Cacng1 (calcium voltage-gated channel auxiliary subunit gamma 1) - Rat Genome Database

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Gene: Cacng1 (calcium voltage-gated channel auxiliary subunit gamma 1) Rattus norvegicus
Analyze
Symbol: Cacng1
Name: calcium voltage-gated channel auxiliary subunit gamma 1
RGD ID: 2249
Description: Enables calcium channel regulator activity. Involved in regulation of calcium ion transmembrane transport via high voltage-gated calcium channel. Part of L-type voltage-gated calcium channel complex. Human ortholog(s) of this gene implicated in malignant hyperthermia. Orthologous to human CACNG1 (calcium voltage-gated channel auxiliary subunit gamma 1); PARTICIPATES IN arrhythmogenic right ventricular cardiomyopathy pathway; dilated cardiomyopathy pathway; hypertrophic cardiomyopathy pathway; INTERACTS WITH (S)-nicotine; 2,3,7,8-tetrachlorodibenzodioxine; acetamiprid.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CACNG; calcium channel, voltage-dependent, gamma subunit 1; dihydropyridine-sensitive L-type, skeletal muscle calcium channel subunit gamma; voltage-dependent calcium channel gamma-1 subunit
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81093,152,558 - 93,165,246 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1093,152,248 - 93,165,417 (-)EnsemblGRCr8
mRatBN7.21092,652,924 - 92,665,612 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1092,652,614 - 92,665,783 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1097,711,022 - 97,723,710 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01097,174,042 - 97,186,732 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01092,575,656 - 92,588,362 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01095,921,479 - 95,934,170 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1095,921,174 - 95,934,345 (-)Ensemblrn6Rnor6.0
Rnor_5.01095,655,624 - 95,668,315 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41097,105,707 - 97,118,400 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1091,318,721 - 91,331,399 (-)NCBICelera
RGSC_v3.11097,120,076 - 97,132,770 (-)NCBI
Cytogenetic Map10q32.1NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Calcium channel gamma subunits provide insights into the evolution of this gene family. Chu PJ, etal., Gene 2001 Dec 12;280(1-2):37-48.
2. Identification and functional characterization of a calcium channel gamma subunit. Eberst R, etal., Pflugers Arch 1997 Mar;433(5):633-7.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Genetic mapping of the beta 1- and gamma-subunits of the human skeletal muscle L-type voltage-dependent calcium channel on chromosome 17q and exclusion as candidate genes for malignant hyperthermia susceptibility. Iles DE, etal., Hum Mol Genet 1993 Jul;2(7):863-8.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:10799530   PMID:15504904  


