus)1624291 PMID:20969476RGDPMID:20969476
Mmp3Ratcellular response to UV-A involved_inISOMMP3 (Homo sapiens)1624291 PMID:31380578RGDPMID:31380578
Mmp3Ratcellular response to UV-A involved_inIEAUniProtKB:P08254 and ensembl:ENSP000002998551600115GO_REF:0000107EnsemblGO_REF:0000107
Mmp3Ratcellular response to UV-A involved_inISSUniProtKB:P082541600115GO_REF:0000024UniProtGO_REF:0000024
Mmp3Ratcollagen catabolic process involved_inIEAUniProtKB-KW:KW-01771600115GO_REF:0000043UniProtGO_REF:0000043
Mmp3Ratcollagen catabolic process involved_inIBAMGI:101900 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Mmp3Ratextracellular matrix organization involved_inIBAFB:FBgn0033438 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Mmp3Ratfemale pregnancy  IEP 2325960 RGD 
Mmp3Ratinnate immune response involved_inIEAUniProtKB-KW:KW-03991600115GO_REF:0000043UniProtGO_REF:0000043
Mmp3Ratnegative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction involved_inISOMmp3 (Mus musculus)1624291 PMID:20969476RGDPMID:20969476
Mmp3Ratnegative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction involved_inIEAUniProtKB:P28862 and ensembl:ENSMUSP000000344971600115GO_REF:0000107EnsemblGO_REF:0000107
Mmp3Ratnegative regulation of reactive oxygen species metabolic process involved_inIEAUniProtKB:P08254 and ensembl:ENSP000002998551600115GO_REF:0000107EnsemblGO_REF:0000107
Mmp3Ratnegative regulation of reactive oxygen species metabolic process involved_inISOMMP3 (Homo sapiens)1624291 PMID:20969476RGDPMID:20969476
Mmp3Ratpositive regulation of cell migration  IMP 8694107 RGD 
Mmp3Ratpositive regulation of protein-containing complex assembly involved_inIEAUniProtKB:P08254 and ensembl:ENSP000002998551600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
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Original Reference(s)
Mmp3Ratcell body  IDA 2325874 RGD 
Mmp3Ratcytosol located_inISOMmp3 (Mus musculus)1624291 PMID:20969476RGDPMID:20969476
Mmp3Ratcytosol located_inIEAUniProtKB:P28862 and ensembl:ENSMUSP000000344971600115GO_REF:0000107EnsemblGO_REF:0000107
Mmp3Ratdendrite  IDA 2325874 RGD 
Mmp3Ratextracellular matrix located_inIEAInterPro:IPR001818 and InterPro:IPR0211581600115GO_REF:0000002InterProGO_REF:0000002
Mmp3Ratextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
Mmp3Ratextracellular space  IDA 2325876 RGD 
Mmp3Ratmitochondrion located_inISOMmp3 (Mus musculus)1624291 PMID:20969476RGDPMID:20969476
Mmp3Ratmitochondrion located_inIEAUniProtKB:P28862 and ensembl:ENSMUSP000000344971600115GO_REF:0000107EnsemblGO_REF:0000107
Mmp3Ratprotein-containing complex  IDA 2325938 RGD 
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Molecular Function
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Imported Annotations - KEGG (archival)

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Original Reference(s)
Mmp3Ratrheumatoid arthritis pathway  IEA 6907045 KEGGrno:05323

