| 3276 | Pctp | phosphatidylcholine transfer protein | 10 | 78400328 | 78420774 | Rat |
| 1560541 | Tmem100 | transmembrane protein 100 | 10 | 78446217 | 78452072 | Rat |
| 1592079 | Mmd | monocyte to macrophage differentiation-associated | 10 | 78664115 | 78692402 | Rat |
| 1582828 | LOC690286 | similar to hepatic leukemia factor | 10 | 78749958 | 78818378 | Rat |
| 1307903 | Stxbp4 | syntaxin binding protein 4 | 10 | 78887817 | 79039618 | Rat |
| 1309822 | Cox11 | cytochrome c oxidase assembly homolog 11 (yeast) | 10 | 79039704 | 79046277 | Rat |
| 1562626 | Tom1l1 | target of myb1 (chicken)-like 1 | 10 | 79045532 | 79090038 | Rat |
| 2323022 | LOC100363423 | rCG35357-like | 10 | 79090008 | 79090853 | Rat |
| 1564550 | RGD1564550 | similar to 60S ribosomal protein L35 | 10 | 79224592 | 79284613 | Rat |
| 1566089 | LOC303448 | similar to glyceraldehyde-3-phosphate dehydrogenase | 10 | 79569651 | 79578095 | Rat |
| 2323110 | LOC100359935 | ribosomal protein L37a-like | 10 | 79590919 | 79684094 | Rat |
| 2322976 | LOC100363469 | ribosomal protein S24-like | 10 | 79887242 | 79887643 | Rat |
| 1359248 | Kif2b | kinesin family member 2B | 10 | 79994602 | 79996812 | Rat |
| 1594586 | LOC287625 | similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) | 10 | 80890039 | 80891107 | Rat |
| 2322930 | Ca10 | carbonic anhydrase 10 | 10 | 81756486 | 82238335 | Rat |
| 2322883 | LOC100360062 | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F-like | 10 | 82310101 | 82378645 | Rat |
| 2323797 | LOC100359496 | thymosin, beta 10-like | 10 | 82399219 | 82399353 | Rat |
| 1309957 | Utp18 | UTP18, small subunit (SSU) processome component, homolog (yeast) | 10 | 82515696 | 82542665 | Rat |
| 619877 | Nme2 | NME/NM23 nucleoside diphosphate kinase 2 | 10 | 82582766 | 82588269 | Rat |
| 70497 | Nme1 | NME/NM23 nucleoside diphosphate kinase 1 | 10 | 82591705 | 82601075 | Rat |
| 1311289 | Spag9 | sperm associated antigen 9 | 10 | 82649289 | 82762795 | Rat |
| 621126 | Tob1 | transducer of ErbB-2.1 | 10 | 82852405 | 82854443 | Rat |
| 1305361 | Wfikkn2 | WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 | 10 | 82875905 | 82880816 | Rat |
| 1307981 | Luc7l3 | LUC7-like 3 (S. cerevisiae) | 10 | 82930086 | 82966058 | Rat |
| 1594678 | Ankrd40 | ankyrin repeat domain 40 | 10 | 82977241 | 82985181 | Rat |
| 71101 | Abcc3 | ATP-binding cassette, subfamily C (CFTR/MRP), member 3 | 10 | 82986552 | 83030799 | Rat |
| 2322742 | LOC100360107 | hypothetical protein LOC100360107 | 10 | 83030829 | 83044797 | Rat |
| 68942 | Cacna1g | calcium channel, voltage-dependent, T type, alpha 1G subunit | 10 | 83043636 | 83112886 | Rat |
| 735087 | Spata20 | spermatogenesis associated 20 | 10 | 83117661 | 83124501 | Rat |
| 1306416 | Epn3 | epsin 3 | 10 | 83129023 | 83137401 | Rat |
| 1359123 | Mycbpap | Mycbp associated protein | 10 | 83140371 | 83143078 | Rat |
