Cacng1 (calcium voltage-gated channel auxiliary subunit gamma 1) - Rat Genome Database

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Gene: Cacng1 (calcium voltage-gated channel auxiliary subunit gamma 1) Ictidomys tridecemlineatus
Analyze
Symbol: Cacng1
Name: calcium voltage-gated channel auxiliary subunit gamma 1
RGD ID: 12721000
Description: ENCODES a protein that exhibits calcium channel activity (inferred); calcium channel regulator activity (inferred); voltage-gated calcium channel activity (inferred); INVOLVED IN calcium ion transmembrane transport (ortholog); establishment of localization in cell (ortholog); sarcoplasmic reticulum calcium ion transport (ortholog); ASSOCIATED WITH malignant hyperthermia (ortholog); FOUND IN L-type voltage-gated calcium channel complex (inferred); membrane (inferred); monoatomic ion channel complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: voltage-dependent calcium channel gamma-1 subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560213,154,750 - 13,165,862 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365416,028,669 - 6,040,034 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365416,028,775 - 6,039,882 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cacng1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560213,154,750 - 13,165,862 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365416,028,669 - 6,040,034 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365416,028,775 - 6,039,882 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381767,044,554 - 67,056,797 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1767,044,554 - 67,056,797 (+)EnsemblGRCh38hg38GRCh38
GRCh371765,040,670 - 65,052,913 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361762,471,168 - 62,483,375 (+)NCBINCBI36Build 36hg18NCBI36
Build 341762,471,167 - 62,483,371NCBI
Celera1761,613,382 - 61,625,583 (+)NCBICelera
Cytogenetic Map17q24.2NCBI
HuRef1760,429,261 - 60,441,513 (+)NCBIHuRef
CHM1_11765,104,606 - 65,116,856 (+)NCBICHM1_1
T2T-CHM13v2.01767,920,364 - 67,932,598 (+)NCBIT2T-CHM13v2.0
Cacng1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911107,594,044 - 107,607,302 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11107,594,044 - 107,607,348 (-)EnsemblGRCm39 Ensembl
GRCm3811107,703,218 - 107,716,476 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11107,703,218 - 107,716,522 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711107,564,532 - 107,577,790 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611107,519,308 - 107,532,566 (-)NCBIMGSCv36mm8
Celera11119,438,411 - 119,451,651 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1170.29NCBI
Cacng1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81093,152,558 - 93,165,246 (-)NCBIGRCr8
mRatBN7.21092,652,924 - 92,665,612 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1092,652,614 - 92,665,783 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1097,711,022 - 97,723,710 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01097,174,042 - 97,186,732 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01092,575,656 - 92,588,362 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01095,921,479 - 95,934,170 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1095,921,174 - 95,934,345 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01095,655,624 - 95,668,315 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41097,105,707 - 97,118,400 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11097,120,076 - 97,132,770 (-)NCBI
Celera1091,318,721 - 91,331,399 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Cacng1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554786,294,974 - 6,305,669 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554786,295,046 - 6,305,625 (+)NCBIChiLan1.0ChiLan1.0
CACNG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21983,071,599 - 83,090,853 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11787,891,441 - 87,914,656 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01760,978,895 - 60,993,621 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11766,187,565 - 66,199,795 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1766,187,565 - 66,199,789 (+)Ensemblpanpan1.1panPan2
CACNG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1913,425,898 - 13,438,275 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl913,426,105 - 13,438,614 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha914,320,527 - 14,332,878 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0915,088,975 - 15,101,463 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl915,089,182 - 15,101,509 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1914,036,391 - 14,048,856 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0913,485,243 - 13,497,697 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0913,486,979 - 13,499,379 (+)NCBIUU_Cfam_GSD_1.0
CACNG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1213,463,058 - 13,481,645 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11213,462,589 - 13,481,651 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21213,833,206 - 13,844,295 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11654,383,328 - 54,397,331 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1654,383,204 - 54,396,610 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607725,422,067 - 25,435,899 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacng1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248701,333,843 - 1,344,483 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248701,333,907 - 1,344,386 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005328230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000007799   ⟹   ENSSTOP00000006984
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365416,028,669 - 6,040,034 (-)Ensembl
RefSeq Acc Id: XM_005328230   ⟹   XP_005328287
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560213,154,750 - 13,165,862 (+)NCBI
SpeTri2.0NW_0049365416,028,775 - 6,039,882 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005328287 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000006984.2
GenBank Protein KAG3268626 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005328287   ⟸   XM_005328230
- UniProtKB: I3MAG2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000006984   ⟸   ENSSTOT00000007799


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007809 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007799.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
  VDCC_g1su UniProtKB/TrEMBL
  VDCC_gsu UniProtKB/TrEMBL
NCBI Gene Cacng1 ENTREZGENE
PANTHER VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA-1 SUBUNIT UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA-1 SUBUNIT-RELATED UniProtKB/TrEMBL
Pfam Claudin_2 UniProtKB/TrEMBL
PRINTS VDCCGAMMA UniProtKB/TrEMBL
  VDCCGAMMA1 UniProtKB/TrEMBL
UniProt I3MAG2 ENTREZGENE, UniProtKB/TrEMBL