CPEB2 (cytoplasmic polyadenylation element binding protein 2) - Rat Genome Database

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Gene: CPEB2 (cytoplasmic polyadenylation element binding protein 2) Sus scrofa
Analyze
Symbol: CPEB2
Name: cytoplasmic polyadenylation element binding protein 2
RGD ID: 13909026
Description: ENCODES a protein that exhibits GTPase inhibitor activity (ortholog); mRNA 3'-UTR AU-rich region binding (ortholog); poly-pyrimidine tract binding (ortholog); INVOLVED IN negative regulation of cytoplasmic translational elongation (ortholog); negative regulation of translational elongation (ortholog); regulation of translation at synapse, modulating synaptic transmission (ortholog); FOUND IN glutamatergic synapse (ortholog); ribosome (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cytoplasmic polyadenylation element-binding protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl810,401,350 - 10,472,136 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1810,401,350 - 10,472,141 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.289,970,709 - 10,009,656 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.289,816,503 - 9,826,023 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CPEB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl810,401,350 - 10,472,136 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1810,401,350 - 10,472,141 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.289,970,709 - 10,009,656 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.289,816,503 - 9,826,023 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CPEB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38415,002,481 - 15,070,151 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl415,002,481 - 15,070,153 (+)EnsemblGRCh38hg38GRCh38
GRCh37415,004,105 - 15,071,775 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36414,614,620 - 14,680,872 (+)NCBINCBI36Build 36hg18NCBI36
Celera415,469,162 - 15,536,022 (+)NCBICelera
Cytogenetic Map4p15.32NCBI
HuRef414,355,088 - 14,422,584 (+)NCBIHuRef
CHM1_1415,002,283 - 15,069,765 (+)NCBICHM1_1
T2T-CHM13v2.0414,984,261 - 15,051,932 (+)NCBIT2T-CHM13v2.0
Cpeb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39543,382,692 - 43,447,067 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl543,390,513 - 43,447,067 (+)EnsemblGRCm39 Ensembl
GRCm38543,225,349 - 43,289,724 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl543,233,170 - 43,289,724 (+)EnsemblGRCm38mm10GRCm38
MGSCv37543,624,702 - 43,680,963 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36543,522,207 - 43,574,438 (+)NCBIMGSCv36mm8
Celera540,646,207 - 40,718,936 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map523.65NCBI
Cpeb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81471,999,958 - 72,056,012 (-)NCBIGRCr8
mRatBN7.21467,787,503 - 67,839,973 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1467,787,507 - 67,840,743 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01472,327,929 - 72,382,519 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1472,331,705 - 72,380,330 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01472,356,390 - 72,408,723 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41472,955,778 - 73,007,518 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11472,958,170 - 73,009,889 (-)NCBI
Celera1466,739,757 - 66,794,869 (-)NCBICelera
Cytogenetic Map14q21NCBI
Cpeb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554808,853,449 - 8,906,859 (-)NCBIChiLan1.0ChiLan1.0
CPEB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2315,272,455 - 15,339,911 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1415,470,336 - 15,537,786 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v049,431,573 - 9,499,036 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1414,732,309 - 14,800,069 (+)NCBIpanpan1.1PanPan1.1panPan2
CPEB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1365,200,175 - 65,277,353 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl365,203,759 - 65,267,967 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha367,717,257 - 67,785,783 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0365,792,581 - 65,861,000 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl365,794,192 - 65,861,000 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1365,167,715 - 65,236,072 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0365,371,886 - 65,440,166 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0365,731,829 - 65,800,251 (-)NCBIUU_Cfam_GSD_1.0
