Cpeb2 (cytoplasmic polyadenylation element binding protein 2) - Rat Genome Database

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Gene: Cpeb2 (cytoplasmic polyadenylation element binding protein 2) Rattus norvegicus
Analyze
Symbol: Cpeb2
Name: cytoplasmic polyadenylation element binding protein 2
RGD ID: 1307485
Description: Enables GTPase inhibitor activity; mRNA regulatory element binding translation repressor activity; and ribosome binding activity. Involved in negative regulation of cytoplasmic translational elongation. Located in cytoplasm and nucleus. Orthologous to human CPEB2 (cytoplasmic polyadenylation element binding protein 2); INTERACTS WITH 1,3-dinitrobenzene; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytoplasmic polyadenylation element-binding protein 2; LOC360949
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81471,999,958 - 72,056,012 (-)NCBIGRCr8
mRatBN7.21467,787,503 - 67,839,973 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1467,787,507 - 67,840,743 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01472,327,929 - 72,382,519 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1472,331,705 - 72,380,330 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01472,356,390 - 72,408,723 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41472,955,778 - 73,007,518 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11472,958,170 - 73,009,889 (-)NCBI
Celera1466,739,757 - 66,794,869 (-)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
aconitic acid  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bromobenzene  (EXP)
butanal  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
calcitriol  (ISO)
chloroprene  (EXP,ISO)
chlorpyrifos  (EXP,ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (EXP)
hydrogen cyanide  (ISO)
indole-3-methanol  (EXP)
indometacin  (ISO)
L-methionine  (ISO)
mercury dibromide  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
N(gamma)-nitro-L-arginine methyl ester  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nickel atom  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium cyanide  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
propiconazole  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
streptozocin  (ISO)
sulforaphane  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vincristine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. CPEB2-eEF2 interaction impedes HIF-1alpha RNA translation. Chen PJ and Huang YS, EMBO J. 2012 Feb 15;31(4):959-71. doi: 10.1038/emboj.2011.448. Epub 2011 Dec 9.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12672660   PMID:18752464   PMID:20639532   PMID:22658674   PMID:22681889   PMID:25931508   PMID:29141213  


