Cia5 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Cia5 (Collagen induced arthritis QTL 5) Rattus norvegicus

Symbol: Cia5
Name: Collagen induced arthritis QTL 5
RGD ID: 61436
Previously known as: Type II Collagen induced arthritis QTL 5
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: 4.9
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21091,228,102 - 104,060,283RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01094,486,204 - 107,857,673RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01094,237,414 - 107,484,761RGDRnor5.0
RGSC_v3.41095,692,240 - 110,718,848RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.11095,708,476 - 110,733,352RGD
Cross Type: F2
Strains Crossed: F344/NHsd DA/Bkl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Prkca is a candidate Gene for Cia5
Timp2 is a candidate Gene for Cia5

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
DA/Bkl  (IEA)
F344/NHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genetic regulation of T regulatory, CD4, and CD8 cell numbers by the arthritis severity loci Cia5a, Cia5d, and the MHC/Cia1 in the rat. Brenner M, etal., Mol Med. 2007 May-Jun;13(5-6):277-87.
2. Quantitative trait loci disposing for both experimental arthritis and encephalomyelitis in the DA rat; impact on severity of myelin oligodendrocyte glycoprotein-induced experimental autoimmune encephalomyelitis and antibody isotype pattern. Dahlman I, etal., Eur J Immunol 1998 Jul;28(7):2188-96
3. Genetic dissection of a rat model for rheumatoid arthritis: significant gender influences on autosomal modifier loci Furuya T, etal., Hum Mol Genet 2000 Sep 22;9(15):2241-50
4. Quest for arthritis-causative genetic factors in the rat. Joe B Physiol Genomics. 2006 Oct 3;27(1):1-11. Epub 2006 Jun 27.
5. Evaluation of quantitative trait loci regulating severity of mycobacterial adjuvant-induced arthritis in monocongenic and polycongenic rats: identification of a new regulatory locus on rat chromosome 10 and evidence of overlap with rheumatoid arthritis susceptibility loci. Joe B, etal., Arthritis Rheum 2002 Apr;46(4):1075-85.
6. Genetic dissection of collagen-induced arthritis in Chromosome 10 quantitative trait locus speed congenic rats: evidence for more than one regulatory locus and sex influences. Joe B, etal., Immunogenetics 2000 Sep;51(11):930-44.
7. COLLAGEN-INDUCED ARTHRITIS SEVERITY LOCI ON RAT CHROMOSOME 10 (RNO10) ALSO REGULATE DISEASE IN THREE OTHER EXPERIMENTALLY INDUCED MODELS OF ARTHRITIS Joe B., etal. 2000 Arthritis Rheum 43:S233
8. Identification of a novel inflammation-protective locus in the Fischer rat. Listwak S, etal., Mamm Genome 1999 Apr;10(4):362-5.
9. A genome scan localizes five non-MHC loci controlling collagen-induced arthritis in rats. Remmers EF, etal., Nat Genet 1996 Sep;14(1):82-5
10. Identification of genomic regions controlling experimental autoimmune uveoretinitis in rats. Sun SH, etal., Int Immunol 1999 Apr;11(4):529-34
11. Genetic and molecular basis of quantitative trait loci of arthritis in rat: genes and polymorphisms. Xiong Q, etal., J Immunol. 2008 Jul 15;181(2):859-64.
Related QTLs

Related QTL Description Reference
Eau3 maps to same region RGD:61073
Cia20 maps to same region RGD:631168
Pia10 maps to same region RGD:61519
Cari1 maps to same region RGD:69693
Cia22 maps to same region RGD:631168
Aia5 interacts with RGD:625379
Cia21 maps to same region RGD:631168
Cia23 maps to same region RGD:631168


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3636Scn4asodium voltage-gated channel alpha subunit 4109124693691296670Rat
3572Rgs9regulator of G-protein signaling 9109419526594270892Rat
2739Grin2cglutamate ionotropic receptor NMDA type subunit 2C10100488430100507083Rat
619757Acox1acyl-CoA oxidase 110101406197101431252Rat
619758Grb2growth factor receptor bound protein 210100881404100949193Rat
61312Timp2TIMP metallopeptidase inhibitor 210103541199103590611Rat
61824Kcnj16potassium inwardly-rectifying channel, subfamily J, member 16109599000996021356Rat
619906Ddx5DEAD-box helicase 5109172350891732210Rat
69415Cygbcytoglobin10101877675101887442Rat
70499Birc5baculoviral IAP repeat-containing 510103072530103081382Rat
3391Prkar1aprotein kinase cAMP-dependent type I regulatory subunit alpha109462104294639534Rat
3395Prkcaprotein kinase C, alpha109288939093288013Rat
2686Gh1growth hormone 1109122810291230079Rat
2657Galr2galanin receptor 210101513689101517176Rat
3763Sstr2somatostatin receptor 2109866420498671370Rat
61927Pecam1platelet and endothelial cell adhesion molecule 1109159052191652279Rat
620236Exoc7exocyst complex component 710101521630101540425Rat
628593Unc13dunc-13 homolog D10101296755101311513Rat
620666Map2k6mitogen-activated protein kinase kinase 6109537330495490406Rat
628661Abca5ATP binding cassette subfamily A member 5109524015995309195Rat
620397Cyth1cytohesin 110103402727103485826Rat
621419Kpna2karyopherin subunit alpha 2109193395191946115Rat
620012Cd79bCD79b molecule109123935491242500Rat
621648Fdxrferredoxin reductase10100507863100516649Rat
69259Axin2axin 2109389383093927042Rat
620474Sox9SRY-box transcription factor 9109780648597811994Rat
708523Septin9septin 910102409798102579056Rat
628743Cant1calcium activated nucleotidase 110103637079103650240Rat
628804Cacng4calcium voltage-gated channel auxiliary subunit gamma 4109268377892745842Rat
628805Cacng5calcium voltage-gated channel auxiliary subunit gamma 5109282744192869632Rat
621761Sumo2small ubiquitin-like modifier 210100771941100784503Rat