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#
Reference Title
Reference Citation
1. Changes in matrix metalloproteinases and their inhibitors in kidney transplant recipients. Ahmed AK, etal., Exp Clin Transplant. 2012 Aug;10(4):332-43.
2. Type 2 diabetes impairs tendon repair after injury in a rat model. Ahmed AS, etal., J Appl Physiol (1985). 2012 Dec 1;113(11):1784-91. doi: 10.1152/japplphysiol.00767.2012. Epub 2012 Oct 4.
3. Long-term administration of aspirin inhibits tumour formation and triggers anti-neoplastic molecular changes in a pre-clinical model of colon carcinogenesis. Bousserouel S, etal., Oncol Rep. 2010 Feb;23(2):511-7.
4. Novel phosphoinositide 3-kinase delta,gamma inhibitor: potent anti-inflammatory effects and joint protection in models of rheumatoid arthritis. Boyle DL, etal., J Pharmacol Exp Ther. 2014 Feb;348(2):271-80. doi: 10.1124/jpet.113.205955. Epub 2013 Nov 15.
5. Matrix metalloproteinase 1, 3 and 12 polymorphisms and esophageal adenocarcinoma risk and prognosis. Bradbury PA, etal., Carcinogenesis. 2009 May;30(5):793-8. doi: 10.1093/carcin/bgp065. Epub 2009 Mar 25.
6. Spatial and temporal pattern of expression of interstitial collagenase, stromelysin/transin, gelatinase A, and TIMP-1 during experimental gastric ulcer healing. Calabro A, etal., Digestion. 2004;70(2):127-38. Epub 2004 Sep 16.
7. Cyclooxygenase inhibition limits blood-brain barrier disruption following intracerebral injection of tumor necrosis factor-alpha in the rat. Candelario-Jalil E, etal., J Pharmacol Exp Ther. 2007 Nov;323(2):488-98. Epub 2007 Aug 17.
8. Autoantibody and biopsy grading are associated with expression of ICAM-1, MMP-3, and TRAIL in salivary gland mononuclear cells of Chinese patients with Sjogren's syndrome. Chen WS, etal., J Rheumatol. 2009 May;36(5):989-96. doi: 10.3899/jrheum.080733. Epub 2009 Mar 30.
9. Expression of matrix metalloproteinase-3 in the rat cervix during pregnancy and in response to prostaglandin E2. Chien EK, etal., Am J Obstet Gynecol. 2005 Jan;192(1):309-17.
10. Hyaluronan modulates accumulation of hypoxia-inducible factor-1 alpha, inducible nitric oxide synthase, and matrix metalloproteinase-3 in the synovium of rat adjuvant-induced arthritis model. Chou LW, etal., Arthritis Res Ther. 2011 Jun 16;13(3):R90. doi: 10.1186/ar3365.
11. Spinal matrix metalloproteinase 3 mediates inflammatory hyperalgesia via a tumor necrosis factor-dependent mechanism. Christianson CA, etal., Neuroscience. 2012 Jan 3;200:199-210. doi: 10.1016/j.neuroscience.2011.10.019. Epub 2011 Oct 20.
12. Matrix metalloproteinase-1 and matrix metalloproteinase-3 gene promoter polymorphisms are associated with mortality in haemodialysis patients. Cozzolino M, etal., Nephrol Dial Transplant. 2009 Jul;24(7):2207-12. doi: 10.1093/ndt/gfp061. Epub 2009 Feb 16.
13. Cholinoceptor modulation on nitric oxide regulates prostaglandin E(2) and metalloproteinase-3 production in experimentally induced inflammation of rat dental pulp. De Couto Pita A, etal., J Endod. 2009 Apr;35(4):529-36.
14. Regulation of matrix metalloproteinase expression by dynamic tensile strain in rat fibrochondrocytes. Deschner J, etal., Osteoarthritis Cartilage. 2006 Mar;14(3):264-72. Epub 2005 Nov 14.
15. Modulation of extracellular matrix components by metalloproteinases and their tissue inhibitors during degeneration and regeneration of rat sural nerve. Gantus MA, etal., Brain Res. 2006 Nov 29;1122(1):36-46. Epub 2006 Oct 6.
16. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
17. A multigenic approach to predict breast cancer risk. Gerger A, etal., Breast Cancer Res Treat. 2007 Aug;104(2):159-64. Epub 2006 Oct 21.
18. Matrix metalloproteinase-1 and matrix metalloproteinase-3 gene promoter polymorphisms are associated with carotid artery stenosis. Ghilardi G, etal., Stroke. 2002 Oct;33(10):2408-12.
19. Prevention of alveolar destruction and airspace enlargement in a mouse model of pulmonary lymphangioleiomyomatosis (LAM). Goncharova EA, etal., Sci Transl Med. 2012 Oct 3;4(154):154ra134. doi: 10.1126/scitranslmed.3003840.
20. Gene expression profiling of skin and draining lymph nodes of rats affected with cutaneous contact hypersensitivity. Hartmann B, etal., Inflamm Res. 2006 Aug;55(8):322-34.
1 to 20 of 95 rows
PMID:1963430   PMID:2431284   PMID:2841336   PMID:9573338   PMID:11869290   PMID:12867428   PMID:15044600   PMID:15504731   PMID:15698619   PMID:15863497   PMID:16150423   PMID:17456343  
PMID:17539323   PMID:18072934   PMID:18172013   PMID:18404723   PMID:18754875   PMID:18765931   PMID:18832569   PMID:19022250   PMID:19389428   PMID:19397203   PMID:19463894   PMID:20162718  
PMID:20548288   PMID:20969476   PMID:21055467   PMID:21330369   PMID:22615070   PMID:22961837   PMID:23086831   PMID:23277113   PMID:23845380   PMID:24006456   PMID:25062286   PMID:25536219  
PMID:26047379   PMID:26075533   PMID:26087281   PMID:27339256   PMID:27425890   PMID:28265573   PMID:28753453   PMID:29197741   PMID:29462373   PMID:29523370   PMID:29928874   PMID:31493243  
PMID:33130223   PMID:33655326   PMID:34656826   PMID:36509234   PMID:38454645  



Mmp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8812,925,267 - 12,938,828 (+)NCBIGRCr8
mRatBN7.284,640,397 - 4,653,963 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl84,640,416 - 4,653,961 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx88,600,140 - 8,613,640 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.086,897,910 - 6,911,412 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.084,900,079 - 4,913,622 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.085,676,608 - 5,698,579 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl85,676,665 - 5,698,579 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.085,680,382 - 5,701,427 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.484,315,601 - 4,329,146 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.184,315,600 - 4,329,146 (+)NCBI
Celera86,200,234 - 6,213,783 (+)NCBICelera
Cytogenetic Map8q11NCBI
MMP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811102,835,801 - 102,843,609 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11102,835,801 - 102,843,609 (-)EnsemblGRCh38hg38GRCh38
GRCh3711102,706,532 - 102,714,340 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611102,211,738 - 102,219,552 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411102,211,742 - 102,219,550NCBI
Celera1199,868,135 - 99,875,949 (-)NCBICelera
Cytogenetic Map11q22.2NCBI
HuRef1198,634,450 - 98,642,264 (-)NCBIHuRef
CHM1_111102,589,497 - 102,597,317 (-)NCBICHM1_1
T2T-CHM13v2.011102,839,570 - 102,847,378 (-)NCBIT2T-CHM13v2.0
Mmp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3997,445,845 - 7,455,975 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl97,445,822 - 7,455,975 (+)EnsemblGRCm39 Ensembl
GRCm3897,445,822 - 7,455,975 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl97,445,822 - 7,455,975 (+)EnsemblGRCm38mm10GRCm38
MGSCv3797,445,822 - 7,455,975 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3697,445,822 - 7,455,975 (+)NCBIMGSCv36mm8
Celera94,846,374 - 4,856,527 (+)NCBICelera
Cytogenetic Map9A1NCBI
cM Map92.46NCBI
MMP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29103,629,536 - 103,637,408 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111104,717,742 - 104,725,633 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01197,776,729 - 97,784,549 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111101,267,561 - 101,275,432 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11101,267,566 - 101,275,354 (-)Ensemblpanpan1.1panPan2
MMP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1528,949,631 - 28,957,915 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl528,949,631 - 28,958,222 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha528,898,123 - 28,906,399 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0529,000,797 - 29,009,079 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl529,000,797 - 29,009,386 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1529,035,847 - 29,044,131 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0528,915,267 - 28,923,546 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0529,090,249 - 29,098,533 (+)NCBIUU_Cfam_GSD_1.0
MMP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1194,216,156 - 94,224,437 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl194,216,173 - 94,224,264 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604331,654,560 - 31,662,871 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mmp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462487839,358 - 47,075 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462487839,282 - 47,386 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Mmp3
19 total Variants