Cpeb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528559,025,633 - 59,097,078 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647712,727,325 - 12,798,733 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPEB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12735,143,510 - 35,209,851 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2735,147,299 - 35,209,649 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604781,889,358 - 81,956,667 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpeb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475516,732,561 - 16,791,108 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CPEB2
1469 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 14 2 2 1
Low 9 4 3 4 2 9 1 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000049077   ⟹   ENSSSCP00000043515
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl810,401,350 - 10,472,136 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000061388   ⟹   ENSSSCP00000037280
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl810,401,350 - 10,472,136 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000064416   ⟹   ENSSSCP00000035085
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl810,401,350 - 10,472,136 (+)Ensembl
RefSeq Acc Id: NM_001185049   ⟹   NP_001171978
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1810,406,219 - 10,472,135 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100320   ⟹   XP_020955979
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1810,401,350 - 10,472,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100321   ⟹   XP_020955980
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1810,401,350 - 10,472,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100322   ⟹   XP_020955981
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1810,401,350 - 10,472,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100323   ⟹   XP_020955982
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1810,401,350 - 10,472,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100324   ⟹   XP_020955983
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1810,401,350 - 10,472,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100325   ⟹   XP_020955984
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1810,401,350 - 10,472,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100326   ⟹   XP_020955985
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1810,403,745 - 10,472,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100327   ⟹   XP_020955986
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1810,403,697 - 10,472,141 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001171978 (Get FASTA)   NCBI Sequence Viewer  
  XP_020955979 (Get FASTA)   NCBI Sequence Viewer  
  XP_020955980 (Get FASTA)   NCBI Sequence Viewer  
  XP_020955981 (Get FASTA)   NCBI Sequence Viewer  
  XP_020955982 (Get FASTA)   NCBI Sequence Viewer  
  XP_020955983 (Get FASTA)   NCBI Sequence Viewer  
  XP_020955984 (Get FASTA)   NCBI Sequence Viewer  
  XP_020955985 (Get FASTA)   NCBI Sequence Viewer  
  XP_020955986 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ADH15877 (Get FASTA)   NCBI Sequence Viewer  
  ADH15878 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000035085
  ENSSSCP00000035085.3
  ENSSSCP00000037280
  ENSSSCP00000037280.1
  ENSSSCP00000043515
  ENSSSCP00000043515.3
  ENSSSCP00005039508.1
  ENSSSCP00005039524.1
  ENSSSCP00005039607.1
  ENSSSCP00015026486.1
  ENSSSCP00015026548.1
  ENSSSCP00025026347.1
  ENSSSCP00025026469.1
  ENSSSCP00030032007.1
  ENSSSCP00030032017.1
  ENSSSCP00030032051.1
  ENSSSCP00030032069.1
  ENSSSCP00035016845.1
  ENSSSCP00035016849.1
  ENSSSCP00035016851.1
  ENSSSCP00045037853.1
  ENSSSCP00045037931.1
  ENSSSCP00045038181.1
  ENSSSCP00045038297.1
  ENSSSCP00050000305.1
  ENSSSCP00050000317.1
  ENSSSCP00055008093.1
  ENSSSCP00055008130.1
  ENSSSCP00055008179.1
  ENSSSCP00060003915.1
  ENSSSCP00060003918.1
  ENSSSCP00070039660.1
  ENSSSCP00070039663.1
  ENSSSCP00070039668.1
  ENSSSCP00070039673.1
Reference Protein Sequences
RefSeq Acc Id: XP_020955981   ⟸   XM_021100322
- Peptide Label: isoform X3
- UniProtKB: A0A287AI07 (UniProtKB/TrEMBL),   A0A8D0X3S3 (UniProtKB/TrEMBL),   A0A8D1ST58 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955983   ⟸   XM_021100324
- Peptide Label: isoform X5
- UniProtKB: A0A8D0X3S3 (UniProtKB/TrEMBL),   A0A8D1ST58 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955979   ⟸   XM_021100320
- Peptide Label: isoform X1
- UniProtKB: A0A286ZUF4 (UniProtKB/TrEMBL),   A0A8D1CBH0 (UniProtKB/TrEMBL),   A0A8D1SPG2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955980   ⟸   XM_021100321
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020955982   ⟸   XM_021100323
- Peptide Label: isoform X4
- UniProtKB: A0A8D0S4F7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955984   ⟸   XM_021100325
- Peptide Label: isoform X6
- UniProtKB: A0A8D0S4F7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955986   ⟸   XM_021100327
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_020955985   ⟸   XM_021100326
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: NP_001171978   ⟸   NM_001185049
- UniProtKB: A0A287A0M0 (UniProtKB/TrEMBL),   A0A8D0S4Q1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000035085   ⟸   ENSSSCT00000064416
RefSeq Acc Id: ENSSSCP00000043515   ⟸   ENSSSCT00000049077
RefSeq Acc Id: ENSSSCP00000037280   ⟸   ENSSSCT00000061388
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038410 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005039711 UniProtKB/TrEMBL
  ENSSSCG00015049617 UniProtKB/TrEMBL
  ENSSSCG00025045621 UniProtKB/TrEMBL
  ENSSSCG00030050212 UniProtKB/TrEMBL
  ENSSSCG00035031794 UniProtKB/TrEMBL
  ENSSSCG00045031525 UniProtKB/TrEMBL
  ENSSSCG00050000928 UniProtKB/TrEMBL
  ENSSSCG00055005249 UniProtKB/TrEMBL
  ENSSSCG00060008314 UniProtKB/TrEMBL
  ENSSSCG00070023593 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000049077 ENTREZGENE
  ENSSSCT00000049077.3 UniProtKB/TrEMBL
  ENSSSCT00000061388 ENTREZGENE
  ENSSSCT00000061388.2 UniProtKB/TrEMBL
  ENSSSCT00000064416 ENTREZGENE
  ENSSSCT00000064416.3 UniProtKB/TrEMBL
  ENSSSCT00005063935.1 UniProtKB/TrEMBL
  ENSSSCT00005063956.1 UniProtKB/TrEMBL
  ENSSSCT00005064103.1 UniProtKB/TrEMBL
  ENSSSCT00015066127.1 UniProtKB/TrEMBL
  ENSSSCT00015066273.1 UniProtKB/TrEMBL
  ENSSSCT00025062053.1 UniProtKB/TrEMBL
  ENSSSCT00025062306.1 UniProtKB/TrEMBL
  ENSSSCT00030070196.1 UniProtKB/TrEMBL
  ENSSSCT00030070221.1 UniProtKB/TrEMBL
  ENSSSCT00030070285.1 UniProtKB/TrEMBL
  ENSSSCT00030070316.1 UniProtKB/TrEMBL
  ENSSSCT00035042111.1 UniProtKB/TrEMBL
  ENSSSCT00035042119.1 UniProtKB/TrEMBL
  ENSSSCT00035042124.1 UniProtKB/TrEMBL
  ENSSSCT00045054365.1 UniProtKB/TrEMBL
  ENSSSCT00045054467.1 UniProtKB/TrEMBL
  ENSSSCT00045054793.1 UniProtKB/TrEMBL
  ENSSSCT00045054946.1 UniProtKB/TrEMBL
  ENSSSCT00050001203.1 UniProtKB/TrEMBL
  ENSSSCT00050001225.1 UniProtKB/TrEMBL
  ENSSSCT00055010243.1 UniProtKB/TrEMBL
  ENSSSCT00055010293.1 UniProtKB/TrEMBL
  ENSSSCT00055010357.1 UniProtKB/TrEMBL
  ENSSSCT00060010660.1 UniProtKB/TrEMBL
  ENSSSCT00060010668.1 UniProtKB/TrEMBL
  ENSSSCT00070047012.1 UniProtKB/TrEMBL
  ENSSSCT00070047015.1 UniProtKB/TrEMBL
  ENSSSCT00070047020.1 UniProtKB/TrEMBL
  ENSSSCT00070047027.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  4.10.640.40 UniProtKB/TrEMBL
InterPro CEBP_ZZ UniProtKB/TrEMBL
  CEBP_ZZ_sf UniProtKB/TrEMBL
  CPEB UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report ssc:100462674 UniProtKB/TrEMBL
NCBI Gene CPEB2 ENTREZGENE
PANTHER CYTOPLASMIC POLYADENYLATION ELEMENT-BINDING PROTEIN 2 UniProtKB/TrEMBL
  PTHR12566 UniProtKB/TrEMBL
Pfam CEBP_ZZ UniProtKB/TrEMBL
  RRM_7 UniProtKB/TrEMBL
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A286ZUF4 ENTREZGENE, UniProtKB/TrEMBL
  A0A287A0M0 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AI07 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VD91_PIG UniProtKB/TrEMBL
  A0A4X1VDE2_PIG UniProtKB/TrEMBL
  A0A4X1VFY6_PIG UniProtKB/TrEMBL
  A0A4X1VFZ0_PIG UniProtKB/TrEMBL
  A0A8D0K8X7_PIG UniProtKB/TrEMBL
  A0A8D0KEY2_PIG UniProtKB/TrEMBL
  A0A8D0LVY9_PIG UniProtKB/TrEMBL
  A0A8D0P7G3_PIG UniProtKB/TrEMBL
  A0A8D0S4F7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0S4Q1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0X3S3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0X731_PIG UniProtKB/TrEMBL
  A0A8D0ZK63_PIG UniProtKB/TrEMBL
  A0A8D1CBH0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CS40_PIG UniProtKB/TrEMBL
  A0A8D1CSE3_PIG UniProtKB/TrEMBL
  A0A8D1IY35_PIG UniProtKB/TrEMBL
  A0A8D1L5J8_PIG UniProtKB/TrEMBL
  A0A8D1PPR3_PIG UniProtKB/TrEMBL
  A0A8D1PUS2_PIG UniProtKB/TrEMBL
  A0A8D1SPG2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ST58 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TVX8_PIG UniProtKB/TrEMBL
  D7R611_PIG UniProtKB/TrEMBL
  D7R612_PIG UniProtKB/TrEMBL
UniProt Secondary F1S5F0 UniProtKB/TrEMBL
VGNC ID VGNC:86937 ENTREZGENE