CRACDL (CRACD like) - Rat Genome Database

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Gene: CRACDL (CRACD like) Chlorocebus sabaeus
Analyze
Symbol: CRACDL
Name: CRACD like
RGD ID: 18347218
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: KIAA1211 like; KIAA1211L; uncharacterized protein KIAA1211-like homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,520,454 - 2,665,348 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,519,920 - 2,597,409 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041170,050,550 - 170,250,521 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
CRACDL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,520,454 - 2,665,348 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,519,920 - 2,597,409 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041170,050,550 - 170,250,521 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CRACDL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38298,793,846 - 98,936,225 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl298,793,846 - 98,936,259 (-)EnsemblGRCh38hg38GRCh38
GRCh37299,410,309 - 99,552,688 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36298,776,741 - 98,919,116 (-)NCBINCBI36Build 36hg18NCBI36
Celera293,615,445 - 93,757,699 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef293,175,937 - 93,318,619 (-)NCBIHuRef
CHM1_1299,414,638 - 99,557,436 (-)NCBICHM1_1
T2T-CHM13v2.0299,252,281 - 99,394,756 (-)NCBIT2T-CHM13v2.0
Cracdl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,650,758 - 37,758,905 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,650,758 - 37,759,166 (-)EnsemblGRCm39 Ensembl
GRCm38137,611,676 - 37,720,089 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,611,677 - 37,720,085 (-)EnsemblGRCm38mm10GRCm38
MGSCv37137,668,521 - 37,776,656 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36137,556,221 - 37,667,753 (-)NCBIMGSCv36mm8
Celera137,393,635 - 37,426,520 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.57NCBI
Cracdl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8947,323,785 - 47,446,612 (-)NCBIGRCr8
mRatBN7.2939,834,321 - 39,950,763 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl939,834,833 - 39,951,086 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0944,194,348 - 44,309,816 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl944,194,325 - 44,237,117 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0943,895,614 - 44,009,422 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4936,545,857 - 36,585,543 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1936,546,870 - 36,582,552 (-)NCBI
Celera937,588,547 - 37,704,315 (-)NCBICelera
Cytogenetic Map9q21NCBI
Cracdl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554705,227,379 - 5,285,021 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554705,227,759 - 5,343,535 (-)NCBIChiLan1.0ChiLan1.0
CRACDL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21229,501,782 - 29,643,254 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A29,504,544 - 29,646,016 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,369,080 - 100,510,589 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A99,721,777 - 99,795,367 (-)NCBIpanpan1.1PanPan1.1panPan2
CRACDL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11043,684,912 - 43,867,373 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1043,691,154 - 43,865,683 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1043,655,968 - 43,790,250 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01044,563,475 - 44,740,240 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1044,551,229 - 44,739,542 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11044,271,687 - 44,451,211 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01044,601,040 - 44,741,956 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01044,741,407 - 44,917,506 (+)NCBIUU_Cfam_GSD_1.0
Cracdl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629284,617,052 - 84,668,358 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367441,869,996 - 2,001,383 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRACDL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl355,351,099 - 55,489,119 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1355,350,490 - 55,489,126 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2357,958,964 - 58,040,761 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cracdl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247493,855,728 - 3,978,782 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247493,855,949 - 3,983,786 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 1 41
Low 29 14 19
Below cutoff 6 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000015324   ⟹   ENSCSAP00000013268
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl142,519,920 - 2,597,409 (-)Ensembl
RefSeq Acc Id: XM_038004182   ⟹   XP_037860110
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041170,050,550 - 170,127,920 (-)NCBI
RefSeq Acc Id: XM_038004183   ⟹   XP_037860111
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041170,050,550 - 170,127,472 (-)NCBI
RefSeq Acc Id: XM_038004184   ⟹   XP_037860112
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041170,050,550 - 170,250,521 (-)NCBI
RefSeq Acc Id: XM_038004185   ⟹   XP_037860113
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041170,050,550 - 170,224,547 (-)NCBI
RefSeq Acc Id: XM_038004186   ⟹   XP_037860114
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041170,050,550 - 170,130,305 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037860110 (Get FASTA)   NCBI Sequence Viewer  
  XP_037860111 (Get FASTA)   NCBI Sequence Viewer  
  XP_037860112 (Get FASTA)   NCBI Sequence Viewer  
  XP_037860113 (Get FASTA)   NCBI Sequence Viewer  
  XP_037860114 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013268.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000013268   ⟸   ENSCSAT00000015324
RefSeq Acc Id: XP_037860112   ⟸   XM_038004184
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RXC9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037860113   ⟸   XM_038004185
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RXC9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037860114   ⟸   XM_038004186
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RXC9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037860110   ⟸   XM_038004182
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RXC9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037860111   ⟸   XM_038004183
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RXC9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017230 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015324.1 UniProtKB/TrEMBL
InterPro DUF4592 UniProtKB/TrEMBL
  KIAA1211L UniProtKB/TrEMBL
NCBI Gene KIAA1211L ENTREZGENE
PANTHER CRACD-LIKE PROTEIN UniProtKB/TrEMBL
  PTHR47743 UniProtKB/TrEMBL
Pfam DUF4592 UniProtKB/TrEMBL
UniProt A0A0D9RXC9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-01-28 CRACDL  CRACD like  KIAA1211L  KIAA1211 like  Symbol and/or name change 5135510 APPROVED