| 1562656 | Acsf2 | acyl-CoA synthetase family member 2 | 10 | 83194326 | 83238284 | Rat |
| 2336 | Chad | chondroadherin | 10 | 83201982 | 83205753 | Rat |
| 1305092 | Lrrc59 | leucine rich repeat containing 59 | 10 | 83264264 | 83278807 | Rat |
| 1309067 | Eme1 | essential meiotic endonuclease 1 homolog 1 (S. pombe) | 10 | 83279086 | 83285091 | Rat |
| 1309090 | Mrpl27 | mitochondrial ribosomal protein L27 | 10 | 83287375 | 83293135 | Rat |
| 619765 | Xylt2 | xylosyltransferase II | 10 | 83297806 | 83311288 | Rat |
| 2324790 | LOC100363099 | mCG13644-like | 10 | 83452805 | 83456642 | Rat |
| 1593405 | Tmem92 | transmembrane protein 92 | 10 | 83462754 | 83474811 | Rat |
| 2323428 | LOC100363212 | mCG13644-like | 10 | 83490491 | 83493152 | Rat |
| 2323382 | LOC100363258 | mCG13644-like | 10 | 83509512 | 83513344 | Rat |
| 1563563 | RGD1563563 | similar to peptidylprolyl isomerase D | 10 | 83514924 | 83517176 | Rat |
| 61817 | Col1a1 | collagen, type I, alpha 1 | 10 | 83622438 | 83639368 | Rat |
| 1308062 | Sgca | sarcoglycan, alpha (dystrophin-associated glycoprotein) | 10 | 83647336 | 83660800 | Rat |
| 1585185 | Hils1 | histone linker H1 domain, spermatid-specific 1 | 10 | 83652123 | 83652919 | Rat |
| 632281 | Ppp1r9b | protein phosphatase 1, regulatory subunit 9B | 10 | 83674797 | 83690639 | Rat |
| 1306138 | Samd14 | sterile alpha motif domain containing 14 | 10 | 83695829 | 83710239 | Rat |
| 69428 | Pdk2 | pyruvate dehydrogenase kinase, isozyme 2 | 10 | 83710448 | 83724973 | Rat |
| 1310333 | Itga3 | integrin, alpha 3 | 10 | 83728710 | 83759576 | Rat |
| 1304875 | Dlx3 | distal-less homeobox 3 | 10 | 83802169 | 83807565 | Rat |
| 1308744 | Dlx4 | distal-less homeobox 4 | 10 | 83822815 | 83828210 | Rat |
| 2323196 | LOC100363347 | hypothetical LOC100363347 | 10 | 83852010 | 83886697 | Rat |
| 628842 | Tac4 | tachykinin 4 (hemokinin) | 10 | 83946235 | 83954475 | Rat |
| 727966 | Kat7 | K (lysine) acetyltransferase 7 | 10 | 83960245 | 83995124 | Rat |
| 1565395 | RGD1565395 | similar to stathmin 1/oncoprotein 18) | 10 | 84014895 | 84015350 | Rat |
| 1561062 | Fam117a | family with sequence similarity 117, member A | 10 | 84022262 | 84067048 | Rat |
| 727783 | Slc35b1 | solute carrier family 35, member B1 | 10 | 84069903 | 84076976 | Rat |
| 1311613 | Spop | speckle-type POZ protein | 10 | 84099990 | 84185130 | Rat |
| 620693 | Nxph3 | neurexophilin 3 | 10 | 84202769 | 84206435 | Rat |
| 3177 | Ngfr | nerve growth factor receptor | 10 | 84262804 | 84281006 | Rat |
| 1566329 | Zfp652 | zinc finger protein 652 | 10 | 84452884 | 84468055 | Rat |
| 1591014 | LOC690817 | hypothetical protein LOC690817 | 10 | 84501834 | 84535957 | Rat |
| 1306182 | Phospho1 | phosphatase, orphan 1 | 10 | 84535187 | 84542722 | Rat |
| 1311794 | Abi3 | ABI family, member 3 | 10 | 84542949 | 84554040 | Rat |
| 1591007 | Gngt2 | guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 | 10 | 84554318 | 84557459 | Rat |
| 708580 | Igf2bp1 | insulin-like growth factor 2 mRNA binding protein 1 | 10 | 84671084 | 84714648 | Rat |
| 2709 | Gip | gastric inhibitory polypeptide | 10 | 84732705 | 84740801 | Rat |
| 1310144 | Snf8 | SNF8, ESCRT-II complex subunit | 10 | 84749033 | 84761230 | Rat |
| 2319914 | LOC100361553 | hypothetical LOC100361553 | 10 | 84751409 | 84751771 | Rat |
| 1583984 | LOC690189 | similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) | 10 | 84753178 | 84754231 | Rat |
| 1308347 | Ube2z | ubiquitin-conjugating enzyme E2Z | 10 | 84762405 | 84781526 | Rat |
| 61933 | Atp5g1 | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) | 10 | 84788650 | 84791230 | Rat |
| 1559974 | Calcoco2 | calcium binding and coiled-coil domain 2 | 10 | 84820832 | 84847065 | Rat |
| 1311922 | Ttll6 | tubulin tyrosine ligase-like family, member 6 | 10 | 84857020 | 84887025 | Rat |
| 1309113 | Hoxb13 | homeo box B13 | 10 | 84925520 | 84927793 | Rat |
| 1590952 | LOC690883 | hypothetical protein LOC690883 | 10 | 84982870 | 85000356 | Rat |
| 1306158 | Hoxb9 | homeo box B9 | 10 | 85002254 | 85005760 | Rat |
| 1586211 | Hoxb8 | homeo box B8 | 10 | 85013711 | 85015462 | Rat |
| 1559918 | Hoxb7 | homeo box B7 | 10 | 85017440 | 85020858 | Rat |
| 1562142 | Hoxb6 | homeo box B6 | 10 | 85030558 | 85033604 | Rat |
| 1562292 | Hoxb5 | homeo box B5 | 10 | 85035516 | 85037724 | Rat |
| 1560113 | Hoxb4 | homeo box B4 | 10 | 85050695 | 85053277 | Rat |
| 1310780 | Hoxb3 | homeo box B3 | 10 | 85076528 | 85079216 | Rat |
| 2319509 | Hoxb2 | homeobox B2 | 10 | 85085425 | 85087617 | Rat |
| 1310298 | Hoxb1 | homeo box B1 | 10 | 85098903 | 85100308 | Rat |
| 708436 | Skap1 | src kinase associated phosphoprotein 1 | 10 | 85193804 | 85507161 | Rat |
| 1307319 | Snx11 | sorting nexin 11 | 10 | 85516530 | 85526895 | Rat |
| 1310714 | Cbx1 | chromobox homolog 1 | 10 | 85544537 | 85564903 | Rat |
| 1311972 | Nfe2l1 | nuclear factor, erythroid derived 2,-like 1 | 10 | 85570238 | 85577636 | Rat |
| 2318777 | LOC100362105 | ribosomal protein S11-like | 10 | 85587653 | 85603950 | Rat |
| 1306948 | Copz2 | coatomer protein complex, subunit zeta 2 | 10 | 85607750 | 85622492 | Rat |
| 2318731 | LOC100362152 | hypothetical protein LOC100362152 | 10 | 85615565 | 85725674 | Rat |
| 1592078 | Sp2 | Sp2 transcription factor | 10 | 85676978 | 85706042 | Rat |
| 1306768 | Sp6 | Sp6 transcription factor | 10 | 85741421 | 85745602 | Rat |
| 1307741 | Scrn2 | secernin 2 | 10 | 85752609 | 85756579 | Rat |
| 1303311 | Lrrc46 | leucine rich repeat containing 46 | 10 | 85757231 | 85761727 | Rat |
| 1588626 | Mrpl10 | mitochondrial ribosomal protein L10 | 10 | 85761934 | 85770350 | Rat |
| 1309141 | Osbpl7 | oxysterol binding protein-like 7 | 10 | 85771941 | 85789490 | Rat |
