Cpeb2 (cytoplasmic polyadenylation element binding protein 2) - Rat Genome Database

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Gene: Cpeb2 (cytoplasmic polyadenylation element binding protein 2) Chinchilla lanigera
Analyze
Symbol: Cpeb2
Name: cytoplasmic polyadenylation element binding protein 2
RGD ID: 8718710
Description: ENCODES a protein that exhibits GTPase inhibitor activity (ortholog); mRNA 3'-UTR AU-rich region binding (ortholog); mRNA regulatory element binding translation repressor activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); cellular response to insulin stimulus (ortholog); negative regulation of cytoplasmic translation (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytoplasmic polyadenylation element-binding protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554808,853,449 - 8,906,859 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cpeb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554808,853,449 - 8,906,859 (-)NCBIChiLan1.0ChiLan1.0
CPEB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38415,002,481 - 15,070,151 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl415,002,481 - 15,070,153 (+)EnsemblGRCh38hg38GRCh38
GRCh37415,004,105 - 15,071,775 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36414,614,620 - 14,680,872 (+)NCBINCBI36Build 36hg18NCBI36
Celera415,469,162 - 15,536,022 (+)NCBICelera
Cytogenetic Map4p15.32NCBI
HuRef414,355,088 - 14,422,584 (+)NCBIHuRef
CHM1_1415,002,283 - 15,069,765 (+)NCBICHM1_1
T2T-CHM13v2.0414,984,261 - 15,051,932 (+)NCBIT2T-CHM13v2.0
Cpeb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39543,382,692 - 43,447,067 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl543,390,513 - 43,447,067 (+)EnsemblGRCm39 Ensembl
GRCm38543,225,349 - 43,289,724 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl543,233,170 - 43,289,724 (+)EnsemblGRCm38mm10GRCm38
MGSCv37543,624,702 - 43,680,963 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36543,522,207 - 43,574,438 (+)NCBIMGSCv36mm8
Celera540,646,207 - 40,718,936 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map523.65NCBI
Cpeb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81471,999,958 - 72,056,012 (-)NCBIGRCr8
mRatBN7.21467,787,503 - 67,839,973 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1467,787,507 - 67,840,743 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01472,327,929 - 72,382,519 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1472,331,705 - 72,380,330 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01472,356,390 - 72,408,723 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41472,955,778 - 73,007,518 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11472,958,170 - 73,009,889 (-)NCBI
Celera1466,739,757 - 66,794,869 (-)NCBICelera
Cytogenetic Map14q21NCBI
CPEB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2315,272,455 - 15,339,911 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1415,470,336 - 15,537,786 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v049,431,573 - 9,499,036 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1414,732,309 - 14,800,069 (+)NCBIpanpan1.1PanPan1.1panPan2
CPEB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1365,200,175 - 65,277,353 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl365,203,759 - 65,267,967 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha367,717,257 - 67,785,783 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0365,792,581 - 65,861,000 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl365,794,192 - 65,861,000 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1365,167,715 - 65,236,072 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0365,371,886 - 65,440,166 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0365,731,829 - 65,800,251 (-)NCBIUU_Cfam_GSD_1.0
Cpeb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528559,025,633 - 59,097,078 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647712,727,325 - 12,798,733 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPEB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl810,401,350 - 10,472,136 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1810,401,350 - 10,472,141 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.289,970,709 - 10,009,656 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.289,816,503 - 9,826,023 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CPEB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12735,143,510 - 35,209,851 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2735,147,299 - 35,209,649 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604781,889,358 - 81,956,667 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpeb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475516,732,561 - 16,791,108 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013503330   ⟹   XP_013358784
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554808,853,449 - 8,906,859 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013358784 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001245.1
Reference Protein Sequences
RefSeq Acc Id: XP_013358784   ⟸   XM_013503330
- Sequence:
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000949 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001286.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro CPEB UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene Cpeb2 ENTREZGENE
PANTHER CYTOPLASMIC POLYADENYLATION ELEMENT-BINDING PROTEIN 2 UniProtKB/TrEMBL
  PTHR12566 UniProtKB/TrEMBL
Pfam RRM_7 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8C2YIJ2_CHILA UniProtKB/TrEMBL