621087Socs3suppressor of cytokine signaling 310103193909103197322Rat
621764Foxj1forkhead box J110101566299101570370Rat
620488Milr1mast cell immunoglobulin-like receptor 1109168428891705284Rat
2249Cacng1calcium voltage-gated channel auxiliary subunit gamma 1109265292492665612Rat
1307049Helzhelicase with zinc finger109247940392645234Rat
621095H3f3bH3.3 histone B10101256484101258716Rat
1304830Otop2otopetrin 210100564727100574298Rat
620048Sphk1sphingosine kinase 110101758567101764240Rat
621334Syngr2synaptogyrin 210103029903103034473Rat
620837Lgals3bpgalectin 3 binding protein10103619912103629251Rat
620083Atp5pdATP synthase peripheral stalk subunit d10100657700100662960Rat
1304594Cog1component of oligomeric golgi complex 1109869548198708495Rat
620206Prpsap1phosphoribosyl pyrophosphate synthetase-associated protein 110101701094101750753Rat
621014Tk1thymidine kinase 110103034755103046125Rat
735117Slc16a6solute carrier family 16, member 6109442437794447482Rat
1304846Amz2archaelysin family metallopeptidase 2109440154694412116Rat
2928Itgb4integrin subunit beta 410101206657101243012Rat
620032Wbp2WW domain binding protein 210101312476101320775Rat
1305573Rpl38ribosomal protein L38109970133099705004Rat
1305112Tex2testis expressed 2109143662991546240Rat
1305128Polg2DNA polymerase gamma 2, accessory subunit109171258691723008Rat
1306364Fam20aFAM20A, golgi associated secretory pathway pseudokinase109463883694697814Rat
1305426Cd300leCd300 molecule-like family member E10100271076100280400Rat
1306397Cpsf4lcleavage and polyadenylation specific factor 4-like109874181698756069Rat
1306284Mettl23methyltransferase 23, arginine10102047090102053379Rat
1309937Usp36ubiquitin specific peptidase 3610103497349103528877Rat
1307069Abca8ATP binding cassette subfamily A member 8109491752094991199Rat
1305052Pgs1phosphatidylglycerophosphate synthase 110103214635103250254Rat
1307333Abca8aATP-binding cassette, subfamily A (ABC1), member 8a109500233495072315Rat
1305188Mgat5balpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B10102120757102190235Rat
1304551Ush1gUSH1 protein network component sans10100559721100563590Rat
1305931Abca9ATP binding cassette subfamily A member 9109507761595137751Rat
1306663Otop3otopetrin 310100577346100588729Rat
1307394Mfsd11major facilitator superfamily domain containing 1110102055516102075064Rat
708538Nherf1NHERF family PDZ scaffold protein 110100403189100420290Rat
1310027Tnrc6ctrinucleotide repeat containing adaptor 6C10102908958102979543Rat
1305395Jmjd6jumonji domain containing 6, arginine demethylase and lysine hydroxylase10102041131102047182Rat
1305375Galk1galactokinase 110101243146101247323Rat
1305376Srp68signal recognition particle 6810101481213101508035Rat
1307039Bptfbromodomain PHD finger transcription factor109198027992082731Rat
61968Kcnj2potassium inwardly-rectifying channel, subfamily J, member 2109606083496071397Rat
2006Aanataralkylamine N-acetyltransferase10101827072101831805Rat
1307754Wipi1WD repeat domain, phosphoinositide interacting 1109454294694580174Rat
1560307Llgl2LLGL scribble cell polarity complex component 210101050978101086527Rat
1309738Caskin2cask-interacting protein 210101027196101041429Rat
1307288Prr29proline rich 29109130582091320661Rat
1310397Sdk2sidekick cell adhesion molecule 2109882491699102590Rat
1307953Tmem104transmembrane protein 10410100427244100485890Rat
1309553Gga3golgi associated, gamma adaptin ear containing, ARF binding protein 310100825427100843422Rat
1309733Cd300lfCd300 molecule-like family member F10100359942100376130Rat
1310823Recql5RecQ like helicase 510101126544101165739Rat
1311298Ubald2UBA-like domain containing 210101662507101667089Rat
1559716Ern1endoplasmic reticulum to nucleus signaling 1109132688991421201Rat
1306881Cdr2lcerebellar degeneration-related protein 2-like10100625150100638669Rat
1309699Rhbdf2rhomboid 5 homolog 210101833157101860283Rat
1311078Ten1TEN1 subunit of CST complex10101431328101455105Rat
1310868Engaseendo-beta-N-acetylglucosaminidase10103707169103719833Rat
1311352Trim80tripartite motif protein 8010100682826100691152Rat
1311408Gprc5cG protein-coupled receptor, class C, group 5, member C109988690099908928Rat
1359207Mtnap1mitochondrial nucleoid associated protein 1109872866198738693Rat
1311981Slc39a11solute carrier family 39, member 11109827595898697042Rat
1311567Cdc42ep4CDC42 effector protein 4109877261398797924Rat
1308998Abca6ATP binding cassette subfamily A member 6109514280595212087Rat
1310625Apohapolipoprotein H109334243593356334Rat
1309224Unkunk zinc finger10101265732101295950Rat
1310067Smurf2SMAD specific E3 ubiquitin protein ligase 2109176179891862485Rat
1311422Hid1HID1 domain containing10100589555100610050Rat
1310221Gna13G protein subunit alpha 13109433793994370774Rat
1306571Arsgarylsulfatase G109441226194551224Rat
1309164Mrps7mitochondrial ribosomal protein S710100843691100846838Rat
1309685Mif4gdMIF4G domain containing10100847168100852166Rat
1307096Nat9N-acetyltransferase 910100422326100427510Rat
1310297Ube2oubiquitin-conjugating enzyme E2O10101765572101812736Rat
1306141Evplenvoplakin10101458227101474778Rat
1310662Fbf1Fas binding factor 110101375769101401624Rat
1307942Mrpl58mitochondrial ribosomal protein L5810100646374100652871Rat
1309655Cep95centrosomal protein 95109173211191760095Rat
1310043Armc7armadillo repeat containing 710100723080100739636Rat
1566063Kctd2potassium channel tetramerization domain containing 210100663013100674756Rat
1559519Rpl14-ps1ribosomal protein L14, pseudogene 110101823987101824649Rat
1559926Gpr142G protein-coupled receptor 142109984006999843410Rat
1559936Kif19kinesin family member 19109980018599826546Rat
1562974Qrich2glutamine rich 210101669240101697643Rat
1561778Cd300c2CD300C molecule 210100253312100258553Rat
1359325Jpt1Jupiter microtubule associated homolog 110100744468100762504Rat
1359290Rpl17-ps16ribosomal protein L17, pseudogene 16109237373592374368Rat
1563805Dnah17dynein, axonemal, heavy chain 1710103244144103364953Rat
1563057CD300c-ps2CD300c molecule, pseudogene 210100198793100203759Rat
1311180Mrpl38mitochondrial ribosomal protein L3810101365353101372159Rat
1359305Psmd12proteasome 26S subunit, non-ATPase 12109243822392457323Rat
1564168Cep112centrosomal protein 112109336605993833133Rat
1359660Icam2intercellular adhesion molecule 2109130860891319536Rat
1559482Igsf7 l1immunoglobulin superfamily, member 7 like 110100174955100182713Rat
1560747St6galnac2ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 210101910220101928412Rat
1311942Nup85nucleoporin 8510100806482100825029Rat
1311950Fads6fatty acid desaturase 610100522981100538181Rat
1560070Rbfox3RNA binding fox-1 homolog 310103720355104157277Rat
1562048St6galnac1ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 110101972656101983053Rat
1359422Srsf2serine and arginine rich splicing factor 210102052158102055365Rat
1359554Slc25a19solute carrier family 25 member 1910100853554100867517Rat
1562156Cd300ldl1Cd300 molecule-like family member D like 110100056712100078276Rat
1562969Ttyh2tweety family member 2109970906399753449Rat
1359602Dnai2dynein, axonemal, intermediate chain 2109975996699793379Rat
1582971Rps23-ps9ribosomal protein S23, pseudogene 9109243427492434789Rat
1582896Slc16a5solute carrier family 16 member 510100707434100721338Rat
1583719Cd300aCd300a molecule109992980199942674Rat
1359204C1qtnf1C1q and TNF related 110103660319103681662Rat
1586145Rpl6-ps9ribosomal protein L6, pseudogene 910100299625100302548Rat
1565033C10h17orf58similar to human chromosome 17 open reading frame 58109197293891977606Rat
1584081Nol11nucleolar protein 11109211900092141688Rat
15595781700012B07RklRIKEN cDNA 1700012B07 gene like109477147194804839Rat
1563331Btbd17BTB domain containing 17109982613299832624Rat
1562577Actb-ps10actin, beta, pseudogene 10109214217692143796Rat
1565086Ube2c-ps1ubiquitin-conjugating enzyme E2C, pseudogene 1109707829097079160Rat
1565161Cd300cCD300c molecule10100228254100233207Rat
1565537Sap30bpSAP30 binding protein10101165777101198503Rat
1563409Vcf1VCP nuclear cofactor family member 1109870740498728486Rat
1564512Slc25a5-ps5solute carrier family 25 member 5, pseudogene 510100174797100175737Rat
1562667Cd300c2l1CD300C molecule 2 like 110100136144100140607Rat
1586374Smim5small integral membrane protein 510101134033101139814Rat
1592119Igsf7immunoglobulin superfamily, member 710100153767100161589Rat
1585137Cd300eCd300e molecule10100289729100309996Rat
1565459Mifl4macrophage migration inhibitory factor like 4109419199894192520Rat
1559458CD300c-ps1CD300c molecule, pseudogene 110100004943100010110Rat
1583718Cd300lbCD300 molecule-like family member b109996480199974790Rat
1559497Trim65tripartite motif-containing 6510101357937101364036Rat
1563123Sec14l1SEC14-like lipid binding 110102319920102367070Rat
1586269Slc25a5-ps8solute carrier family 25 member 5, pseudogene 810100260249100261714Rat
1594666Mxra7matrix remodeling associated 710102003034102031428Rat
1597379Tsen54tRNA splicing endonuclease subunit 5410101041607101050088Rat
1591140Tha1threonine aldolase 110103094681103100169Rat
1591141Tmem235transmembrane protein 23510103081716103092187Rat
1591143Afmidarylformamidase10103046129103061718Rat
1591144C10h17orf99smilar to human chromosome 17 open reading frame 9910103015371103027407Rat
1591146Tmc6transmembrane channel like 610102982059102999509Rat
1597365Myo15bmyosin XVB10101088734101126159Rat
1591150Tmc8transmembrane channel-like 810103000038103010601Rat
1591154Rnf157ring finger protein 15710101571972101639874Rat
1597317Trim47tripartite motif-containing 4710101337573101342044Rat
1597046Cep295nlCEP295 N-terminal like10103562190103581183Rat
1597047Pitpnc1phosphatidylinositol transfer protein, cytoplasmic 1109216355892428971Rat
1597401Rpl10a-ps5ribosomal protein L10A, pseudogene 5109417369994175006Rat
2319739Cd300ldCd300 molecule-like family member D10100082957100115853Rat
2319982Rab37RAB37, member RAS oncogene family10100334639100401974Rat
2321678Rps18l1ribosomal protein S18-like 110101204519101205067Rat
2323140Fcf1-ps2Fcf1 rRNA-processing protein, pseudogene 2109670907896709724Rat
2321875Nt5c5', 3'-nucleotidase, cytosolic10100739591100742276Rat
4888579Mir3577microRNA 357710101023869101023981Rat
6488368LOC100912202uncharacterized LOC100912202109461743494621315Rat
6488422Prcdphotoreceptor disc component10101887192101907647Rat
6489294LOC100912002uncharacterized LOC10091200210102275964102278092Rat
6487731LOC100912319uncharacterized LOC10091231910102797707102845427Rat
6502330Cd300cl1CD300c molecule like 110100117788100126304Rat
7529341LOC102550334uncharacterized LOC102550334109404316194103566Rat
7539496LOC102548046uncharacterized LOC10254804610103055865103057531Rat
7503996LOC102552044uncharacterized LOC10255204410101320917101341100Rat
7650056LOC102546698uncharacterized LOC102546698109143517591435535Rat
7651542Rpl23a-ps1ribosomal protein L23a, pseudogene 1109491637594916960Rat
7625474LOC102550846uncharacterized LOC102550846109431685794318116Rat
7658394LOC102548022uncharacterized LOC102548022109923331399267271Rat
7611149LOC102549596uncharacterized LOC102549596109804971498085007Rat