| 1308264 | Tbx21 | T-box 21 | 10 | 85817743 | 85834178 | Rat |
| 631328 | Tbkbp1 | TBK1 binding protein 1 | 10 | 85855910 | 85869707 | Rat |
| 2909 | Kpnb1 | karyopherin (importin) beta 1 | 10 | 85882382 | 85910805 | Rat |
| 619962 | Npepps | aminopeptidase puromycin sensitive | 10 | 85927819 | 86011826 | Rat |
| 1304913 | Mrpl45 | mitochondrial ribosomal protein L45 | 10 | 86046541 | 86058364 | Rat |
| 1560033 | Gpr179 | G protein-coupled receptor 179 | 10 | 86062615 | 86078335 | Rat |
| 1583721 | LOC501718 | similar to dual specificity phosphatase 26 | 10 | 86083862 | 86084630 | Rat |
| 1307720 | Socs7 | suppressor of cytokine signaling 7 | 10 | 86090339 | 86134313 | Rat |
| 1587450 | LOC691136 | hypothetical protein LOC691136 | 10 | 86156779 | 86170453 | Rat |
| 1309742 | Arhgap23 | Rho GTPase activating protein 23 | 10 | 86181797 | 86247845 | Rat |
| 708439 | Srcin1 | SRC kinase signaling inhibitor 1 | 10 | 86263255 | 86320681 | Rat |
| 1587321 | LOC363673 | similar to ribosomal protein L21 | 10 | 86354774 | 86355378 | Rat |
| 1587434 | LOC691153 | hypothetical protein LOC691153 | 10 | 86378059 | 86379579 | Rat |
| 1306689 | Mllt6 | myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 | 10 | 86413002 | 86431124 | Rat |
| 1559720 | Cisd3 | CDGSH iron sulfur domain 3 | 10 | 86434901 | 86437932 | Rat |
| 1305097 | Pcgf2 | polycomb group ring finger 2 | 10 | 86439109 | 86443193 | Rat |
| 61875 | Psmb3 | proteasome (prosome, macropain) subunit, beta type 3 | 10 | 86452533 | 86459616 | Rat |
| 621710 | Pip4k2b | phosphatidylinositol-5-phosphate 4-kinase, type II, beta | 10 | 86464211 | 86490407 | Rat |
| 1305258 | Cwc25 | CWC25 spliceosome-associated protein homolog (S. cerevisiae) | 10 | 86491167 | 86515834 | Rat |
| 1587402 | LOC691189 | hypothetical protein LOC691189 | 10 | 86519984 | 86523409 | Rat |
| 62067 | Rpl23 | ribosomal protein L23 | 10 | 86527589 | 86531549 | Rat |
| 68408 | Lasp1 | LIM and SH3 protein 1 | 10 | 86552612 | 86593328 | Rat |
| 2318356 | LOC100362329 | hypothetical LOC100362329 | 10 | 86594074 | 86597163 | Rat |
| 1559709 | Fbxo47 | F-box protein 47 | 10 | 86607280 | 86637847 | Rat |
| 1307496 | Plxdc1 | plexin domain containing 1 | 10 | 86688500 | 86748229 | Rat |
| 1563128 | Arl5c | ADP-ribosylation factor-like 5C | 10 | 86751321 | 86758083 | Rat |
| 68382 | Cacnb1 | calcium channel, voltage-dependent, beta 1 subunit | 10 | 86764283 | 86784791 | Rat |
| 621183 | Rpl19 | ribosomal protein L19 | 10 | 86788838 | 86792126 | Rat |
| 1305548 | Stac2 | SH3 and cysteine rich domain 2 | 10 | 86799903 | 86816382 | Rat |
| 621722 | Fbxl20 | F-box and leucine-rich repeat protein 20 | 10 | 86863545 | 86912521 | Rat |
| 1559552 | Med1 | mediator complex subunit 1 | 10 | 86917525 | 86959080 | Rat |
| 621111 | Cdk12 | cyclin-dependent kinase 12 | 10 | 86972428 | 87027794 | Rat |
| 727791 | LOC257650 | hippyragranin | 10 | 87040473 | 87054021 | Rat |