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:26
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000012310
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 8 4 61 47 43 21 14 21 6 101 39 41 26 44 22



Ensembl Acc Id: ENSRNOT00000012310   ⟹   ENSRNOP00000012310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl85,676,665 - 5,698,237 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091704   ⟹   ENSRNOP00000075241
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl84,640,416 - 4,653,961 (+)Ensembl
Rnor_6.0 Ensembl85,686,298 - 5,698,579 (+)Ensembl
RefSeq Acc Id: NM_133523   ⟹   NP_598207
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8812,925,281 - 12,938,826 (+)NCBI
mRatBN7.284,640,416 - 4,653,961 (+)NCBI
Rnor_6.085,676,608 - 5,698,579 (+)NCBI
Rnor_5.085,680,382 - 5,701,427 (+)NCBI
RGSC_v3.484,315,601 - 4,329,146 (+)RGD
Celera86,200,234 - 6,213,783 (+)RGD
Sequence:
RefSeq Acc Id: XM_039080743   ⟹   XP_038936671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8812,925,267 - 12,938,828 (+)NCBI
mRatBN7.284,640,397 - 4,653,963 (+)NCBI
Protein RefSeqs NP_598207 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936671 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA26448 (Get FASTA)   NCBI Sequence Viewer  
  EDL78534 (Get FASTA)   NCBI Sequence Viewer  
  EDL78535 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000075241.2
GenBank Protein P03957 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_598207   ⟸   NM_133523
- Peptide Label: preproprotein
- UniProtKB: A6JN31 (UniProtKB/TrEMBL),   A0A0G2KA34 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012310   ⟸   ENSRNOT00000012310
Ensembl Acc Id: ENSRNOP00000075241   ⟸   ENSRNOT00000091704
RefSeq Acc Id: XP_038936671   ⟸   XM_039080743
- Peptide Label: isoform X1
- UniProtKB: A6JN31 (UniProtKB/TrEMBL),   A0A0G2KA34 (UniProtKB/TrEMBL)
Peptidase metallopeptidase

Name Modeler Protein Id AA Range Protein Structure
AF-P03957-F1-model_v2 AlphaFold P03957 1-475 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13695737
Promoter ID:EPDNEW_R6257
Type:single initiation site
Name:Mmp3_1
Description:matrix metallopeptidase 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.085,676,607 - 5,676,667EPDNEW


1 to 40 of 41 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-31789 BioCyc
Ensembl Genes ENSRNOG00000032626 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000091704.2 UniProtKB/TrEMBL
Gene3D-CATH 2.110.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.390.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Hemopexin-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hemopexin-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hemopexin-like_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hemopexin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  M10A_MMP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MetalloPept_cat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_M10_metallopeptidase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_M10A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_M10A_Zn_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_Metallo UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidoglycan-bd-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PGBD-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:171045 UniProtKB/TrEMBL
NCBI Gene 171045 ENTREZGENE
PANTHER MATRIX METALLOPROTEINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STROMELYSIN-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Hemopexin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_M10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PG_binding_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB MMP3 RGD
PhenoGen Mmp3 PhenoGen
PIRSF Peptidase_M10A_matrix UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS MATRIXIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CYSTEINE_SWITCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HEMOPEXIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HEMOPEXIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_PROTEASE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000032626 RatGTEx
SMART SM00120 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnMc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Metalloproteases ('zincins'), catalytic domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47090 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50923 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2KA34 ENTREZGENE, UniProtKB/TrEMBL
  A6JN31 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 41 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Mmp3  matrix metallopeptidase 3    matrix metalloproteinase 3  Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Mmp3  matrix metalloproteinase 3      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_process may have an important role during early tooth development 729121