Genomics

Comparative Map Data
Cpeb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81471,999,958 - 72,056,012 (-)NCBIGRCr8
mRatBN7.21467,787,503 - 67,839,973 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1467,787,507 - 67,840,743 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01472,327,929 - 72,382,519 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1472,331,705 - 72,380,330 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01472,356,390 - 72,408,723 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41472,955,778 - 73,007,518 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11472,958,170 - 73,009,889 (-)NCBI
Celera1466,739,757 - 66,794,869 (-)NCBICelera
Cytogenetic Map14q21NCBI
CPEB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38415,002,481 - 15,070,151 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl415,002,481 - 15,070,153 (+)EnsemblGRCh38hg38GRCh38
GRCh37415,004,105 - 15,071,775 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36414,614,620 - 14,680,872 (+)NCBINCBI36Build 36hg18NCBI36
Celera415,469,162 - 15,536,022 (+)NCBICelera
Cytogenetic Map4p15.32NCBI
HuRef414,355,088 - 14,422,584 (+)NCBIHuRef
CHM1_1415,002,283 - 15,069,765 (+)NCBICHM1_1
T2T-CHM13v2.0414,984,261 - 15,051,932 (+)NCBIT2T-CHM13v2.0
Cpeb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39543,382,692 - 43,447,067 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl543,390,513 - 43,447,067 (+)EnsemblGRCm39 Ensembl
GRCm38543,225,349 - 43,289,724 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl543,233,170 - 43,289,724 (+)EnsemblGRCm38mm10GRCm38
MGSCv37543,624,702 - 43,680,963 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36543,522,207 - 43,574,438 (+)NCBIMGSCv36mm8
Celera540,646,207 - 40,718,936 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map523.65NCBI
Cpeb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554808,853,449 - 8,906,859 (-)NCBIChiLan1.0ChiLan1.0
CPEB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2315,272,455 - 15,339,911 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1415,470,336 - 15,537,786 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v049,431,573 - 9,499,036 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1414,732,309 - 14,800,069 (+)NCBIpanpan1.1PanPan1.1panPan2
CPEB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1365,200,175 - 65,277,353 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl365,203,759 - 65,267,967 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha367,717,257 - 67,785,783 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0365,792,581 - 65,861,000 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl365,794,192 - 65,861,000 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1365,167,715 - 65,236,072 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0365,371,886 - 65,440,166 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0365,731,829 - 65,800,251 (-)NCBIUU_Cfam_GSD_1.0
Cpeb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528559,025,633 - 59,097,078 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647712,727,325 - 12,798,733 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPEB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl810,401,350 - 10,472,136 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1810,401,350 - 10,472,141 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.289,970,709 - 10,009,656 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.289,816,503 - 9,826,023 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CPEB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12735,143,510 - 35,209,851 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2735,147,299 - 35,209,649 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604781,889,358 - 81,956,667 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpeb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475516,732,561 - 16,791,108 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cpeb2
145 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:59
Count of miRNA genes:55
Interacting mature miRNAs:59
Transcripts:ENSRNOT00000006727
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 12 12 12 60 9 9 10
Low 3 37 45 29 19 29 8 11 14 26 32 1 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008766209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF973322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF973323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000006727   ⟹   ENSRNOP00000006727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1467,791,035 - 67,840,743 (-)Ensembl
Rnor_6.0 Ensembl1472,331,705 - 72,380,330 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000081878   ⟹   ENSRNOP00000070514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1467,787,507 - 67,839,614 (-)Ensembl
Rnor_6.0 Ensembl1472,331,705 - 72,380,330 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000082653   ⟹   ENSRNOP00000073259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1467,791,035 - 67,840,718 (-)Ensembl
Rnor_6.0 Ensembl1472,331,705 - 72,380,330 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119809   ⟹   ENSRNOP00000076988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1467,787,507 - 67,840,743 (-)Ensembl
RefSeq Acc Id: XM_039092796   ⟹   XP_038948724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,056,012 (-)NCBI
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092797   ⟹   XP_038948725
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,056,012 (-)NCBI
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092798   ⟹   XP_038948726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,056,012 (-)NCBI
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092799   ⟹   XP_038948727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,056,012 (-)NCBI
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092801   ⟹   XP_038948729
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,056,012 (-)NCBI
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092802   ⟹   XP_038948730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,056,012 (-)NCBI
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092803   ⟹   XP_038948731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,056,012 (-)NCBI
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092804   ⟹   XP_038948732
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,056,012 (-)NCBI
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092805   ⟹   XP_038948733
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,056,012 (-)NCBI
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092806   ⟹   XP_038948734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,056,012 (-)NCBI
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092807   ⟹   XP_038948735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,056,012 (-)NCBI
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092808   ⟹   XP_038948736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,056,012 (-)NCBI
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092809   ⟹   XP_038948737
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,056,012 (-)NCBI
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092810   ⟹   XP_038948738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,050,107 (-)NCBI
mRatBN7.21467,787,503 - 67,837,657 (-)NCBI
RefSeq Acc Id: XM_063273830   ⟹   XP_063129900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,056,012 (-)NCBI
RefSeq Acc Id: XM_063273831   ⟹   XP_063129901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,050,107 (-)NCBI
RefSeq Acc Id: XM_063273832   ⟹   XP_063129902
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,050,107 (-)NCBI
RefSeq Acc Id: XM_063273833   ⟹   XP_063129903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,999,958 - 72,050,107 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000073259   ⟸   ENSRNOT00000082653
RefSeq Acc Id: ENSRNOP00000006727   ⟸   ENSRNOT00000006727
RefSeq Acc Id: ENSRNOP00000070514   ⟸   ENSRNOT00000081878
RefSeq Acc Id: XP_038948737   ⟸   XM_039092809
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038948735   ⟸   XM_039092807
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038948732   ⟸   XM_039092804
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038948730   ⟸   XM_039092802
- Peptide Label: isoform X6
- UniProtKB: A0A8I5Y989 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948727   ⟸   XM_039092799
- Peptide Label: isoform X4
- UniProtKB: D3ZHK8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948725   ⟸   XM_039092797
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038948736   ⟸   XM_039092808
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038948734   ⟸   XM_039092806
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038948731   ⟸   XM_039092803
- Peptide Label: isoform X7
- UniProtKB: A0A0G2K520 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948729   ⟸   XM_039092801
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038948726   ⟸   XM_039092798
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038948733   ⟸   XM_039092805
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038948724   ⟸   XM_039092796
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038948738   ⟸   XM_039092810
- Peptide Label: isoform X15
- UniProtKB: A6IJP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000076988   ⟸   ENSRNOT00000119809
RefSeq Acc Id: XP_063129900   ⟸   XM_063273830
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063129903   ⟸   XM_063273833
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063129902   ⟸   XM_063273832
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063129901   ⟸   XM_063273831
- Peptide Label: isoform X16
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K520-F1-model_v2 AlphaFold A0A0G2K520 1-745 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699360
Promoter ID:EPDNEW_R9882
Type:single initiation site
Name:Cpeb2_1
Description:cytoplasmic polyadenylation element binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01472,380,304 - 72,380,364EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307485 AgrOrtholog
BioCyc Gene G2FUF-15502 BioCyc
Ensembl Genes ENSRNOG00000005043 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006727.8 UniProtKB/TrEMBL
  ENSRNOT00000081878.2 UniProtKB/TrEMBL
  ENSRNOT00000082653.2 UniProtKB/TrEMBL
  ENSRNOT00000119809.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  4.10.640.40 UniProtKB/TrEMBL
InterPro CEBP_ZZ UniProtKB/TrEMBL
  CEBP_ZZ_sf UniProtKB/TrEMBL
  CPEB UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_RNP1 UniProtKB/TrEMBL
NCBI Gene 360949 ENTREZGENE
PANTHER CYTOPLASMIC POLYADENYLATION ELEMENT-BINDING PROTEIN 2 UniProtKB/TrEMBL
  PTHR12566 UniProtKB/TrEMBL
Pfam CEBP_ZZ UniProtKB/TrEMBL
  RRM_7 UniProtKB/TrEMBL
PhenoGen Cpeb2 PhenoGen
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005043 RatGTEx
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0G2JY45_RAT UniProtKB/TrEMBL
  A0A0G2K520 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y989 ENTREZGENE, UniProtKB/TrEMBL
  A6IJP7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZHK8 ENTREZGENE, UniProtKB/TrEMBL
  G8EXB7_RAT UniProtKB/TrEMBL
  G8EXB8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Cpeb2  cytoplasmic polyadenylation element binding protein 2   Cpeb2_predicted  cytoplasmic polyadenylation element binding protein 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cpeb2_predicted  cytoplasmic polyadenylation element binding protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED