Gene: Cracdl (CRACD like) Rattus norvegicus
Analyze
Symbol:
Cracdl
Name:
CRACD like
RGD ID:
1310819
Description:
Orthologous to human CRACDL (CRACD like); INTERACTS WITH (+)-schisandrin B; 2,2',5,5'-tetrachlorobiphenyl; bisphenol A.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
LOC301351; RGD1310819; similar to putative protein (5S487); uncharacterized protein KIAA1211-like homolog
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
CRACDL (CRACD like)
HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):
Cracdl (capping protein inhibiting regulator of actin like)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Cracdl (CRACD like)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
CRACDL (CRACD like)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
CRACDL (CRACD like)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Cracdl (CRACD like)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
CRACDL (CRACD like)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
CRACDL (CRACD like)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Cracdl (CRACD like)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Other homologs 2
Homo sapiens (human):
TSPAN4 (tetraspanin 4)
HGNC
OMA
Alliance orthologs 3
Mus musculus (house mouse):
Cracdl (capping protein inhibiting regulator of actin like)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Homo sapiens (human):
CRACDL (CRACD like)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
si:ch211-121j5.4
Alliance
DIOPT (OrthoFinder|OrthoInspector|PANTHER)
Danio rerio (zebrafish):
si:ch211-149l1.2
Alliance
DIOPT (Hieranoid|OrthoFinder|OrthoInspector|PANTHER)
Latest Assembly:
mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 9 47,323,785 - 47,446,612 (-) NCBI GRCr8 mRatBN7.2 9 39,834,321 - 39,950,763 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 9 39,834,833 - 39,951,086 (-) Ensembl mRatBN7.2 Ensembl Rnor_6.0 9 44,194,348 - 44,309,816 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 9 44,194,325 - 44,237,117 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 9 43,895,614 - 44,009,422 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 9 36,545,857 - 36,585,543 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 9 36,546,870 - 36,582,552 (-) NCBI Celera 9 37,588,547 - 37,704,315 (-) NCBI Celera Cytogenetic Map 9 q21 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Genomics
Comparative Map Data
Cracdl (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 9 47,323,785 - 47,446,612 (-) NCBI GRCr8 mRatBN7.2 9 39,834,321 - 39,950,763 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 9 39,834,833 - 39,951,086 (-) Ensembl mRatBN7.2 Ensembl Rnor_6.0 9 44,194,348 - 44,309,816 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 9 44,194,325 - 44,237,117 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 9 43,895,614 - 44,009,422 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 9 36,545,857 - 36,585,543 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 9 36,546,870 - 36,582,552 (-) NCBI Celera 9 37,588,547 - 37,704,315 (-) NCBI Celera Cytogenetic Map 9 q21 NCBI
CRACDL (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 2 98,793,846 - 98,936,225 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 2 98,793,846 - 98,936,259 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 2 99,410,309 - 99,552,688 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 2 98,776,741 - 98,919,116 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 2 93,615,445 - 93,757,699 (-) NCBI Celera Cytogenetic Map 2 q11.2 NCBI HuRef 2 93,175,937 - 93,318,619 (-) NCBI HuRef CHM1_1 2 99,414,638 - 99,557,436 (-) NCBI CHM1_1 T2T-CHM13v2.0 2 99,252,281 - 99,394,756 (-) NCBI T2T-CHM13v2.0
Cracdl (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 1 37,650,758 - 37,758,905 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 1 37,650,758 - 37,759,166 (-) Ensembl GRCm39 Ensembl GRCm38 1 37,611,676 - 37,720,089 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 1 37,611,677 - 37,720,085 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 1 37,668,521 - 37,776,656 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 1 37,556,221 - 37,667,753 (-) NCBI MGSCv36 mm8 Celera 1 37,393,635 - 37,426,520 (-) NCBI Celera Cytogenetic Map 1 B NCBI cM Map 1 15.57 NCBI
Cracdl (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955470 5,227,379 - 5,285,021 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955470 5,227,759 - 5,343,535 (-) NCBI ChiLan1.0 ChiLan1.0
CRACDL (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 12 29,501,782 - 29,643,254 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 2A 29,504,544 - 29,646,016 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 2A 100,369,080 - 100,510,589 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 2A 99,721,777 - 99,795,367 (-) NCBI panpan1.1 PanPan1.1 panPan2
CRACDL (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 10 43,684,912 - 43,867,373 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 10 43,691,154 - 43,865,683 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 10 43,655,968 - 43,790,250 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 10 44,563,475 - 44,740,240 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 10 44,551,229 - 44,739,542 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 10 44,271,687 - 44,451,211 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 10 44,601,040 - 44,741,956 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 10 44,741,407 - 44,917,506 (+) NCBI UU_Cfam_GSD_1.0
Cracdl (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
CRACDL (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 3 55,351,099 - 55,489,119 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 3 55,350,490 - 55,489,126 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 3 57,958,964 - 58,040,761 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
CRACDL (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 14 2,520,454 - 2,665,348 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 14 2,519,920 - 2,597,409 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666041 170,050,550 - 170,250,521 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Cracdl (Heterocephalus glaber - naked mole-rat)
miRNA Target Status
Predicted Target Of
Count of predictions: 198 Count of miRNA genes: 124 Interacting mature miRNAs: 137 Transcripts: ENSRNOT00000051376, ENSRNOT00000065692, ENSRNOT00000068496 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction