Klhl25 (kelch-like family member 25)

Gene: Klhl25 (kelch-like family member 25) Rattus norvegicus

Analyze

Symbol:

Klhl25

Name:

kelch-like family member 25

RGD ID:

1310815

Description:

Predicted to enable ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in several processes, including positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation; regulation of fatty acid metabolic process; and ubiquitin-dependent protein catabolic process. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human KLHL25 (kelch like family member 25); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ectoderm-neural cortex protein 2; ENC-2; kelch-like 25; kelch-like 25 (Drosophila); kelch-like protein 25; LOC293023; MGC116251; RGD1310815; similar to hypothetical protein FLJ12587

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KLHL25 (kelch like family member 25)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Klhl25 (kelch-like 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Klhl25 (kelch like family member 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KLHL25 (kelch like family member 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KLHL25 (kelch like family member 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Klhl25 (kelch like family member 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KLHL25 (kelch like family member 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KLHL25 (kelch like family member 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Klhl25 (kelch like family member 25)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	METTL22 (methyltransferase 22, Kin17 lysine)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Klhl25 (kelch-like 25)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	KLHL25 (kelch like family member 25)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	enc2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	klhl25	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	139,134,655 - 139,159,898 (+)	NCBI		GRCr8
mRatBN7.2	1	129,724,894 - 129,750,142 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	129,722,026 - 129,750,227 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	137,630,051 - 137,655,206 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	144,800,323 - 144,825,478 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	137,689,819 - 137,714,976 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	137,333,880 - 137,359,107 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	137,333,881 - 137,359,072 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	138,322,710 - 138,355,032 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	131,540,949 - 131,566,141 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	131,636,985 - 131,638,938 (+)	NCBI
Celera	1	121,829,642 - 121,854,834 (+)	NCBI		Celera
Cytogenetic Map	1	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colorectal cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

carbon nanotube (ISO)

cefaloridine (EXP)

CGP 52608 (ISO)

chlordecone (ISO)

cisplatin (ISO)

dibutyl phthalate (ISO)

ethanol (ISO)

flutamide (EXP)

furan (ISO)

gentamycin (EXP)

glafenine (EXP)

Licochalcone B (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

thioacetamide (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

urethane (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of fatty acid biosynthetic process (ISO)

positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (ISO,ISS)

positive regulation of fatty acid oxidation (ISO,ISS)

protein ubiquitination (IEA,ISO,ISS)

regulation of translational initiation (ISO,ISS)

ubiquitin-dependent protein catabolic process (IBA,ISO,ISS)

Cellular Component

Cul3-RING ubiquitin ligase complex (IBA,ISO,ISS)

cytoplasm (IBA,ISO)

Molecular Function

ubiquitin-like ligase-substrate adaptor activity (ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:22578813

Genomics

Comparative Map Data

Klhl25
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	139,134,655 - 139,159,898 (+)	NCBI		GRCr8
mRatBN7.2	1	129,724,894 - 129,750,142 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	129,722,026 - 129,750,227 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	137,630,051 - 137,655,206 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	144,800,323 - 144,825,478 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	137,689,819 - 137,714,976 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	137,333,880 - 137,359,107 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	137,333,881 - 137,359,072 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	138,322,710 - 138,355,032 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	131,540,949 - 131,566,141 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	131,636,985 - 131,638,938 (+)	NCBI
Celera	1	121,829,642 - 121,854,834 (+)	NCBI		Celera
Cytogenetic Map	1	q31	NCBI

KLHL25
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	85,759,326 - 85,794,925 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	85,759,326 - 85,794,925 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	86,302,557 - 86,338,156 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	84,103,561 - 84,139,193 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	15	62,702,507 - 62,738,117 (-)	NCBI		Celera
Cytogenetic Map	15	q25.3	NCBI
HuRef	15	62,365,689 - 62,401,305 (-)	NCBI		HuRef
CHM1_1	15	86,144,000 - 86,179,590 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	83,511,457 - 83,547,035 (-)	NCBI		T2T-CHM13v2.0

Klhl25
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	75,498,086 - 75,523,881 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	75,498,058 - 75,523,879 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	75,848,338 - 75,874,133 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	75,848,310 - 75,874,131 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	82,993,224 - 83,019,016 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	75,721,910 - 75,741,004 (+)	NCBI		MGSCv36	mm8
Celera	7	73,298,548 - 73,327,582 (+)	NCBI		Celera
Cytogenetic Map	7	D1	NCBI
cM Map	7	43.81	NCBI

Klhl25
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955416	18,965,966 - 18,991,099 (+)	NCBI	ChiLan1.0	ChiLan1.0

KLHL25
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	75,302,695 - 75,340,844 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	79,007,350 - 79,045,503 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	64,448,130 - 64,486,254 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	83,661,360 - 83,671,886 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	83,670,090 - 83,671,859 (-)	Ensembl	panpan1.1		panPan2

KLHL25
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	49,339,576 - 49,375,473 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	49,348,982 - 49,351,663 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	51,978,492 - 52,014,269 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	49,760,167 - 49,795,982 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	49,760,169 - 49,795,968 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	49,258,177 - 49,293,852 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	49,486,578 - 49,522,306 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	49,832,848 - 49,868,610 (-)	NCBI		UU_Cfam_GSD_1.0

Klhl25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	134,301,314 - 134,334,028 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936483	12,000,514 - 12,009,705 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936483	12,001,111 - 12,033,158 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KLHL25
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	88,262,385 - 88,264,691 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	88,249,009 - 88,291,958 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	94,609,175 - 94,657,162 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KLHL25
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	29	4,376,292 - 4,412,778 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	29	4,385,011 - 4,386,780 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	42,604,595 - 42,640,945 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Klhl25
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624768	13,110,912 - 13,121,206 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624768	13,112,589 - 13,134,855 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Klhl25
138 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	226
Count of miRNA genes:	150
Interacting mature miRNAs:	181
Transcripts:	ENSRNOT00000014553
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303591	Gluco41	Glucose level QTL 41	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	102168504	147168504	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
631570	Bp94	Blood pressure QTL 94		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123479780	142990467	Rat
631654	Bp107	Blood pressure QTL 107			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	125611501	170611501	Rat
2317833	Alcrsp19	Alcohol response QTL 19	12.4	0.001	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	1	100979852	145979852	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94642644	214537671	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	100357752	183970443	Rat
7794788	Mcs32	Mammary carcinoma susceptibility QTL 32	2.61		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	1	115540693	238914717	Rat
9685799	Bp375	Blood pressure QTL 375			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	125611501	170611501	Rat
9590300	Scort16	Serum corticosterone level QTL 16	4.39	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	103111621	148111621	Rat
9685802	Bp376	Blood pressure QTL 376			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	126540680	171540680	Rat
631496	Bp97	Blood pressure QTL 97	3.08		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	106047847	151047847	Rat
631544	Bp84	Blood pressure QTL 84	5.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350408	181759564	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118608292	241799120	Rat
8694370	Bw154	Body weight QTL 154	8.91	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	1	103111621	148111621	Rat
1300158	Bp173	Blood pressure QTL 173	3.48		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	1	115540693	185145286	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	94494440	181830018	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94494440	172949803	Rat
1300153	Bp171	Blood pressure QTL 171	3.37		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	90664883	143200202	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	102813953	201278233	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	102813953	218753816	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	102813953	201278233	Rat
1354623	Rf46	Renal function QTL 46	3.8		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	1	102813953	151162766	Rat
1358189	Cstrr1	Cold stress response QTL 1		0.0001	catecholamine amount (VT:0010543)	urine norepinephrine level (CMO:0001629)	1	123350408	182418476	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
1641895	Bp298	Blood pressure QTL 298			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	123350408	182418476	Rat
1641897	Alcrsp1	Alcohol response QTL 1			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	1	100979852	145979852	Rat
1598850	Bp297	Blood pressure QTL 297	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	121006655	166006655	Rat
1598866	Bp287	Blood pressure QTL 287	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	121006655	166006655	Rat
1578770	Stresp23	Stress response QTL 23			kidney sympathetic nerve activity (VT:0004050)	stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)	1	123350408	182418476	Rat
61346	Rf2	Renal disease susceptibility QTL 2	3.7		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	1	99267916	144267916	Rat
61399	Tcat1	Tongue tumor resistance QTL 1	3.3		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)	1	99267916	144267916	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	94494440	198324465	Rat
2293140	Bp313	Blood pressure QTL 313			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	121833674	166833674	Rat
2293142	Bp314	Blood pressure QTL 314			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	92184926	137184926	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
631199	Cm23	Cardiac mass QTL 23	4.6	0.0004	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	115585465	172949803	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118944897	199050459	Rat
61442	Strs1	Sensitivity to stroke QTL 1	7.4		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	1	121767634	166767634	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	90508614	173018436	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
2313060	Bss71	Bone structure and strength QTL 71	2.6	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	1	118944747	163944747	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	90508614	180359386	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	94494440	198211706	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	87580395	150700247	Rat
634348	Bp138	Blood pressure QTL 138			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	125611501	168883176	Rat
61370	Mcs3	Mammary carcinoma susceptibility QTL 3	2.15		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	102268556	147268556	Rat
631549	Bp89	Blood pressure QTL 89	5.7		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350581	201284552	Rat
724567	Tcas6	Tongue tumor susceptibility QTL 6	6.85		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	1	92948896	144267916	Rat

Markers in Region

RH138666

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	129,749,880 - 129,750,031 (-)	MAPPER	mRatBN7.2
mRatBN7.2	1	129,629,953 - 129,630,104 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	137,333,991 - 137,334,141	NCBI	Rnor6.0
Rnor_6.0	1	137,325,570 - 137,325,720	NCBI	Rnor6.0
Rnor_5.0	1	138,329,910 - 138,330,060	UniSTS	Rnor5.0
Rnor_5.0	1	138,322,821 - 138,322,971	UniSTS	Rnor5.0
RGSC_v3.4	1	131,370,820 - 131,370,970	UniSTS	RGSC3.4
RGSC_v3.4	1	131,565,880 - 131,566,030	UniSTS	RGSC3.4
Celera	1	121,854,573 - 121,854,723	UniSTS
Celera	1	121,737,771 - 121,737,921	UniSTS
RH 3.4 Map	1	1032.0	UniSTS
Cytogenetic Map	1	q31	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			31	25	8	25			59	35	34
Low	3	43	26	16	11	16	8	11	15		7	11	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001039006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC099111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000014553 ⟹ ENSRNOP00000014553

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	129,724,856 - 129,750,227 (+)	Ensembl
Rnor_6.0 Ensembl	1	137,333,881 - 137,359,072 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097328 ⟹ ENSRNOP00000089869

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	129,730,573 - 129,750,227 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000111640 ⟹ ENSRNOP00000097538

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	129,722,026 - 129,750,227 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112874 ⟹ ENSRNOP00000090402

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	129,731,036 - 129,750,227 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112989 ⟹ ENSRNOP00000091951

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	129,735,457 - 129,746,366 (+)	Ensembl

RefSeq Acc Id:

NM_001039006 ⟹ NP_001034095

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	139,134,706 - 139,159,898 (+)	NCBI
mRatBN7.2	1	129,724,950 - 129,750,142 (+)	NCBI
Rnor_6.0	1	137,333,880 - 137,359,072 (-)	NCBI
Rnor_5.0	1	138,322,710 - 138,355,032 (-)	NCBI
RGSC_v3.4	1	131,540,949 - 131,566,141 (+)	RGD
Celera	1	121,829,642 - 121,854,834 (+)	RGD

Sequence:

show sequence

TGCGGTTCGGCTACGGGATCGCGGCCGGGACTGGAGAGCCGGCCGGGGACGGCGGCAGCGGCGG
GGACTGCGGAGCCTGTGGGGCCCCACGGTGGATACACAATGTCAGTCAGCGTTCACGAGACCCG
CAAGTCGCGGAGTAGCACAGGCTCCATGAACATCTCGGTCTTCCACAAGGCCTCGCACCCTGAC
TGTGTGCTGGCCCACCTCAACACTCTGCGCAAGCACTGCATGTTCACCGACGTCACTCTCTGGG
CTGGTGACCGAGCCTTTCCTTGCCACCGTGCAGTGCTGGCTGCCTCCAGCCGATACTTTGAGGC
CATGTTCAGCCATGGCCTTCGGGAAAGCCGGGATGATACGGTCAACTTCCAGGACAACCTGCAC
CCTGAGGTGCTGGAGCTGCTCCTGGACTTCGCCTACTCCTCTCGCATCGTCATCAATGAGGAGA
ACGCAGAGTCGCTGCTGGAGGCTGGTGACATGTTGCAGTTCCATGACGTCCGGGATGCAGCTGC
CGAGTTCCTGGAGAAGAATCTTTCCCCCTCCAACTGCCTTGGCATGATGGTGCTGTCTGATGCT
CACCAGTGCCGGCGGCTCTATGAGTTCTCATGCCGAATGTCCCTGGTACACTTTGAGACGGTGC
GGCAGAGTGAGGACTTCAACAGTCTCTCTAGGGACACACTGTTGGACCTCATCTCCAGAGACGA
GCTGGAGACTGAGGATGAGCGCGTGGTCTTTGAGGCCATCCTGCAGTGGGTGAAGCATGACCTA
GAGCAGAGGAAGGTCCACCTGCCACTGCTCCTGCGCAATGTGCGACTGGCCCTGCTACCCTCAG
ACTGTCTGAAGAAAGCCGTCTCTGGAGAGGCCCTCCTCATGGCGGATGAGTGCACCAAACTCAT
CATAGATGAGGCCTTCCGCTGCAAGACCAAGATCTTGCTGAACGATGGTGTGGTCACCAGTCCC
TTTGCCCGGCCTCGCAAGGCAGGTCACACATTGCTCATCCTGGGAGGCCAGACCTTCATGTGTG
ACAAGATCTACCAAGTGGACCACAAAGCCAAGGAGATTATCCCCAAGGCTGATCTGCCGAGCCC
TCGGAAGGAGTTCAGCGCTTCAGCGATTGGTTGCAAGGTCTACGTGACTGGAGGCAGGGGCTCT
GAGAATGGGGTCTCTAAGGATGTCTGGGTGTATGACACTGTCCATGAGGAATGGTCTAAGGCAG
CTCCCATGCTGATTGCCCGCTTTGGCCATGGCTCAGCTGAGCTGGAAAACTGTCTCTATGTGGT
AGGGGGGCATACATCCCTAGCAGGCATTTTCCCTGCCTCTCCTTCTGTCTCCCTGAAACAAGTT
GAGAAATATGACCCTGGGGATAATAAGTGGACTATGGTGGCCCCAATGAGAGACGGTGTCAGCA
ATGCTGCTGTGGTGAGTGCCAAGCTGAAACTCTTTGTGTTTGGAGGGACCAGCATCCACCGGGA
CATGGTGTCCAAAGTCCAGTGTTTTGACCCCTCGGACAACCGGTGGACAATCAAGGCAGAATGT
CCCCAGCCTTGGCGATACACAGCAGCTGCTGTTCTGGGCAGCCAGATTTTCATCATGGGAGGTG
ACACAGAGTACACAGCAGCTTCAGCATATCGCTTCGACTGTGAGACCAACCAGTGGACGCGGAT
TGGGGACATGACAGCCAAACGCATGTCCTGTCATGCTGTGGCTTCAGGCAACAAGCTGTATGTG
GTTGGAGGCTACTTTGGGACCCAGAGGTGTAAGACCCTGGACTGCTATGACCCTACTTCAGACA
CATGGAACTGCATCACCAGCGTGCCCTACTCTCTCATTCCCACGGCCTTTGTTAGCACCTGGAA
GCATCTGCCTGCATGAAAGGCAGCTTCAGAGCCCAGCCAGCCTGTGTGCTTCTTCCTGCCTGGG
CCAGAAGCTGACAGCACCAGCTCCCGGCAGCAGCAGCTCCAGCAGGCCTTACCTCTAGGCATCG
CAATGAAGTTCTCCAGCATCACCTGTACTCGGTTCCCAAAGCTGCCAGAAGCTTGTGTGGAGAG
AAGCGTCCAGAGGCGTGGGCTGTCACCAGCAACCCAGGCCTGACAATGGCTAACAGGGAGGAGC
AGGGGTCCCTTGGCCCCAGCAGCACAGCCTTTGACTGTAGGGCTGTCTGTGGGAGCTGGGAATG
GTGCTCCAGTGTCCTGGACATCGGAAGCATAGTCCAACTGAAGACATTTTATAAGGACAGAAGC
CCCAGGGTCACCCAGCCTCAGGTGGGACCTACAGGCTCCATCAGCAGATGATACCAGACTGCTA
CGGCCAAGAGGAGATCATCCGTGTGCCCTCTGCCAAGAATGAGCTCACCCCCCAAGAGGTGACT
TTCCGGAAGCTTCCTTAGATGTAGGGCAGATGCCTGTGACCAGTCAGACACTGCTTAGGGTTCC
CCAGCAGGACTCTAGGCCCCTGAGAGCTGGTAGGGGCCTGATGCCTGCACTTCTCAGAGGCACA
GGACAGCAGCAGGTTATACCTCCCAATGTACTGGGCTCCTTTGTGGAGACCCTGTCCTGTGTCC
TGTTCCCTAAGAGGTCAGACATGAGTTGAATGGCAGGGGGACCCCACAGTCACGGCAGTTTGCA
GGGAGGTTGGATTTCTGTCATTGTGGGCCTAGCATTAAGGCTCCCATCACACCTGCTATCCTCT
TCAGCCCCAGCTGACAGCCTGAGTCCTGCCTGTGTGTTCCTTGAGCTCAGATAGACGGATCCGA
AGAAACTTCCCGAATGTGTTTCTCAAGGGTTCCCCCCCCAGTGTCCCCTGCATTAGGTTTGCAG
AGTCACCATCTTCTGATGCCAGTGTGGACTCCTCGCTCACCCCTGTTTGTCTAGTGCTCTTGGT
TTCCAGTCCAGGATGGGGAGTGTTCCATAGTTGGTGGCTTCCCATCGCTGCATGAGGATGGAGC
ATCCAGAGTGGGTTCTGCTCTTGACAGAAGTGGAGCCACAGTACAGACCGGTTTGGCCAGCCAT
CAAGCTCCTGGAAGCTCAGCCTGGTACTTAGCTGAGTGACTTAGTCACACACTGCTCCCACCTG
AGGTCCAGCTGGTTTTCCATTCCACCTCAGGGTCAGCCTTGCTGGAGAATTGCAGGCTCTTGGC
CCATGGACTATGCCATCAGGAGCAATCAGTCTGCACAGCACAGAGGACCTAGCCCTGGTGCTTG
CCTGAGCATGGGTGTTACTTTTATTAGTTTCTAACTTAATAAAAGTGAGGAAGTTCTTGCCCTC
CTTTGGGTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006229380 ⟹ XP_006229442

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	139,145,157 - 139,159,898 (+)	NCBI
mRatBN7.2	1	129,735,417 - 129,750,142 (+)	NCBI
Rnor_6.0	1	137,333,880 - 137,352,882 (-)	NCBI
Rnor_5.0	1	138,322,710 - 138,355,032 (-)	NCBI

Sequence:

show sequence

GTGTCTGAGTGGGGGCCCTTCTAAACGGTATCTTAGTGACAGGTGGCTTTGCCTAGGTGAGGTG
CAGGTGGCTTATCGTGTGTGGTATATGTTACCGTGAGGTTCTTTGTCTGTTTTCCTGTGGCAAA
GAAGCCAAAGATGTACCAAATGGGCACCTGTCCTTGACTGGGAGAGAGAGAATGTGGAGACTGG
AGACTTGAGGAGGAGAGGTAGATCTGAGACTGTTGAAAGCCAGGCTCTGCACATGGTCTCCGGA
CAGACCTTGTGACTGAGGAGTCAGGATGGCAAGGCTGTATGAACAGCCTGGGTACCTGGTGGGG
TGCATCTTTGTTGGGACTCAGCCAGGGCTGGCACATTAGGCCAGGCTCTCCAGGCCTTCCCTGG
TGCCTGTGTTCCCTTCCTTCAGAAGCAGCACCCAAAGCATCCAGTTTGGCTGTGACTGCTGCCC
TAGAACCTTATAATTCTGCCCCAGAGTGGGTACCCATTAGGACCACCAATCTGACCTAATAGGA
ACAGACATTAGATAAAGAGGATGGGCAGATGTCAACAGAGGGGACAGGGGAGCCTCCAAAGAGC
TTTGGTGGGAGGCCTCCTGAAGTGTCTTTGTTATGGTTCCCAAGGGGAGGGGCTGAAGGGCATT
TCCACAGTTACAGACCCCTCCCCAGTCTGAGCGTTTGGAAAGGGACAAGGGAGGGTGGCACTCT
CCCAAGCAGCTTATCAGCGGGCTCCGGCCTGCTGTCATCCCAGGCTTTGTGGACAGGCTTGGCC
ACAAGTGGTGGGCTGGGTCGCCAGCCTTCCTTTCGGGCAGAAGCACCCATTGAGGTATCTCTCT
GGGTTGCAGGAAGCCATTTTTATGCTTGCTATTTTTATCAACCCAACTAGGACTTTATGTTGAA
AGCTCTAATTACAAGCAAAATGTCAGGGTTGGTCTGGCAGTGAGTCTGAGGCAGGAGACATTGC
ACACCAGTCATTTGATGTGTAAAGCAAGGTACATTTGTTCATGGACATAAGGGGGCTTGCTTAC
TGACTTCTTGTGTCTACAGTTTGTTTCCCATTTTTTAGACTGGGTCTTAAGCAGCCCAGGCTGG
TCTCACACTATCATGCTTTGTGGCAAGCATGACCTTAAACATCTGATCATCCTGCCCTCACCCC
CACTAGGTGATGGGATTACAGGTGTGTGACCCCATTTCCTGTTTATGCAGCTCTGCTGATCAAA
CCCTGAGTTTTGTGTATGTTAAACAAACACTTCCAACTGAGCTGCAAGCCAGCCTGGCAATCTT
CTTTGAAGTAACAAAGAGGCCTTTACTGAATTCTTCTAGATAATTGCACATGAAGCCAATTGGC
TGGCCATACAGCTGTGGAGGGAGCCTAGGGGACTGGAGTTGGAGCTTTATTAAAATTACCAAGA
CCCCTCTTCATGCTACCTACTCTGTGAAGTGTGAGGGACAGAGATGATAAGGACTGGACTGTTA
AACCTAGTGGATTGTCCTTTGGACAAATACCTGATCTGCTTTTACTAGACATGGTTTCAGTCTA
GAGGCCCCCTAGGGCCTACAAGGTAGCCTCCTCTGTCTTCAGCTTCACTTTCTGTAGCATCAAT
TATCCAAGGTCAACTGGTTTGAAAATACCAAATGGAAAAGTAAGTGTTGGACAAGTTTTACTGG
GTGTGGTGACCCAGGCTGGCTTCAAACTAGCGATCTTCCTGCCTCAGTCTCCTGGGTTATAGGG
TTACAGGAAGAGACCACTATGGCCAAGCTGGTCTCTCACCATGCCTAATTTATAAGATTTGGGA
TCAAACTCAAGGCCTTAAACTTGTTCTGCAAGCAGTTTACTGATGGAACCTTCTGTCTTCTCAG
CGTATAAAACTGCCTTTGCTAAGCTCTTTGAGGTCAAGTCCACCCAGTTTCTTTCCTAAGGGCA
AATGTGGACATGAGGACATGTGTGCGTGTGGGTTCCTGTGAGGTGAGAGCTTGACCTTGGGTGT
CAAAGAGGCACTGTTTTTGAAATACGGTCTCACAGTGGTCCGGGACATAACAAATAAGCTAGGC
TAAGCGGCCATTGAGTCCCAAGTTCTACCTGTCTCTGCCTCACTAATGCTGAGAGTGCCCTCCC
GTACCTGGCTTCTCAATGTGGGTCTTGGGATGCAGCTCAGGCCCTCATGCTTGCATTGAGCACT
TCACCCAGTTGAGCCATCTCCTCGTCCCAGGGCAATCAGCCACTGCAGCTGTAACCCCCTTGTC
ATGTAGGGTTACCTCTCTACAGAATAAGACCACCAGTGGGGGTCAGGGGCTCTGTCTTAGAAGT
CTGCCTGCCCAAGGCTAAAGCTGCTGGTGAATGGATGAGGCTGACAGCAGTGATGGCAGCGGAC
TAAACCATTAGTGTGTCCCACTGCCTGGCTCTTGATGTGCTCCTGTTTAATTACAGGATAGGAG
CTCAAAGATAGTACATGTATTTAGTTACTGTTTCCCAGATGAGAAACCAGGCATCTTGGGCAGC