7555371LOC102546977uncharacterized LOC10254697710102767337102772610Rat
7593118LOC102547687uncharacterized LOC102547687109906304999071550Rat
7579672LOC102550782uncharacterized LOC102550782109424150994246052Rat
7551922LOC102550454uncharacterized LOC102550454109416157394170717Rat
7606875LOC102547461uncharacterized LOC10254746110102365521102371047Rat
7566917LOC102549521uncharacterized LOC102549521109801374198022561Rat
7693387LOC102551705uncharacterized LOC102551705109551345495528950Rat
7683659LOC102548791uncharacterized LOC10254879110103655144103658176Rat
7685108Tmem94transmembrane protein 9410100991523101027046Rat
7689502LOC102547853uncharacterized LOC102547853109890697998941230Rat
7737388LOC102547123uncharacterized LOC102547123109763351897648796Rat
7734651LOC102549836uncharacterized LOC102549836109807489798232243Rat
7698326LOC102550112uncharacterized LOC102550112109401627294038653Rat
7720946Smim6small integral membrane protein 610101144577101147160Rat
7727987Mea1-ps1male-enhanced antigen 1, pseudogene 1109223205792232595Rat
9136714LOC103693474uncharacterized LOC103693474109775472397756670Rat
9228340LOC103693477uncharacterized LOC10369347710100312410100321685Rat
9443602Cd300ld-ps1Cd300 molecule-like family member D, pseudogene 110100188157100192555Rat
9685093Mir3064microRNA 3064109172580091725866Rat
9685629Mir297microRNA 297109821647998216544Rat
10412358Khps1asphk1a antisense transcript10101758466101759755Rat
11444070LOC108352227uncharacterized LOC108352227109393581193938379Rat
11437264LOC108352149uncharacterized LOC108352149109190004691902191Rat
11366916LOC108352157uncharacterized LOC108352157109813640098152364Rat
11422283LOC108352188high mobility group protein B3 pseudogene109765561197657071Rat
11358786LOC108352154uncharacterized LOC108352154109636815996380190Rat
11396194LOC108352153uncharacterized LOC108352153109631197996366541Rat
11407049Trnar-ccu7transfer RNA arginine (anticodon CCU) 710100654877100654949Rat
11397811LOC108352150uncharacterized LOC108352150109271883292732169Rat
11411384LOC108352151uncharacterized LOC108352151109278403392784721Rat
11391163LOC108352161uncharacterized LOC10835216110101907879101909302Rat
11381410LOC108352228uncharacterized LOC108352228109576427695778029Rat
11506243LOC108352160uncharacterized LOC10835216010101571155101586495Rat
11507218Trnar-ccu8transfer RNA arginine (anticodon CCU) 810100655228100655300Rat
11508819Trnar-ccg2transfer RNA arginine (anticodon CCG) 2109195840491958476Rat
11498743LOC108352146uncharacterized LOC108352146109126843491276253Rat
11494208Trnar-ucg2transfer RNA arginine (anticodon UCG) 210100655695100655767Rat
41378255LOC120095210uncharacterized LOC120095210109839472598400326Rat
41380343LOC120095357U6 spliceosomal RNA10101808139101808246Rat
41249041Scarna16small Cajal body-specific RNA 1610102276365102276548Rat
41357600LOC120095209uncharacterized LOC120095209109745199197464219Rat
41384166Trnap-agg83transfer RNA proline (anticodon AGG) 83109145255691452636Rat
41285482Rps10-ps6ribosomal protein S10, pseudogene 6109140280291403291Rat
41116026LOC120095212uncharacterized LOC120095212109937129899400738Rat
41360186Trnaa-agc91transfer RNA alanine (anticodon AGC) 91109178763191787711Rat
41387346LOC120095201uncharacterized LOC120095201109410493294119320Rat
41145218LOC120095207uncharacterized LOC120095207109717843497201392Rat
41259286Snord1csmall nucleolar RNA, C/D box 1C10101905797101905872Rat
41147005LOC120095205uncharacterized LOC120095205109600747396018517Rat
41147803LOC120095202uncharacterized LOC120095202109413667794144071Rat
41119811LOC120095390small nucleolar RNA SNORA7010100964850100964982Rat
41120726LOC120095203uncharacterized LOC120095203109428954194296979Rat
41212192LOC120095354U6 spliceosomal RNA10103024725103024828Rat
41189455LOC120095199uncharacterized LOC120095199109386833193886407Rat
41366572LOC120095340uncharacterized LOC12009534010103119236103123667Rat
41394609Slc25a6-ps2solute carrier family 25 member 6, pseudogene 210100153609100154533Rat
41126172LOC120095367U6 spliceosomal RNA10100841109100841219Rat
41268363LOC120095397small nucleolar RNA R3810101907729101907804Rat
41070056Dppa2l-ps3developmental pluripotency-associated 2 like, pseudogene 310100994741100999028Rat
41291495LOC120095432U11 spliceosomal RNA109209115592091288Rat
41186811LOC120095410small nucleolar RNA SNORA8109231467392314811Rat
41374005LOC120095217uncharacterized LOC12009521710102722625102723996Rat
41400420LOC120095402small nucleolar RNA SNORA67109977276499772893Rat
41106371Trnaa-ugc10transfer RNA alanine (anticodon UGC) 10109848991898489992Rat
41163197LOC120095221uncharacterized LOC12009522110103262366103264333Rat
41231368Snora50csmall nucleolar RNA, H/ACA box 50C109143557091435702Rat
41351506LOC120095301survival of motor neuron-related-splicing factor 30-like109187048191872151Rat
41131801LOC120095213uncharacterized LOC12009521310101490110101491580Rat
41200060LOC120095355U6 spliceosomal RNA10100984804100984906Rat
41352320LOC120095197uncharacterized LOC120095197109266150292683626Rat
41132968LOC120093044small nucleolar RNA SNORA1910100770794100770925Rat
40948865LOC120095337uncharacterized LOC120095337109930475999312501Rat
40973555LOC120095198uncharacterized LOC120095198109382537593830198Rat
40973997Rpl12-ps9ribosomal protein L12, pseudogene 910102335984102342705Rat
41339413LOC120095215uncharacterized LOC12009521510102700854102711178Rat
41341585Trnaa-agc73transfer RNA alanine (anticodon AGC) 7310100332749100332832Rat
41006281LOC120095211uncharacterized LOC120095211109912871999139667Rat
40961797Ftl1-ps10ferritin light chain 1, pseudogene 1010100802981100803581Rat
40962029LOC120095218uncharacterized LOC12009521810102722060102756134Rat
40962635LOC120095338uncharacterized LOC12009533810102679056102679709Rat
40991355LOC120095206uncharacterized LOC120095206109605691996060698Rat
40942668LOC120093105uncharacterized LOC12009310510101343364101364468Rat
40994897LOC120095200uncharacterized LOC120095200109398628694022344Rat
41047789LOC120095216uncharacterized LOC12009521610102709185102716649Rat
41242416LOC120095220uncharacterized LOC12009522010103115944103119116Rat
41243579LOC120095219uncharacterized LOC12009521910103113533103115901Rat
41075578Snord104small nucleolar RNA, C/D box 104109143531391435382Rat
41304974LOC120095194uncharacterized LOC120095194109205226592054945Rat
41017670Snora80dsmall nucleolar RNA, H/ACA box 80D109218865792188789Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34100D10Mgh3144109560033495600487Ratregion
34202D10Mgh1613410102359683102359817Ratregion
34485D10Mgh4116109236936492369470Ratregion
36283D10Rat15170109223832792238497Ratregion
36297D10Rat52149109258511992585263Ratregion
35256D10Rat11190109612091196121100Ratregion
35364D10Rat614610101435864101436010Ratregion
35386D10Rat8157109940697199407128Ratregion
36494D10Rat517210103349037103349209Ratregion
36624D10Rat13306109269895992699242Ratregion
34779D10Rat53128109318476493184904Ratregion
34941D10Rat717310101012337101012510Ratregion
35573D10Rat10127109580377395803900Ratregion
35627D10Rat12170109472486094725019Ratregion
35665D10Rat415610102134116102134272Ratregion
35705D10Rat14172109273262192732793Ratregion
39928D10Rat189200109322381693224011Ratregion
40488D10Rat201162109827943498279596Ratregion
40572D10Rat203138109210872292108854Ratregion
38542D10Rat132234109670304396703281Ratregion
40070D10Rat188130109672505096725180Ratregion
38844D10Rat101206109821135998211570Ratregion
39136D10Rat74212109450556294505776Ratregion
39358D10Rat88211109802573698025938Ratregion
42259D10Rat54326109167613091676468Ratregion
41382D10Rat136164109789809697898372Ratregion
41382D10Rat136164109789820697898372Ratregion
42934D10Rat233230109466470594664919Ratregion
42935D10Rat232200109662147796621674Ratregion
42936D10Rat231240109855410198554338Ratregion
42937D10Rat229210109888103598881244Ratregion
42938D10Rat228118109902101699021131Ratregion
42939D10Rat268158109952612899526290Ratregion
42940D10Rat227233109938417899384416Ratregion
42373D10Rat267138109677281196772940Ratregion
40824D10Rat138223109377473393774956Ratregion
41042D10Rat13420710103784905103785112Ratregion
41860D10Rat230208109833495198335153Ratregion
44824D10Got142117109216311792163234Ratregion
44825D10Got144188109220606292206252Ratregion
44826D10Got143239109223825792238496Ratregion
44827D10Got146161109246860792468768Ratregion
44829D10Got147188109377675893776944Ratregion
44830D10Got145155109331690693317061Ratregion
44832D10Got148268109405827594058543Ratregion
44833D10Got149206109477502594775230Ratregion
44835D10Got150282109481267594812957Ratregion
44836D10Got154107109701014797010254Ratregion
44837D10Got152142109773056397730705Ratregion
44837D10Got152142109773056397730821Ratregion
44838D10Got153111109645978696459897Ratregion
44839D10Wox7155109895262698952741Ratregion
44840D10Got156154109924882999248983Ratregion
44841D10Got15820610100308669100308873Ratregion
59972D10Got151288109484566794845954Ratregion
59973D10Got15517110100299840100300011Ratregion
59974D10Got15713010100604759100604889Ratregion
59976D10Got163112109397731093977416Ratregion
61275D10Arb2215010104060133104060283Ratregion
66415D10Mco44249109792435797924612Ratregion
66502D10Mco69230109545398295454218Ratregion
66520D10Mco70255109683600696836268Ratregion
66521D10Mco71263109908049599080758Ratregion
66524D10Mco74400109220852692209113Ratregion
66563D10Mco6187109800301998003205Ratregion
66565D10Mco7314109474110494741420Ratregion
66715D10Mco15183109399574993995963Ratregion
1578868D10Chm159239109285351892853761Ratregion
1578819D10Chm88248109437176594372013Ratregion
1578836D10Chm158250109219147692191728Ratregion
1578851D10Chm47241109505338095053621Ratregion
1578856D10Chm233290109281103592811329Ratregion
1630499D10Wox5227410101827515101827789Ratregion
1578873D10Chm43200109475780494758004Ratregion
1578874D10Chm155193109555219195552352Ratregion
1578879D10Chm11203109448162894481831Ratregion
1578882D10Chm66219109465076294650983Ratregion
1578890D10Chm249243109544500895445251Ratregion
1578893D10Chm84250109797137297971624Ratregion
1578902D10Chm253223109520320695203427Ratregion
1578908D10Chm83177109762834897628527Ratregion
1578916D10Chm234278109343128893431570Ratregion
1578920D10Chm55195109437179894372013Ratregion
1578923D10Chm235254109385305193853309Ratregion
1578932D10Chm54280109442178594422085Ratregion
1578941D10Chm23199109472858194728780Ratregion
1578962D10Chm238250109234820192348453Ratregion
1578975D10Chm240249109436926894369519Ratregion
1578978D10Chm19160109299748292997642Ratregion
1578980D10Chm12206109298153092981737Ratregion
1578983D10Chm156231109593302595933179Ratregion
1579000D10Chm241238109591294795913183Ratregion
1579012D10Chm86246109758650797586753Ratregion
1579046D10Chm157157109448166594481822Ratregion
1579053D10Chm232275109188651491886791Ratregion
1579065D10Chm261224109511359295113816Ratregion
1579067D10Chm250218109596853395968747Ratregion
1579089D10Chm82205109764399997644206Ratregion
1579093D10Chm14218109475975994759977Ratregion
1579123D10Chm25202109490166794901869Ratregion
1579125D10Chm48201109490939194909592Ratregion
1579130D10Chm154233109496514194965338Ratregion
1579131D10Chm87231109438435094384581Ratregion
1579137D10Chm21183109431541294315597Ratregion
1579139D10Chm10201109234820192348404Ratregion
1579146D10Chm160249109373202493732273Ratregion
1579165D10Chm44-2200109482863294828832Ratregion
1579168D10Chm260250109510706995107320Ratregion
1579174D10Chm49209109280602592806238Ratregion
1579176D10Chm67150109474655594746705Ratregion
1579177D10Chm90250109435272094352970Ratregion
1626942Galr223010101514753101514983Ratregion
1626975Aanat23010101831462101831692Ratregion
1627187Srp6817910101481406101481585Ratregion
1628185D10Got218245109387914493879389Ratregion
1628374D10Got234134109355315493553288Ratregion
1628621D10Wox3218610104060093104060279Ratregion
1641151D10Wox43148109124649591246643Ratregion
1632738D10Got24917410100278016100278190Ratregion
1635021D10Cebr220010101545465101545665Ratregion
1635341D10Got219179109978608799786266Ratregion
7192936Sox9396109778676197787157Ratregion
7193029Sox90109780822597809532Ratregion
7191222D10MIT11226109730789597308109Ratregion
5038788RH127333218109870743698707654Ratregion
5036161D11Bwg0554e21210103637078103637290Ratregion
5036169D11Wsu175e22410102052252102052476Ratregion
5036382Kcnj2196109606775096067946Ratregion
5038992RH12745018810101910284101910472Ratregion
5036462Ppicap21810103620024103620242Ratregion
5039056RH127487193109975324099753433Ratregion
5039084RH12750318410101365444101365628Ratregion
5036869AU04946514810101572087101572235Ratregion
5036877AU04948927710100438726100439003Ratregion
5036901AU049565192109260296992603161Ratregion
5036949AU049721264109700996897010232Ratregion
5037091RH46167152109500800895008254Ratregion
5037117D4S2570E10710102055017102055124Ratregion
5037127D17S1792256109433235294332608Ratregion
5035578DDX5164109172690391727067Ratregion
5035719WI-22548224109172352891723752Ratregion
5031342PMC148819P151310103195568103196081Ratregion
7205792RH4709611110101257662101257861Ratregion
7206096Timp213010103590354103590484Ratregion
7206098Ddc841510103568065103568480Ratregion
7206100Timp210710103553466103553573Ratregion
7206102Timp210510103556030103556135Ratregion
7206104Timp212010103545903103546023Ratregion
7206106Timp217210103543868103544040Ratregion
5028725AFMa071ze921910101802958101803177Ratregion
5031494AU048139145109846648698466631Ratregion
5028851RH142572127109452522694525353Ratregion
5031534AU048011293109527240595272693Ratregion
5034173RH14164621510102275350102275565Ratregion
5034241RH141897197109172368091723877Ratregion
5028949RH142936235109173341091733645Ratregion
5028965RH142998119109607104996071168Ratregion
5031816AU047058180109684101696841196Ratregion
5026472RH132341189109996279899962987Ratregion
5026492RH13241920010100488625100488825Ratregion
5026734RH13333218310101877700101877883Ratregion
5032036AU02895214210103121575103121717Ratregion
5032299AV220920120109781023597810355Ratregion
5035082Cda0wb1114710100824847100824994Ratregion
5026970RH13422820010101198267101198467Ratregion
5029585BE101386165109187085391871018Ratregion
5032399AI606893125109464291894643043Ratregion
5034970BGH65109122838491228661Ratregion
5032753RH13517520410100742847100743051Ratregion
5033021RH137301180109403159494031774Ratregion
5030365AW533983187109383290593833092Ratregion
5025244RH12757019010100847211100847401Ratregion
5025274RH12768821410101701122101701336Ratregion
5027815RH94851241109289450792894747Ratregion
5030425BF397540187109768370897683895Ratregion
5030455BF403105164109222136892221532Ratregion
5025378RH128086204109442463694424840Ratregion
5028123D11Mit10215210101826812101826964Ratregion
5028218D2Mit273137109155207191552208Ratregion
5030773AW535161182109178383391784015Ratregion
5025628RH12904918010103681377103681557Ratregion
5033797RH140159194109386838493868578Ratregion
5025780RH129637150109994289199943041Ratregion
5031177BF413613154109437294594373099Ratregion
5053537RH142706170109130439991304569Ratregion
5053611RH14274915310100853609100853762Ratregion
5051731RH9462516210101242819101242981Ratregion
5056569RH144454297109882793498828231Ratregion
5057063D7Arb609a967109830246798303434Ratregion
5057430AI030123215109197738491977599Ratregion
5057474AA858847194109172498291725176Ratregion
5052119RH94850204109289486992895073Ratregion
5055349RH143750300109261309092613390Ratregion
5058704BE102341205109461308094613285Ratregion
5056501RH14441523210100589776100590008Ratregion
5056501RH14441523210100589776100590008Ratregion
5056411RH144363229109602031096020539Ratregion
5055637RH14391610510101341842101341947Ratregion
5055743RH143977133109527396695275221Ratregion
5053685RH142792127109173524991735376Ratregion
5049848RH133716192109870725398708433Ratregion
5050034RH13382419310100882910100883103Ratregion
5050128RH13387820710101307291101307498Ratregion
5050874RH134308183109491758194917764Ratregion
5050968RH13436218910103250012103250201Ratregion
5050154RH13389321510103542146103542361Ratregion
5053013RH14240416610101196330101196496Ratregion
5054311RH143151100109607659796076697Ratregion
5054485RH143251196109198035091980545Ratregion
5053153RH14248412110101164535101164656Ratregion
5054641RH143341101109261692992617030Ratregion
5044208RH130471182109437509194375273Ratregion
5043410RH130010199109877269298772891Ratregion
5043592RH13011322010102009405102010773Ratregion
5045206RH131045200109216380792164007Ratregion
5041400RH12883519310100310416100310609Ratregion
5046106RH13156118010101516894101517074Ratregion
5044266RH130504199109198046891980667Ratregion
5044616RH130706150109990550899905658Ratregion
5048688RH13304821710103637140103637357Ratregion
5044382RH13057018010101764046101764226Ratregion
5044900RH13086819810101242714101242912Ratregion
5045098RH13098218010101049740101049920Ratregion
5048838RH13313522010103347056103347276Ratregion
5045848RH131413194109454270294542896Ratregion
5045862RH1314220109462039694620556Ratregion
5045874RH13142820110102041227102041428Ratregion
5049138RH13330721110102051347102051714Ratregion
5049124RH13329919610102074320102074516Ratregion
5046836RH131982010101358040101358251Ratregion
5046868RH13200119210101026820101027018Ratregion
5048018RH13266118410100485562100485746Ratregion
5048142RH13273218010101295574101295754Ratregion
5049332RH13342020310101312455101312658Ratregion
5049464RH133496220109807585898076078Ratregion
5048270RH132806187109523768995237876Ratregion
5048292RH132819192109265266392652855Ratregion
5047252RH13222119610102805250102805446Ratregion
5039412RH127691182109159068191590865Ratregion
5047386RH13229720110103055929103057382Ratregion
5048350RH13285220210100401733100401935Ratregion
5048432RH13290020310102979127102979330Ratregion
5042466RH12945120110102003070102003271Ratregion
5048516RH132948181109926391999264100Ratregion
5040164RH128126203109198129091981493Ratregion
5042776RH129639193109994267699942869Ratregion
5042812RH12966018010100739629100739809Ratregion
5039482RH127731182109601929896019480Ratregion
5043214RH129897198109463929594639493Ratregion
5039670RH127839211109223258692232928Ratregion
5042374RH129397188109187163991871827Ratregion
5040632RH12839419010101126624101126814Ratregion
5040116RH12809819310100657809100659111Ratregion
5042772RH129636229109187161791871846Ratregion
5041162RH12869818010103541216103541396Ratregion
5043764RH130214181109870910098709281Ratregion
5042890RH12970618310102006688102006871Ratregion
5041322RH12879018410101406255101406439Ratregion
5041382RH128825164109441047494410638Ratregion
5074054RH137792140109323863993238779Ratregion
5072538RH136907203109463929694639499Ratregion
5075420RH138583146109818524198185387Ratregion
5074836RH138246129109441188694412015Ratregion
5076148RH139007145109463833294638477Ratregion
5076880RH139432162109420156394201725Ratregion
5079684RH14114318910101086237101086426Ratregion
5077260RH13965421610102051833102052049Ratregion
5078016RH140093184109176340591763589Ratregion
5077980RH14007220010101521253101521453Ratregion
5078060RH140121187109463919294639379Ratregion
5078426RH14033617110100596161100596332Ratregion
5078582RH140427130109454243194542561Ratregion
5078592RH140433216109873597798736774Ratregion
5070754RH13468521010101458302101458512Ratregion
5070800RH134713201109781174097811941Ratregion
5070836RH134733187109392664993926836Ratregion
5072948RH13714619710101337739101337936Ratregion
5080310RH141506180109845625398456433Ratregion
5080530RH141633181109282770592827886Ratregion
5071436RH135081197109211919792119394Ratregion
5073586RH137521128109149165691491784Ratregion
5073782RH137635151109124581791245968Ratregion
5072958RH137152189109877274498772933Ratregion
5073882RH137693207109336147393361680Ratregion
5073960RH137738146109982623599826381Ratregion
5074098RH137820159109176518991765348Ratregion
5074120RH137833130109184015691840286Ratregion
5073258RH13733221210101196214101196426Ratregion
5074352RH137967191109468414694684337Ratregion
5071454RH13509121510100854515100854730Ratregion
5071546RH13514518310102632184102632367Ratregion
5073548RH137500180109442923894429418Ratregion
5072204RH13671314410100821969100822113Ratregion
5074772RH13820916610103498793103498959Ratregion
5071902RH13535120410101574034101574238Ratregion
5067086AU04797316710102378945102379112Ratregion
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5067162AU047923109109155614391556252Ratregion
5067216AU04789115310102235509102235659Ratregion
5067226AU04788526310102999096102999355Ratregion
5067228AU04788414510101240329101240474Ratregion
5067434AU047748130109730787097308000Ratregion
5067556AU04767415810102676230102676388Ratregion
5067794AU04753229710102019712102020006Ratregion
5067794AU04753229710102019712102020095Ratregion
5068302AU047226174109971240499712880Ratregion
5069488AU046465153109230605892306206Ratregion
5070159RH9450695109463755594637650Ratregion
5070159RH9450695109463755594637650Ratregion
5070257RH9456319210100488555100488747Ratregion
5070267RH94568152109124696191247113Ratregion
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5062818AW528310100109437383994373939Ratregion
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5066060BE116687156109806103098061186Ratregion
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5066218PMC102575P1570109172519791725767Ratregion
5066304PMC148819P213710103195944103196081Ratregion
5061376BE099716155109127761291277767Ratregion
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5086923BQ191940203109481609094816297Ratregion
5082181BI280353185109132692791327112Ratregion
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5087291BQ208647168109216635992166529Ratregion
5087903Grin2c17910100488917100489096Ratregion
5087472PMC199556P19010101412196101412286Ratregion
5087504PMC21059P263510101406415101407050Ratregion
5088116Sox9207109780926897809475Ratregion
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5084560AI177621212109130871791308929Ratregion
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5085070Foxj126110101567503101567764Ratregion
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5081120RH141976209109600752096007729Ratregion
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5080844RH14181519610100422577100423237Ratregion
5081262RH142059220109449599194496211Ratregion
5081282RH142070200109871971098719910Ratregion
5084746AI22853024910103835819103836072Ratregion
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5085776BQ211419153109807496098075113Ratregion
5085870AA866270200109143679791436993Ratregion
5503885SSTR2404109866993598670339Ratregion
5505285Axin2105109389934693899451Ratregion
5505338Jmjd6140810102043461102044869Ratregion
5505526D2S147115310103878082103879235Ratregion
5506433UniSTS:479265010102054314102055148Ratregion
5506741G45081144109406247094062614Ratregion
5507049UniSTS:22418015810101256889101257047Ratregion
5507149UniSTS:22485771109124740991247480Ratregion
5507071UniSTS:224328192109548768495487876Ratregion
5506971fc37g07.x10109827953898280010Ratregion
5500103UniSTS:23677925510101196123101196378Ratregion
5500863AFM196xf61162109378183893783000Ratregion
5500839D17S1990278109172468291724960Ratregion
5501245PMC165604P1010103007528103008366Ratregion
5501393Mif403109419212294192525Ratregion
5504736PMC86057P126810103036286103036632Ratregion
5504793UniSTS:27563574410102052885102053630Ratregion
5506212Cacng41461109268658992688050Ratregion
Position Markers

Flank 1: (Gh1)
Rat AssemblyChrPosition (strand)Source
GRCr81091,727,883 - 91,729,860 (-)NCBI
mRatBN7.21091,228,102 - 91,230,079 (-)NCBI
mRatBN7.2 Ensembl1091,228,103 - 91,230,078 (-)Ensembl
UTH_Rnor_SHR_Utx1096,282,748 - 96,284,726 (-)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.01095,745,913 - 95,747,891 (-)NCBI
UTH_Rnor_WKY_Bbb_1.01091,156,493 - 91,158,471 (-)NCBI
Rnor_6.01094,486,204 - 94,488,181 (-)NCBI
Rnor_6.0 Ensembl1094,486,205 - 94,488,180 (-)Ensembl
Rnor_5.01094,237,414 - 94,239,391 (-)NCBI
RGSC_v3.41095,692,240 - 95,694,117 (-)NCBI
RGSC_v3.11095,708,476 - 95,710,261 (-)NCBI
Celera1089,903,834 - 89,905,811 (-)NCBI
Cytogenetic Map10q32.1NCBI
Flank 2: (D10Arb22)
Rat AssemblyChrPosition (strand)Source
mRatBN7.210104,060,133 - 104,060,283 (+)MAPPER
Rnor_6.010107,857,524 - 107,857,673NCBI
Rnor_5.010107,484,612 - 107,484,761UniSTS
Celera10102,615,292 - 102,615,441UniSTS
Cytogenetic Map10q32.3UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106674365598003205Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107255241693995749Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107437208494965338Rat
10450495Bp383Blood pressure QTL 3830.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608594965338Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)107877551698279596Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108051528791230079Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1080515287101325465Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
4889948Bss91Bone structure and strength QTL 914tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)108256485692369470Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
12880055Am11Aortic mass QTL 110.004aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)108400727295933025Rat
2301398Kidm38Kidney mass QTL 380.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)108400727295933025Rat
2306792Ean4Experimental allergic neuritis QTL 44nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)108402232193995963Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1085565469103884409Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087055121107211142Rat
2313856Bp342Blood pressure QTL 3424.40.0001life span trait (VT:0005372)age at time of death (CMO:0001193)108730761796121100Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087307617107211142Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1088539139107211142Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1090404397107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1090627439107057807Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090627439107211142Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091228102104060283Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1092238497101012337Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
631558Bp137Blood pressure QTL 1370.013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)109472486096836268Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
1576307Cia28Collagen induced arthritis QTL 28joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096120911104060283Rat
1576313Pia25Pristane induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096120911104060283Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1096703043107057807Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1096703043107057807Rat
631539Oia6Oil induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1097010147104670812Rat


Related Rat Strains
The following Strains have been annotated to Cia5
DA.F344(Cia5)    


Additional Information

Database Acc Id Source(s)
NCBI Gene Cia5


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Cia5  Collagen induced arthritis QTL 5    Type II Collagen induced arthritis QTL 5  Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_gene whole genome analysis using PGMapper revealed Map3k14, Ace, Stat3, Socs3, Tbx21 as RA associated genes and Ace as RA associated polymorphism either in coding or regulatory region 2300074
qtl_general DA.F344-(D10Arb20-D10Arb22) a congenic strain carrying this locus, develops less severe collagen-induced arthritis than the parental DA rats. 631168
qtl_general regulates the severity of collagen-induced arthritis 631168