Genomics

Comparative Map Data
Cacng1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81093,152,558 - 93,165,246 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1093,152,248 - 93,165,417 (-)EnsemblGRCr8
mRatBN7.21092,652,924 - 92,665,612 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1092,652,614 - 92,665,783 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1097,711,022 - 97,723,710 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01097,174,042 - 97,186,732 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01092,575,656 - 92,588,362 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01095,921,479 - 95,934,170 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1095,921,174 - 95,934,345 (-)Ensemblrn6Rnor6.0
Rnor_5.01095,655,624 - 95,668,315 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41097,105,707 - 97,118,400 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1091,318,721 - 91,331,399 (-)NCBICelera
RGSC_v3.11097,120,076 - 97,132,770 (-)NCBI
Cytogenetic Map10q32.1NCBI
CACNG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381767,044,554 - 67,056,797 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1767,044,554 - 67,056,797 (+)Ensemblhg38GRCh38
GRCh371765,040,670 - 65,052,913 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361762,471,168 - 62,483,375 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341762,471,167 - 62,483,371NCBI
Celera1761,613,382 - 61,625,583 (+)NCBICelera
Cytogenetic Map17q24.2NCBI
HuRef1760,429,261 - 60,441,513 (+)NCBIHuRef
CHM1_11765,104,606 - 65,116,856 (+)NCBICHM1_1
T2T-CHM13v2.01767,920,364 - 67,932,598 (+)NCBIT2T-CHM13v2.0
Cacng1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911107,594,044 - 107,607,302 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11107,594,044 - 107,607,348 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3811107,703,218 - 107,716,476 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11107,703,218 - 107,716,522 (-)Ensemblmm10GRCm38
MGSCv3711107,564,532 - 107,577,790 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3611107,519,308 - 107,532,566 (-)NCBIMGSCv36mm8
Celera11119,438,411 - 119,451,651 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1170.29NCBI
Cacng1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554786,294,974 - 6,305,669 (+)Ensembl
ChiLan1.0NW_0049554786,295,046 - 6,305,625 (+)NCBIChiLan1.0ChiLan1.0
CACNG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21983,071,599 - 83,090,853 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11787,891,441 - 87,914,656 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01760,978,895 - 60,993,621 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11766,187,565 - 66,199,795 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1766,187,565 - 66,199,789 (+)EnsemblpanPan2panpan1.1
CACNG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1913,425,898 - 13,438,275 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl913,426,105 - 13,438,614 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha914,320,527 - 14,332,878 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0915,088,975 - 15,101,463 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl915,089,182 - 15,101,509 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1914,036,391 - 14,048,856 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0913,485,243 - 13,497,697 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0913,486,979 - 13,499,379 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cacng1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560213,154,750 - 13,165,862 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365416,028,669 - 6,040,034 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365416,028,775 - 6,039,882 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1213,463,058 - 13,481,645 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11213,462,589 - 13,481,651 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21213,833,206 - 13,844,295 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11654,383,328 - 54,397,331 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1654,383,204 - 54,396,610 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607725,422,067 - 25,435,899 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacng1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248701,333,843 - 1,344,483 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248701,333,907 - 1,344,386 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cacng1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1971,414,805 - 71,427,755 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cacng1
92 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:49
Interacting mature miRNAs:55
Transcripts:ENSRNOT00000004349
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105107189796071897Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102702353598502431Rat
8657410Bp374Blood pressure QTL 374heart left ventricle size trait (VT:0002753)heart left ventricle end-diastolic diameter (CMO:0000982)1067476608107713808Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063719161107713808Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1058073360103073360Rat
12903252Cm113Cardiac mass QTL 1130.047heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)109090424595604677Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105429633699451733Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1064939013107713808Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076951790107713808Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105046480295464802Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)1079272424102982300Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1073599825107713808Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104552916496099749Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
10450495Bp383Blood pressure QTL 3830.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107674313395464802Rat
12903269Am15Aortic mass QTL 150.042aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105086028895860288Rat
2313856Bp342Blood pressure QTL 3424.40.0001life span trait (VT:0005372)age at time of death (CMO:0001193)108780775896620484Rat
12903266Cm114Cardiac mass QTL 1140.02heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1066817119107713808Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107395035396620293Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062556066107556066Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
12880372Am12Aortic mass QTL 120.003aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062556066107556066Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087807758107713808Rat
12880375Kidm66Kidney mass QTL 660.009kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106724133498502431Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
12880370Cm105Cardiac mass QTL 1050.008heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
12880371Cm106Cardiac mass QTL 1060.007heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)109112727095604677Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106184349698710773Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1091127270107556066Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)107369533997272278Rat
11565453Kidm58Kidney mass QTL 580.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1065390777107713808Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1081012077101828297Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)9090424595604677Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)9090424595604677Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)109090424595604677Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107304965694495280Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)109090424595604677Rat
2306792Ean4Experimental allergic neuritis QTL 44nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)104949549294495492Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)109090424595604677Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068920187107713808Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)1065307813107713808Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1089039175107713808Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1061843496106843496Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)108890050196620484Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070698731107713808Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)102758722696099902Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105530797293608131Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)1061843496100198886Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104994371094943710Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1581559Eae18Experimental allergic encephalomyelitis QTL 180.00002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1066108888107555881Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1061843496100198886Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
12880055Am11Aortic mass QTL 110.004aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)108450348796432422Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107674313395604677Rat
2301398Kidm38Kidney mass QTL 380.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)108450348796432422Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105060467795604677Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1076128947107713808Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107395035396620293Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)1061997479106997479Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091727883107713808Rat
2301405Cm69Cardiac mass QTL 690.031heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102702353599451848Rat

Markers in Region
RH132819  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21092,652,663 - 92,652,855 (+)MAPPERmRatBN7.2
Rnor_6.01095,921,219 - 95,921,410NCBIRnor6.0
Rnor_5.01095,655,364 - 95,655,555UniSTSRnor5.0
RGSC_v3.41097,105,447 - 97,105,638UniSTSRGSC3.4
Celera1091,318,461 - 91,318,652UniSTS
Cytogenetic Map10q32.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
4 11 12 82 38 46 17 20 17 6 104 56 9 62 19 44 29 4 4

Sequence


Ensembl Acc Id: ENSRNOT00000004349   ⟹   ENSRNOP00000004349
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1093,152,248 - 93,165,417 (-)Ensembl
mRatBN7.2 Ensembl1092,652,614 - 92,665,783 (-)Ensembl
Rnor_6.0 Ensembl1095,921,174 - 95,934,345 (-)Ensembl
RefSeq Acc Id: NM_019255   ⟹   NP_062128
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81093,152,558 - 93,165,246 (-)NCBI
mRatBN7.21092,652,924 - 92,665,612 (-)NCBI
Rnor_6.01095,921,479 - 95,934,170 (-)NCBI
Rnor_5.01095,655,624 - 95,668,315 (-)NCBI
RGSC_v3.41097,105,707 - 97,118,400 (-)RGD
Celera1091,318,721 - 91,331,399 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_062128 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA70602 (Get FASTA)   NCBI Sequence Viewer  
  EDM06440 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000004349
GenBank Protein P97707 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_062128   ⟸   NM_019255
- UniProtKB: P97707 (UniProtKB/Swiss-Prot),   A6HK85 (UniProtKB/TrEMBL),   G3V6E5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000004349   ⟸   ENSRNOT00000004349

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97707-F1-model_v2 AlphaFold P97707 1-223 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697852
Promoter ID:EPDNEW_R8377
Type:multiple initiation site
Name:Cacng1_1
Description:calcium voltage-gated channel auxiliary subunit gamma 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01095,934,235 - 95,934,295EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2249 AgrOrtholog
BioCyc Gene G2FUF-22891 BioCyc
Ensembl Genes ENSRNOG00000003245 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000004349 ENTREZGENE
Gene3D-CATH 1.20.140.150 UniProtKB/Swiss-Prot
InterPro PMP22/EMP/MP20/Claudin UniProtKB/Swiss-Prot
  VDCC_g1su UniProtKB/Swiss-Prot
  VDCC_gsu UniProtKB/Swiss-Prot
KEGG Report rno:29658 UniProtKB/Swiss-Prot
NCBI Gene Cacng1 ENTREZGENE
PANTHER VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA-1 SUBUNIT UniProtKB/Swiss-Prot
  VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA-1 SUBUNIT-RELATED UniProtKB/Swiss-Prot
Pfam Claudin_2 UniProtKB/Swiss-Prot
PhenoGen Cacng1 PhenoGen
PRINTS VDCCGAMMA UniProtKB/Swiss-Prot
  VDCCGAMMA1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000003245 RatGTEx
TIGR TC233079
UniProt A6HK85 ENTREZGENE, UniProtKB/TrEMBL
  CCG1_RAT UniProtKB/Swiss-Prot
  G3V6E5 ENTREZGENE, UniProtKB/TrEMBL
  P97707 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-11 Cacng1  calcium voltage-gated channel auxiliary subunit gamma 1  Cacng1  calcium channel, voltage-dependent, gamma subunit 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Cacng1  calcium channel, voltage-dependent, gamma subunit 1       Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in skeletal muscle and cardiac tissue 69791
gene_process involved in shifting the inactivation curve to negative potentials and accelerated current inactivation of calcium channels 69791
gene_protein 223 amino acid protein 69791