| 1586261 | LOC691247 | hypothetical protein LOC691247 | 10 | 87068389 | 87070398 | Rat |
| 3166 | Neurod2 | neuronal differentiation 2 | 10 | 87097850 | 87111300 | Rat |
| 621859 | Ppp1r1b | protein phosphatase 1, regulatory (inhibitor) subunit 1B | 10 | 87121889 | 87131587 | Rat |
| 1549768 | Stard3 | StAR-related lipid transfer (START) domain containing 3 | 10 | 87132237 | 87160076 | Rat |
| 2561 | Erbb2 | v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) | 10 | 87219157 | 87242919 | Rat |
| 1306682 | Mien1 | migration and invasion enhancer 1 | 10 | 87243039 | 87244331 | Rat |
| 619759 | Grb7 | growth factor receptor bound protein 7 | 10 | 87252571 | 87261619 | Rat |
| 61427 | Cia16 | Collagen induced arthritis QTL 16 | 3.2 | | Joint/bone inflammation | type II collagen induced | 10 | 6380753 | 100633982 | Rat |
| 2303118 | Mamtr7 | Mammary tumor resistance QTL 7 | | .003 | Mammary tumor resistance | | 10 | 9762188 | 108776963 | Rat |
| 2301967 | Cm73 | Cardiac mass QTL 73 | 4.55 | | Cardiac mass | left ventricle | 10 | 14721135 | 92841289 | Rat |
| 2316949 | Gluco60 | Glucose level QTL 60 | 3.7 | | Glucose level | postprandial | 10 | 14721135 | 154166503 | Rat |
| 631268 | Cia21 | Collagen induced arthritis QTL 21 | 3.1 | | Joint/bone inflammation | arthritis severity | 10 | 14721135 | 159833317 | Rat |
| 1554317 | Bmd4 | Bone mineral density QTL 4 | 9.4 | .0001 | Bone mineral density | spine volumetric BMD by pQCT | 10 | 20233281 | 104013574 | Rat |
| 70223 | Bp57 | Blood pressure QTL 57 | 5 | | Blood pressure | indirect systolic | 10 | 21607719 | 84443989 | Rat |
| 70188 | BpQTLcluster1 | Blood pressure QTL cluster 1 | 4.82 | | Blood pressure | | 1 | 21607719 | 91471072 | Rat |
| 70198 | BpQTLcluster9 | Blood pressure QTL cluster 9 | 2.94 | | Blood pressure | | 10 | 21607719 | 91471072 | Rat |
| 724556 | Pur2 | Proteinuria QTL 2 | 5.5 | | Renal function | | 10 | 22915259 | 95066632 | Rat |
| 61354 | Pia10 | Pristane induced arthritis QTL 10 | | .01 | Joint/bone inflammation | pristane induced | 10 | 24006429 | 160657542 | Rat |
| 631267 | Cia20 | Collagen induced arthritis QTL 20 | 3.2 | | Joint/bone inflammation | arthritis severity | 10 | 24006429 | 160657542 | Rat |
| 61325 | Aia5 | Adjuvant induced arthritis QTL 5 | | .01 | Joint/bone inflammation | arthritis severity | 10 | 24006429 | 160657542 | Rat |
| 1298069 | Bp168 | Blood pressure QTL 168 | 5.5 | | Blood pressure | salt-loaded systolic | 10 | 27184741 | 102587587 | Rat |
| 631542 | Bp82 | Blood pressure QTL 82 | 6.8 | | Blood pressure | systolic | 10 | 27184741 | 103551039 | Rat |
| 1331791 | Cm31 | Cardiac mass QTL 31 | 3.84606 | | Cardiac mass | | 10 | 29974190 | 95369088 | Rat |
| 1578779 | Tcas10 | Tongue tumor susceptibility QTL 10 | 3.12 | | Tongue tumor susceptibility | tongue tumor number | 10 | 33351756 | 78351756 | Rat |
| 631557 | Bp136 | Blood pressure QTL 136 | | .003 | Blood pressure | | 10 | 34229233 | 79229233 | Rat |
| 1576319 | Cia29 | Collagen induced arthritis QTL 29 | | | Joint/bone inflammation | type II collagen-induced | 10 | 35131252 | 95695218 | Rat |
| 61332 | Eau3 | Experimental allergic uveoretinitis QTL 3 | | .004 | Uvea inflammation score | | 10 | 35713452 | 101848683 | Rat |
| 6893342 | Cm78 | Cardiac mass QTL 78 | .1 | .88 | Cardiac mass | body weight adjusted | 10 | 36254741 | 83528010 | Rat |
| 631552 | Vetf2 | Vascular elastic tissue fragility QTL 2 | 4.5 | .0002 | Vascular lesion number | aorta | 10 | 36254741 | 95369088 | Rat |
| 2317042 | Aia20 | Adjuvant induced arthritis QTL 20 | 3.38 | | Joint/bone inflammation | adjuvant induced | 10 | 41317054 | 86317054 | Rat |
| 2317043 | Aia7 | Adjuvant induced arthritis QTL 7 | 3.82 | | Joint/bone inflammation | adjuvant induced | 10 | 41317054 | 86317054 | Rat |
| 631270 | Cia23 | Collagen induced arthritis QTL 23 | 3.9 | | Joint/bone inflammation | arthritis severity | 10 | 41339689 | 152260081 | Rat |
| 631269 | Cia22 | Collagen induced arthritis QTL 22 | 8.9 | | Joint/bone inflammation | arthritis severity | 10 | 41339689 | 152260081 | Rat |
| 724527 | Bp148 | Blood pressure QTL 148 | | .0001 | Blood pressure | | 10 | 42272656 | 87272656 | Rat |
| 61463 | Bp12 | Blood pressure QTL 12 | 6.3 | .0001 | Blood pressure | salt-loaded systolic | 10 | 42554668 | 87554668 | Rat |
| 1298078 | Stresp5 | Stress response QTL 5 | 2.99 | .00025 | Hormone level | corticosterone | 10 | 43458380 | 108776963 | Rat |
| 2300218 | Hpcl2 | Hepatic cholesterol level QTL 2 | | | Lipid level | cholesterol | 10 | 46483646 | 100090301 | Rat |
| 2293652 | Bmd22 | Bone mineral density QTL 22 | 4.9 | .0001 | Bone mineral density | | 10 | 51099067 | 85484602 | Rat |
| 2293669 | Bmd33 | Bone mineral density QTL 33 | 4.5 | .0001 | Bone mineral density | | 10 | 51099067 | 85484602 | Rat |
| 2293679 | Bmd30 | Bone mineral density QTL 30 | 3.5 | .0001 | Bone mineral density | | 10 | 51099067 | 85484602 | Rat |
| 2293705 | Bmd25 | Bone mineral density QTL 25 | 7.1 | .0001 | Bone mineral density | | 10 | 51099067 | 85484602 | Rat |
| 7207811 | Bmd90 | Bone mineral density QTL 90 | 5.2 | | Bone mineral density | Femur neck cross-sectional total area | 10 | 51099067 | 85484602 | Rat |
| 631530 | Tls3 | T-lymphoma susceptibility QTL 3 | 6.7 | .0001 | T-lymphoma susceptibility | propylnitrosourea induced | 10 | 53781298 | 100090301 | Rat |
| 631535 | Cm51 | Cardiac mass QTL 51 | 3 | | Cardiac mass | | 10 | 53792967 | 96584953 | Rat |
| 61387 | Bp1 | Blood pressure QTL 1 | 5.1 | | Blood pressure | | 10 | 53800677 | 101848470 | Rat |
| 1549846 | Scl47 | Serum cholesterol level QTL 47 | 3.6 | | Lipid level | baseline serum cholesterol | 10 | 54091148 | 99091148 | Rat |