CAGGGATTCAGAGCTAGGCACACTCTTCACACAGTTCTTCTGTCAGGCTGCTTGAGGTTGGCAT
CCCCATTTGGACTTGTGGTTTATGGCCCACCATCCAGAGCAGTACTGGAGGTGGTTCTCCCCTA
GTTAGAACTGAAAATGACTTGTTTATGGATAAGGACTCACTCTTAGCTCAGGCTGTCCCTAAAC
TTACTATATAGCCCAGGCTAGCTCAGAATTAAGTGATTGGTTCTCTGCCTCTCAAGTATTGGGA
TTGTATGTGTGAGCCACCTGGCTTAAATGATTAAACATGGGGCCTGTAGAGGTGGCTCAGTGGT
TAAGGGCATTTGCTGCCCCTGCAAATGATCTGGATTGGGTTCCCAGCACCCACATGGCTGCTCA
TAACCGTCTGTAAACCCTAGTTCCAGGGAAGCTGATGCCCACGTGTGGCCACCAAGGCCCAGGC
AAGCAGCTGGCCCATAAACACACATTCAGGCAAAGCACTCATACACATAAAAATAATATAGTTT
TAAATGTAGGCATGCCACATACCAGTCACACCTCAAGGACTATGGCCAGCAGTGGGAGCTGCTG
TGCGGGTCTATGATAGGCGTCTGGACGTGTCCGTTCTTACTGCAGTGCCCAGTACTGACAGTGG
AACTTACTGAGCATCTAGCACATGCCGAGGAGACCCAGAATTCTGCCCTTGCAGCTGCAGACAG
AGTTAAGCGCAGTCTGCAGTCCTCTGCAGTAGACCATGGTGACCCTCAGGAGAAGGTCCCTGTG
CTCCAGCAGCACAAAGGCTGTGTTCTTGTAAGAGACAGACAGACGTCCCTCTTGCTATGGGTGC
AGGGCATAGTAAGTGTCTGGAAATGCTTGTTGAGTTGATTTTCTCAGGCTCTACTATGTATAAA
GGGTGCTGATCAACCAAGAAGCTGGGGTTGTGAGGCAGAGGAATTGTGGGGGAACTTGAGCTAG
AAGGGTGGGAAGGGAGGAAGCTGGGGTAGGCTGTAGATCTGGAGAGGAGGGAATGGGTTGAACA
AGACTTGAGCACCCAAATCCATTGAAGGCTTTTGAGCGGGAGAGGTTGACCATGCGAAAGTTTC
TGAGTGAGGGGCTGTTTATGGGCATCTGTGTATTTGTTATAAATATGCCAACATATGTAATTTG
AAGAGACCAGGAAATATCAGCTGGGATGCTCAAAGCTTGGCCCTGTACTTTGCTGAGGGAGGGA
GGCCTGTCATTTGGGAGGAGAGGGAGTTGATGCTGTGGTGAGAGAGACTTCTGACAGTGACAGA
GGAGCAATGGATCTGCTGGGCATTGGAGGGCACCTGAGGGATTCCTGCTGCCCAGTGACTGCAA
GGTGCTGTGGGCTGGGGTTGGGGAGGAAGAAAGTGAGTGTGGGCTGCAAGGCTCACAGTTCATG
GTGCTTGGGATGCAGGAGGTCCCAGGCTCAGCTGATCTTGAATACTGACTCCAGCCACGTCTTG
GATGTGTGCTGGATGTGTGCGTGTCCCCCAACACTTCCTTTCTGGAGTTCCTGTAGGTTCCAGA
GAAAGTGTGGTTAATGTGCAGGAGCTTTGCAAATCACTGTCAGAGTGAAGTTCCTTTGAGGGCC
CCCAGATCAAAAGATTCTTTTCACAGTAGTCCTGAGACATCGCCTGCCTTGCTTGCCTCCTCCG
GAGTGCACAAGGCCGGGAGCAGTGGTTCCCACGTGACCCACGCACCAGGTTACAAAACTCTGCT
GAGTAAAGGATCCATTCAAGGTGCAGGTTGGGAATGTGTACAGAGTACAAAAGTTCATTGATAT
GGGTCAGATTCCACACTTCAGTGGCCCATAAAGAAACCGCCACTGGTCAGGGAAGAGTGGCCGT
GGTTATCTGAAAAGGCTGTATCTGGGTGAGATTGGCCTTTCTTCATGTCCTGTAATCAGCACCA
CGTATCTTAGTAGATTGAAGGCTACGGTGGATACACAATGTCAGTCAGCGTTCACGAGACCCGC
AAGTCGCGGAGTAGCACAGGCTCCATGAACATCTCGGTCTTCCACAAGGCCTCGCACCCTGACT
GTGTGCTGGCCCACCTCAACACTCTGCGCAAGCACTGCATGTTCACCGACGTCACTCTCTGGGC
TGGTGACCGAGCCTTTCCTTGCCACCGTGCAGTGCTGGCTGCCTCCAGCCGATACTTTGAGGCC
ATGTTCAGCCATGGCCTTCGGGAAAGCCGGGATGATACGGTCAACTTCCAGGACAACCTGCACC
CTGAGGTGCTGGAGCTGCTCCTGGACTTCGCCTACTCCTCTCGCATCGTCATCAATGAGGAGAA
CGCAGAGTCGCTGCTGGAGGCTGGTGACATGTTGCAGTTCCATGACGTCCGGGATGCAGCTGCC
GAGTTCCTGGAGAAGAATCTTTCCCCCTCCAACTGCCTTGGCATGATGGTGCTGTCTGATGCTC
ACCAGTGCCGGCGGCTCTATGAGTTCTCATGCCGAATGTCCCTGGTACACTTTGAGACGGTGCG
GCAGAGTGAGGACTTCAACAGTCTCTCTAGGGACACACTGTTGGACCTCATCTCCAGAGACGAG
CTGGAGACTGAGGATGAGCGCGTGGTCTTTGAGGCCATCCTGCAGTGGGTGAAGCATGACCTAG
AGCAGAGGAAGGTCCACCTGCCACTGCTCCTGCGCAATGTGCGACTGGCCCTGCTACCCTCAGA
CTGTCTGAAGAAAGCCGTCTCTGGAGAGGCCCTCCTCATGGCGGATGAGTGCACCAAACTCATC
ATAGATGAGGCCTTCCGCTGCAAGACCAAGATCTTGCTGAACGATGGTGTGGTCACCAGTCCCT
TTGCCCGGCCTCGCAAGGCAGGTCACACATTGCTCATCCTGGGAGGCCAGACCTTCATGTGTGA
CAAGATCTACCAAGTGGACCACAAAGCCAAGGAGATTATCCCCAAGGCTGATCTGCCGAGCCCT
CGGAAGGAGTTCAGCGCTTCAGCGATTGGTTGCAAGGTCTACGTGACTGGAGGCAGGGGCTCTG
AGAATGGGGTCTCTAAGGATGTCTGGGTGTATGACACTGTCCATGAGGAATGGTCTAAGGCAGC
TCCCATGCTGATTGCCCGCTTTGGCCATGGCTCAGCTGAGCTGGAAAACTGTCTCTATGTGGTA
GGGGGGCATACATCCCTAGCAGGCATTTTCCCTGCCTCTCCTTCTGTCTCCCTGAAACAAGTTG
AGAAATATGACCCTGGGGATAATAAGTGGACTATGGTGGCCCCAATGAGAGACGGTGTCAGCAA
TGCTGCTGTGGTGAGTGCCAAGCTGAAACTCTTTGTGTTTGGAGGGACCAGCATCCACCGGGAC
ATGGTGTCCAAAGTCCAGTGTTTTGACCCCTCGGACAACCGGTGGACAATCAAGGCAGAATGTC
CCCAGCCTTGGCGATACACAGCAGCTGCTGTTCTGGGCAGCCAGATTTTCATCATGGGAGGTGA
CACAGAGTACACAGCAGCTTCAGCATATCGCTTCGACTGTGAGACCAACCAGTGGACGCGGATT
GGGGACATGACAGCCAAACGCATGTCCTGTCATGCTGTGGCTTCAGGCAACAAGCTGTATGTGG
TTGGAGGCTACTTTGGGACCCAGAGGTGTAAGACCCTGGACTGCTATGACCCTACTTCAGACAC
ATGGAACTGCATCACCAGCGTGCCCTACTCTCTCATTCCCACGGCCTTTGTTAGCACCTGGAAG
CATCTGCCTGCATGAAAGGCAGCTTCAGAGCCCAGCCAGCCTGTGTGCTTCTTCCTGCCTGGGC
CAGAAGCTGACAGCACCAGCTCCCGGCAGCAGCAGCTCCAGCAGGCCTTACCTCTAGGCATCGC
AATGAAGTTCTCCAGCATCACCTGTACTCGGTTCCCAAAGCTGCCAGAAGCTTGTGTGGAGAGA
AGCGTCCAGAGGCGTGGGCTGTCACCAGCAACCCAGGCCTGACAATGGCTAACAGGGAGGAGCA
GGGGTCCCTTGGCCCCAGCAGCACAGCCTTTGACTGTAGGGCTGTCTGTGGGAGCTGGGAATGG
TGCTCCAGTGTCCTGGACATCGGAAGCATAGTCCAACTGAAGACATTTTATAAGGACAGAAGCC
CCAGGGTCACCCAGCCTCAGGTGGGACCTACAGGCTCCATCAGCAGATGATACCAGACTGCTAC
GGCCAAGAGGAGATCATCCGTGTGCCCTCTGCCAAGAATGAGCTCACCCCCCAAGAGGTGACTT
TCCGGAAGCTTCCTTAGATGTAGGGCAGATGCCTGTGACCAGTCAGACACTGCTTAGGGTTCCC
CAGCAGGACTCTAGGCCCCTGAGAGCTGGTAGGGGCCTGATGCCTGCACTTCTCAGAGGCACAG
GACAGCAGCAGGTTATACCTCCCAATGTACTGGGCTCCTTTGTGGAGACCCTGTCCTGTGTCCT
GTTCCCTAAGAGGTCAGACATGAGTTGAATGGCAGGGGGACCCCACAGTCACGGCAGTTTGCAG
GGAGGTTGGATTTCTGTCATTGTGGGCCTAGCATTAAGGCTCCCATCACACCTGCTATCCTCTT
CAGCCCCAGCTGACAGCCTGAGTCCTGCCTGTGTGTTCCTTGAGCTCAGATAGACGGATCCGAA
GAAACTTCCCGAATGTGTTTCTCAAGGGTTCCCCCCCCAGTGTCCCCTGCATTAGGTTTGCAGA
GTCACCATCTTCTGATGCCAGTGTGGACTCCTCGCTCACCCCTGTTTGTCTAGTGCTCTTGGTT
TCCAGTCCAGGATGGGGAGTGTTCCATAGTTGGTGGCTTCCCATCGCTGCATGAGGATGGAGCA
TCCAGAGTGGGTTCTGCTCTTGACAGAAGTGGAGCCACAGTACAGACCGGTTTGGCCAGCCATC
AAGCTCCTGGAAGCTCAGCCTGGTACTTAGCTGAGTGACTTAGTCACACACTGCTCCCACCTGA
GGTCCAGCTGGTTTTCCATTCCACCTCAGGGTCAGCCTTGCTGGAGAATTGCAGGCTCTTGGCC
CATGGACTATGCCATCAGGAGCAATCAGTCTGCACAGCACAGAGGACCTAGCCCTGGTGCTTGC
CTGAGCATGGGTGTTACTTTTATTAGTTTCTAACTTAATAAAAGTGAGGAAGTTCTTGCCCTCC
TTTGGGTTCTGA

hide sequence

RefSeq Acc Id:

XM_008759505 ⟹ XP_008757727

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	139,134,655 - 139,159,898 (+)	NCBI
mRatBN7.2	1	129,724,894 - 129,750,142 (+)	NCBI
Rnor_6.0	1	137,333,880 - 137,359,107 (-)	NCBI

Sequence:

show sequence

GAAGGCCGGAGAAACTAGTTTGTTGGCGGCGCCGGTGCGGTTCGGCTACGGGATCGCGGCCGGG
ACTGGAGAGCCGGCCGGGGACGGCGGCAGCGGCGGGGACTGCGGAGCCTGTGGGGCCCCACGGT
GAGGACCAGGTGGATACACAATGTCAGTCAGCGTTCACGAGACCCGCAAGTCGCGGAGTAGCAC
AGGCTCCATGAACATCTCGGTCTTCCACAAGGCCTCGCACCCTGACTGTGTGCTGGCCCACCTC
AACACTCTGCGCAAGCACTGCATGTTCACCGACGTCACTCTCTGGGCTGGTGACCGAGCCTTTC
CTTGCCACCGTGCAGTGCTGGCTGCCTCCAGCCGATACTTTGAGGCCATGTTCAGCCATGGCCT
TCGGGAAAGCCGGGATGATACGGTCAACTTCCAGGACAACCTGCACCCTGAGGTGCTGGAGCTG
CTCCTGGACTTCGCCTACTCCTCTCGCATCGTCATCAATGAGGAGAACGCAGAGTCGCTGCTGG
AGGCTGGTGACATGTTGCAGTTCCATGACGTCCGGGATGCAGCTGCCGAGTTCCTGGAGAAGAA
TCTTTCCCCCTCCAACTGCCTTGGCATGATGGTGCTGTCTGATGCTCACCAGTGCCGGCGGCTC
TATGAGTTCTCATGCCGAATGTCCCTGGTACACTTTGAGACGGTGCGGCAGAGTGAGGACTTCA
ACAGTCTCTCTAGGGACACACTGTTGGACCTCATCTCCAGAGACGAGCTGGAGACTGAGGATGA
GCGCGTGGTCTTTGAGGCCATCCTGCAGTGGGTGAAGCATGACCTAGAGCAGAGGAAGGTCCAC
CTGCCACTGCTCCTGCGCAATGTGCGACTGGCCCTGCTACCCTCAGACTGTCTGAAGAAAGCCG
TCTCTGGAGAGGCCCTCCTCATGGCGGATGAGTGCACCAAACTCATCATAGATGAGGCCTTCCG
CTGCAAGACCAAGATCTTGCTGAACGATGGTGTGGTCACCAGTCCCTTTGCCCGGCCTCGCAAG
GCAGGTCACACATTGCTCATCCTGGGAGGCCAGACCTTCATGTGTGACAAGATCTACCAAGTGG
ACCACAAAGCCAAGGAGATTATCCCCAAGGCTGATCTGCCGAGCCCTCGGAAGGAGTTCAGCGC
TTCAGCGATTGGTTGCAAGGTCTACGTGACTGGAGGCAGGGGCTCTGAGAATGGGGTCTCTAAG
GATGTCTGGGTGTATGACACTGTCCATGAGGAATGGTCTAAGGCAGCTCCCATGCTGATTGCCC
GCTTTGGCCATGGCTCAGCTGAGCTGGAAAACTGTCTCTATGTGGTAGGGGGGCATACATCCCT
AGCAGGCATTTTCCCTGCCTCTCCTTCTGTCTCCCTGAAACAAGTTGAGAAATATGACCCTGGG
GATAATAAGTGGACTATGGTGGCCCCAATGAGAGACGGTGTCAGCAATGCTGCTGTGGTGAGTG
CCAAGCTGAAACTCTTTGTGTTTGGAGGGACCAGCATCCACCGGGACATGGTGTCCAAAGTCCA
GTGTTTTGACCCCTCGGACAACCGGTGGACAATCAAGGCAGAATGTCCCCAGCCTTGGCGATAC
ACAGCAGCTGCTGTTCTGGGCAGCCAGATTTTCATCATGGGAGGTGACACAGAGTACACAGCAG
CTTCAGCATATCGCTTCGACTGTGAGACCAACCAGTGGACGCGGATTGGGGACATGACAGCCAA
ACGCATGTCCTGTCATGCTGTGGCTTCAGGCAACAAGCTGTATGTGGTTGGAGGCTACTTTGGG
ACCCAGAGGTGTAAGACCCTGGACTGCTATGACCCTACTTCAGACACATGGAACTGCATCACCA
GCGTGCCCTACTCTCTCATTCCCACGGCCTTTGTTAGCACCTGGAAGCATCTGCCTGCATGAAA
GGCAGCTTCAGAGCCCAGCCAGCCTGTGTGCTTCTTCCTGCCTGGGCCAGAAGCTGACAGCACC
AGCTCCCGGCAGCAGCAGCTCCAGCAGGCCTTACCTCTAGGCATCGCAATGAAGTTCTCCAGCA
TCACCTGTACTCGGTTCCCAAAGCTGCCAGAAGCTTGTGTGGAGAGAAGCGTCCAGAGGCGTGG
GCTGTCACCAGCAACCCAGGCCTGACAATGGCTAACAGGGAGGAGCAGGGGTCCCTTGGCCCCA
GCAGCACAGCCTTTGACTGTAGGGCTGTCTGTGGGAGCTGGGAATGGTGCTCCAGTGTCCTGGA
CATCGGAAGCATAGTCCAACTGAAGACATTTTATAAGGACAGAAGCCCCAGGGTCACCCAGCCT
CAGGTGGGACCTACAGGCTCCATCAGCAGATGATACCAGACTGCTACGGCCAAGAGGAGATCAT
CCGTGTGCCCTCTGCCAAGAATGAGCTCACCCCCCAAGAGGTGACTTTCCGGAAGCTTCCTTAG
ATGTAGGGCAGATGCCTGTGACCAGTCAGACACTGCTTAGGGTTCCCCAGCAGGACTCTAGGCC
CCTGAGAGCTGGTAGGGGCCTGATGCCTGCACTTCTCAGAGGCACAGGACAGCAGCAGGTTATA
CCTCCCAATGTACTGGGCTCCTTTGTGGAGACCCTGTCCTGTGTCCTGTTCCCTAAGAGGTCAG
ACATGAGTTGAATGGCAGGGGGACCCCACAGTCACGGCAGTTTGCAGGGAGGTTGGATTTCTGT
CATTGTGGGCCTAGCATTAAGGCTCCCATCACACCTGCTATCCTCTTCAGCCCCAGCTGACAGC
CTGAGTCCTGCCTGTGTGTTCCTTGAGCTCAGATAGACGGATCCGAAGAAACTTCCCGAATGTG
TTTCTCAAGGGTTCCCCCCCCAGTGTCCCCTGCATTAGGTTTGCAGAGTCACCATCTTCTGATG
CCAGTGTGGACTCCTCGCTCACCCCTGTTTGTCTAGTGCTCTTGGTTTCCAGTCCAGGATGGGG
AGTGTTCCATAGTTGGTGGCTTCCCATCGCTGCATGAGGATGGAGCATCCAGAGTGGGTTCTGC
TCTTGACAGAAGTGGAGCCACAGTACAGACCGGTTTGGCCAGCCATCAAGCTCCTGGAAGCTCA
GCCTGGTACTTAGCTGAGTGACTTAGTCACACACTGCTCCCACCTGAGGTCCAGCTGGTTTTCC
ATTCCACCTCAGGGTCAGCCTTGCTGGAGAATTGCAGGCTCTTGGCCCATGGACTATGCCATCA
GGAGCAATCAGTCTGCACAGCACAGAGGACCTAGCCCTGGTGCTTGCCTGAGCATGGGTGTTAC
TTTTATTAGTTTCTAACTTAATAAAAGTGAGGAAGTTCTTGCCCTCCTTTGGGTTCTGA

hide sequence

RefSeq Acc Id:

XM_063284515 ⟹ XP_063140585

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	139,138,627 - 139,159,898 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001034095	(Get FASTA)	NCBI Sequence Viewer
	XP_006229442	(Get FASTA)	NCBI Sequence Viewer
	XP_008757727	(Get FASTA)	NCBI Sequence Viewer
	XP_063140585	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99111	(Get FASTA)	NCBI Sequence Viewer
	EDM08543	(Get FASTA)	NCBI Sequence Viewer
	EDM08545	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014553
	ENSRNOP00000014553.3
	ENSRNOP00000089869.1
	ENSRNOP00000090402.1
	ENSRNOP00000091951
	ENSRNOP00000091951.1
	ENSRNOP00000097538
	ENSRNOP00000097538.1
GenBank Protein	Q4KLM4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001034095 ⟸ NM_001039006

- UniProtKB:

Q4KLM4 (UniProtKB/Swiss-Prot), A6JC16 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSVSVHETRKSRSSTGSMNISVFHKASHPDCVLAHLNTLRKHCMFTDVTLWAGDRAFPCHRAVL
AASSRYFEAMFSHGLRESRDDTVNFQDNLHPEVLELLLDFAYSSRIVINEENAESLLEAGDMLQ
FHDVRDAAAEFLEKNLSPSNCLGMMVLSDAHQCRRLYEFSCRMSLVHFETVRQSEDFNSLSRDT
LLDLISRDELETEDERVVFEAILQWVKHDLEQRKVHLPLLLRNVRLALLPSDCLKKAVSGEALL
MADECTKLIIDEAFRCKTKILLNDGVVTSPFARPRKAGHTLLILGGQTFMCDKIYQVDHKAKEI
IPKADLPSPRKEFSASAIGCKVYVTGGRGSENGVSKDVWVYDTVHEEWSKAAPMLIARFGHGSA
ELENCLYVVGGHTSLAGIFPASPSVSLKQVEKYDPGDNKWTMVAPMRDGVSNAAVVSAKLKLFV
FGGTSIHRDMVSKVQCFDPSDNRWTIKAECPQPWRYTAAAVLGSQIFIMGGDTEYTAASAYRFD
CETNQWTRIGDMTAKRMSCHAVASGNKLYVVGGYFGTQRCKTLDCYDPTSDTWNCITSVPYSLI
PTAFVSTWKHLPA