| 70364 | Bp72 | Blood pressure QTL 72 | | | Blood pressure | | 10 | 55633982 | 100633982 | Rat |
| 70171 | Cari1 | Carrageenan-induced inflammation QTL 1 | 4.9 | .0005 | Carrageenan-induced inflammation | exudate volume | 10 | 55851811 | 101848470 | Rat |
| 70164 | Bw21 | Body weight QTL 21 | 4.36 | .00005 | Body weight | | 10 | 55851811 | 103550924 | Rat |
| 631567 | Bp91 | Blood pressure QTL 91 | | .0001 | Blood pressure | systolic | 10 | 56848683 | 101848683 | Rat |
| 1354608 | Cm33 | Cardiac mass QTL 33 | 2.8 | | Cardiac mass | left ventricle | 10 | 56930545 | 97589703 | Rat |
| 1549831 | Bss6 | Bone structure and strength QTL 6 | 4 | | Bone strength | Lumbar vertebra L5 ultimate force | 10 | 61314296 | 106314296 | Rat |
| 2293698 | Bss43 | Bone structure and strength QTL 43 | 5.33 | .0001 | Bone structure | | 10 | 62984501 | 107984501 | Rat |
| 1576308 | Schws1 | Schwannoma susceptibility QTL 1 | | .0041 | Neural tumor susceptibility | tumor incidence, length of survival time | 10 | 63816942 | 108816942 | Rat |
| 61449 | Ciaa2 | CIA Autoantibody QTL 2 | 7.1 | | Anti-type II collagen autoantibody titer | collagen induced | 10 | 64308668 | 95695218 | Rat |
| 2298548 | Neuinf7 | Neuroinflammation QTL 7 | 2.2 | | Neuroinflammation | | 10 | 65668446 | 132729388 | Rat |
| 70363 | Bp71 | Blood pressure QTL 71 | | .04 | Blood pressure | | 10 | 67677924 | 85489479 | Rat |
| 1558643 | Cm44 | Cardiac mass QTL 44 | 4.8 | .0000368 | Cardiac mass | body weight adjusted | 10 | 67677924 | 100865886 | Rat |
| 6893336 | Cm75 | Cardiac mass QTL 75 | .1 | .87 | Cardiac mass | body weight adjusted | 10 | 67677924 | 100865886 | Rat |
| 2306970 | Anxrr22 | Anxiety related response QTL 22 | 5.95 | | Anxiety response | | 10 | 67677924 | 102796362 | Rat |
| 61402 | Niddm3 | Non-insulin dependent diabetes mellitus QTL 3 | 4.58 | | Glucose level | postprandial | 10 | 67678060 | 86316831 | Rat |
| 1359017 | Hrtrt21 | Heart rate QTL 21 | 2.4 | | Heart rate | stress-induced tachycardia | 10 | 68526078 | 101292630 | Rat |
| 1358915 | Stresp7 | Stress response QTL 7 | 3.52 | | Hormone level | norepinephrine | 10 | 68955627 | 113955627 | Rat |
| 2298481 | Eau9 | Experimental allergic uveoretinitis QTL 9 | | .0169 | Uvea inflammation | | 10 | 69160380 | 86317054 | Rat |
| 1357344 | Bp249 | Blood pressure QTL 249 | | .0001 | Blood pressure | | 10 | 69986912 | 102587587 | Rat |
| 2317029 | Aia19 | Adjuvant induced arthritis QTL 19 | 2.98 | | Joint/bone inflammation | adjuvant induced | 10 | 70229781 | 115229781 | Rat |
| 2317039 | Aia6 | Adjuvant induced arthritis QTL 6 | 4.31 | | Joint/bone inflammation | adjuvant induced | 10 | 70229781 | 115229781 | Rat |
| 61396 | Bp9 | Blood pressure QTL 9 | 4.8 | .0001 | Blood pressure | salt-loaded systolic | 10 | 72871396 | 117871396 | Rat |
| 2293646 | Bss25 | Bone structure and strength QTL 25 | 10.96 | .0001 | Bone structure | | 10 | 74167134 | 119167134 | Rat |
| 2293663 | Bss33 | Bone structure and strength QTL 33 | 9.34 | .0001 | Bone structure | | 10 | 74167134 | 119167134 | Rat |
| 2300172 | Bmd57 | Bone mineral density QTL 57 | 9.8 | .0001 | Bone mineral density | | 10 | 74167134 | 119167134 | Rat |
| 6893366 | Bw106 | Body weight QTL 106 | .3 | .47 | Body weight | | 10 | 74652410 | 119652410 | Rat |
| 2306793 | Ean5 | Experimental allergic neuritis QTL 5 | 4.7 | | Peripheral nerve inflammation | demyelination | 10 | 76043832 | 98392296 | Rat |
| 70193 | Mcs7 | Mammary carcinoma susceptibility QTL 7 | 2.38 | | Mammary tumor susceptibility | | 10 | 76698917 | 121698917 | Rat |
| 2289982 | Bp303 | Blood pressure QTL 303 | | | Blood pressure | | 10 | 77091834 | 79229233 | Rat |
| 724555 | Bp150 | Blood pressure QTL 150 | | .0001 | Blood pressure | | 10 | 77091834 | 81887390 | Rat |
| 1358188 | Ept9 | Estrogen-induced pituitary tumorigenesis QTL 9 | 3.9 | | Gland mass | pituitary | 10 | 77092169 | 100633512 | Rat |
| 2292617 | Ept18 | Estrogen-induced pituitary tumorigenesis QTL 18 | 3.9 | | Gland mass | pituitary | 10 | 77092169 | 100633512 | Rat |
| 1579919 | Bp281 | Blood pressure QTL 281 | | .01 | Blood pressure | mean arterial pressure | 10 | 77956239 | 87272656 | Rat |
| 631537 | Oia4 | Oil induced arthritis QTL 4 | | | Joint/bone inflammation | arthritis susceptibility | 10 | 79229067 | 91168491 | Rat |
| 2325836 | Bp346 | Blood pressure QTL 346 | | .001 | Blood pressure | mean arterial | 10 | 79857808 | 87834315 | Rat |
| 2292438 | Bp311 | Blood pressure QTL 311 | | | Blood pressure | arterial | 10 | 79857808 | 99588446 | Rat |
| 1354641 | Bvd2 | Brain ventricular dilatation QTL 2 | 6.36 | .001 | Head/brain development | brain ventricular dilatation | 10 | 79981838 | 124981838 | Rat |
| 4889492 | Pancm2 | Pancreatic morphology QTL 2 | 3.2 | | Pancreatic morphology | | 10 | 81350126 | 126350126 | Rat |
| 724516 | Uae17 | Urinary albumin excretion QTL 17 | 3.6 | | Renal function | urine albumin level | 10 | 81887390 | 89227496 | Rat |
| 1300107 | Rf18 | Renal function QTL 18 | 3.4 | | Renal function | salt-loaded urine volume | 10 | 82474813 | 102865929 | Rat |
| 634354 | Rends3 | Renal damage susceptibility QTL 3 | | .05 | Renal histology | renal lesion severity | 10 | 83527877 | 89167279 | Rat |
| 631555 | Bp134 | Blood pressure QTL 134 | | .001 | Blood pressure | salt-loaded systolic | 10 | 84262804 | 95694117 | Rat |
| 6893357 | Bw102 | Body weight QTL 102 | .5 | .36 | Body weight | | 10 | 84262804 | 106479988 | Rat |
| 2303589 | Bw87 | Body weight QTL 87 | 2 | | Body weight | | 10 | 86057484 | 131057484 | Rat |
| 4889948 | Bss91 | Bone structure and strength QTL 91 | 4 | | Bone structure | | 10 | 86316831 | 96799937 | Rat |
| 2317754 | Glom25 | Glomerulus QTL 25 | 3.5 | | Renal pathology | urine protein level | 10 | 86810917 | 131810917 | Rat |