hide sequence

RefSeq Acc Id:	XP_006229442 ⟸ XM_006229380
- Peptide Label:	isoform X1
- UniProtKB:	Q4KLM4 (UniProtKB/Swiss-Prot), A6JC16 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSVSVHETRKSRSSTGSMNISVFHKASHPDCVLAHLNTLRKHCMFTDVTLWAGDRAFPCHRAVL AASSRYFEAMFSHGLRESRDDTVNFQDNLHPEVLELLLDFAYSSRIVINEENAESLLEAGDMLQ FHDVRDAAAEFLEKNLSPSNCLGMMVLSDAHQCRRLYEFSCRMSLVHFETVRQSEDFNSLSRDT LLDLISRDELETEDERVVFEAILQWVKHDLEQRKVHLPLLLRNVRLALLPSDCLKKAVSGEALL MADECTKLIIDEAFRCKTKILLNDGVVTSPFARPRKAGHTLLILGGQTFMCDKIYQVDHKAKEI IPKADLPSPRKEFSASAIGCKVYVTGGRGSENGVSKDVWVYDTVHEEWSKAAPMLIARFGHGSA ELENCLYVVGGHTSLAGIFPASPSVSLKQVEKYDPGDNKWTMVAPMRDGVSNAAVVSAKLKLFV FGGTSIHRDMVSKVQCFDPSDNRWTIKAECPQPWRYTAAAVLGSQIFIMGGDTEYTAASAYRFD CETNQWTRIGDMTAKRMSCHAVASGNKLYVVGGYFGTQRCKTLDCYDPTSDTWNCITSVPYSLI PTAFVSTWKHLPA hide sequence

RefSeq Acc Id:	XP_008757727 ⟸ XM_008759505
- Peptide Label:	isoform X1
- UniProtKB:	Q4KLM4 (UniProtKB/Swiss-Prot), A6JC16 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSVSVHETRKSRSSTGSMNISVFHKASHPDCVLAHLNTLRKHCMFTDVTLWAGDRAFPCHRAVL AASSRYFEAMFSHGLRESRDDTVNFQDNLHPEVLELLLDFAYSSRIVINEENAESLLEAGDMLQ FHDVRDAAAEFLEKNLSPSNCLGMMVLSDAHQCRRLYEFSCRMSLVHFETVRQSEDFNSLSRDT LLDLISRDELETEDERVVFEAILQWVKHDLEQRKVHLPLLLRNVRLALLPSDCLKKAVSGEALL MADECTKLIIDEAFRCKTKILLNDGVVTSPFARPRKAGHTLLILGGQTFMCDKIYQVDHKAKEI IPKADLPSPRKEFSASAIGCKVYVTGGRGSENGVSKDVWVYDTVHEEWSKAAPMLIARFGHGSA ELENCLYVVGGHTSLAGIFPASPSVSLKQVEKYDPGDNKWTMVAPMRDGVSNAAVVSAKLKLFV FGGTSIHRDMVSKVQCFDPSDNRWTIKAECPQPWRYTAAAVLGSQIFIMGGDTEYTAASAYRFD CETNQWTRIGDMTAKRMSCHAVASGNKLYVVGGYFGTQRCKTLDCYDPTSDTWNCITSVPYSLI PTAFVSTWKHLPA hide sequence

RefSeq Acc Id:

ENSRNOP00000014553 ⟸ ENSRNOT00000014553

RefSeq Acc Id:

ENSRNOP00000089869 ⟸ ENSRNOT00000097328

RefSeq Acc Id:

ENSRNOP00000097538 ⟸ ENSRNOT00000111640

RefSeq Acc Id:

ENSRNOP00000090402 ⟸ ENSRNOT00000112874

RefSeq Acc Id:

ENSRNOP00000091951 ⟸ ENSRNOT00000112989

RefSeq Acc Id:	XP_063140585 ⟸ XM_063284515
- Peptide Label:	isoform X1
- UniProtKB:	Q4KLM4 (UniProtKB/Swiss-Prot), A6JC16 (UniProtKB/TrEMBL)

Protein Domains

BACK BTB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4KLM4-F1-model_v2	AlphaFold	Q4KLM4	1-589	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690119

Promoter ID:

EPDNEW_R644

Type:

initiation region

Name:

Klhl25_1

Description:

kelch-like family member 25

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	137,359,091 - 137,359,151	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310815	AgrOrtholog
BioCyc Gene	G2FUF-58861	BioCyc
Ensembl Genes	ENSRNOG00000010959	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000014553.5	UniProtKB/Swiss-Prot
	ENSRNOT00000097328.1	UniProtKB/Swiss-Prot
	ENSRNOT00000111640	ENTREZGENE
	ENSRNOT00000111640.1	UniProtKB/Swiss-Prot
	ENSRNOT00000112874.1	UniProtKB/Swiss-Prot
	ENSRNOT00000112989.1	UniProtKB/Swiss-Prot
Gene3D-CATH	1.25.40.420	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.120.10.80	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7461562	IMAGE-MGC_LOAD
InterPro	BACK	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BTB-kelch_protein	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BTB/POZ_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kelch-typ_b-propeller	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kelch_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	KLHL25	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SKP1/BTB/POZ_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:293023	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:116251	IMAGE-MGC_LOAD
NCBI Gene	293023	ENTREZGENE
PANTHER	ACTIN-BINDING PROTEIN IPP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	KELCH PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	BACK	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BTB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kelch_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Klhl25	PhenoGen
PIRSF	Kelch-like_protein_gigaxonin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	BTB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000010959	RatGTEx
SMART	BACK	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BTB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kelch	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Kelch motif	UniProtKB/TrEMBL
	POZ domain	UniProtKB/TrEMBL
	SSF117281	UniProtKB/Swiss-Prot
	SSF54695	UniProtKB/Swiss-Prot
UniProt	A6JC16	ENTREZGENE, UniProtKB/TrEMBL
	KLH25_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-02-27	Klhl25	kelch-like family member 25	Klhl25	kelch-like 25 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Klhl25	kelch-like 25 (Drosophila)	RGD1310815	similar to hypothetical protein FLJ12587	Symbol and Name updated	1299863	APPROVED
2005-12-06	RGD1310815	similar to hypothetical protein FLJ12587	RGD1310815_predicted	similar to hypothetical protein FLJ12587 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1310815_predicted	similar to hypothetical protein FLJ12587 (predicted)	LOC293023_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC293023_predicted	similar to hypothetical protein FLJ12587 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar