Cpeb2 (cytoplasmic polyadenylation element binding protein 2) - Rat Genome Database

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Gene: Cpeb2 (cytoplasmic polyadenylation element binding protein 2) Mus musculus
Analyze
Symbol: Cpeb2
Name: cytoplasmic polyadenylation element binding protein 2
RGD ID: 1316708
MGI Page MGI
Description: Enables nucleic acid binding activity and ribosome binding activity. Involved in cellular response to hypoxia; negative regulation of cytoplasmic translation; and regulation of translation at synapse, modulating synaptic transmission. Acts upstream of or within negative regulation of translational elongation. Located in cytoplasm and ribosome. Is active in glutamatergic synapse. Is expressed in central nervous system; early conceptus; and olfactory epithelium. Orthologous to human CPEB2 (cytoplasmic polyadenylation element binding protein 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A630055H10Rik; CPE-binding protein 2; Cpe-bp2; cytoplasmic polyadenylation element-binding protein 2; mCPEB-2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39543,382,692 - 43,447,067 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl543,390,513 - 43,447,067 (+)EnsemblGRCm39 Ensembl
GRCm38543,225,349 - 43,289,724 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl543,233,170 - 43,289,724 (+)EnsemblGRCm38mm10GRCm38
MGSCv37543,624,702 - 43,680,963 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36543,522,207 - 43,574,438 (+)NCBIMGSCv36mm8
Celera540,646,207 - 40,718,936 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map523.65NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
aconitic acid  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bromobenzene  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
chloroprene  (EXP,ISO)
chlorpyrifos  (EXP,ISO)
choline  (EXP)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibric acid  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (EXP)
ethyl methanesulfonate  (ISO)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
FR900359  (ISO)
genistein  (EXP)
gentamycin  (ISO)
hydrogen cyanide  (EXP)
indole-3-methanol  (ISO)
indometacin  (ISO)
L-methionine  (EXP)
mercury dibromide  (ISO)
methotrexate  (EXP,ISO)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
N(gamma)-nitro-L-arginine methyl ester  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
nickel atom  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
potassium cyanide  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
propiconazole  (EXP)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
streptozocin  (EXP)
sulforaphane  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP)
thimerosal  (ISO)
thioacetamide  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
troglitazone  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12672660   PMID:12871996   PMID:15489334   PMID:16033648   PMID:16141072   PMID:16141073  
PMID:17927953   PMID:18752464   PMID:21677750   PMID:21873635   PMID:22157746   PMID:25483308   PMID:27810937   PMID:29141213   PMID:30111840   PMID:30177570   PMID:31138677   PMID:32295602  
PMID:32440535   PMID:33945509   PMID:35133290   PMID:36064747  


Genomics

Comparative Map Data
Cpeb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39543,382,692 - 43,447,067 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl543,390,513 - 43,447,067 (+)EnsemblGRCm39 Ensembl
GRCm38543,225,349 - 43,289,724 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl543,233,170 - 43,289,724 (+)EnsemblGRCm38mm10GRCm38
MGSCv37543,624,702 - 43,680,963 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36543,522,207 - 43,574,438 (+)NCBIMGSCv36mm8
Celera540,646,207 - 40,718,936 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map523.65NCBI
CPEB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38415,002,481 - 15,070,151 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl415,002,481 - 15,070,153 (+)EnsemblGRCh38hg38GRCh38
GRCh37415,004,105 - 15,071,775 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36414,614,620 - 14,680,872 (+)NCBINCBI36Build 36hg18NCBI36
Celera415,469,162 - 15,536,022 (+)NCBICelera
Cytogenetic Map4p15.32NCBI
HuRef414,355,088 - 14,422,584 (+)NCBIHuRef
CHM1_1415,002,283 - 15,069,765 (+)NCBICHM1_1
T2T-CHM13v2.0414,984,261 - 15,051,932 (+)NCBIT2T-CHM13v2.0
Cpeb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81471,999,958 - 72,056,012 (-)NCBIGRCr8
mRatBN7.21467,787,503 - 67,839,973 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1467,787,507 - 67,840,743 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01472,327,929 - 72,382,519 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1472,331,705 - 72,380,330 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01472,356,390 - 72,408,723 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41472,955,778 - 73,007,518 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11472,958,170 - 73,009,889 (-)NCBI
Celera1466,739,757 - 66,794,869 (-)NCBICelera
Cytogenetic Map14q21NCBI
Cpeb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554808,853,449 - 8,906,859 (-)NCBIChiLan1.0ChiLan1.0
CPEB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2315,272,455 - 15,339,911 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1415,470,336 - 15,537,786 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v049,431,573 - 9,499,036 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1414,732,309 - 14,800,069 (+)NCBIpanpan1.1PanPan1.1panPan2
CPEB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1365,200,175 - 65,277,353 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl365,203,759 - 65,267,967 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha367,717,257 - 67,785,783 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0365,792,581 - 65,861,000 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl365,794,192 - 65,861,000 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1365,167,715 - 65,236,072 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0365,371,886 - 65,440,166 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0365,731,829 - 65,800,251 (-)NCBIUU_Cfam_GSD_1.0
Cpeb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528559,025,633 - 59,097,078 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647712,727,325 - 12,798,733 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPEB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl810,401,350 - 10,472,136 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1810,401,350 - 10,472,141 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.289,970,709 - 10,009,656 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.289,816,503 - 9,826,023 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CPEB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12735,143,510 - 35,209,851 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2735,147,299 - 35,209,649 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604781,889,358 - 81,956,667 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpeb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475516,732,561 - 16,791,108 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cpeb2
2164 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3742
Count of miRNA genes:580
Interacting mature miRNAs:752
Transcripts:ENSMUST00000114065, ENSMUST00000114066, ENSMUST00000127599, ENSMUST00000166713, ENSMUST00000169035
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53102427565024480Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53102427565024480Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53585456869854714Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53585456869854714Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3643342370433423Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53649448670494598Mouse
36049766Ars22_mantibody response to SARS-CoV 22, day 29, IgG3 (mouse)53695734445457342Mouse
36049767Ars23_mantibody response to SARS-CoV 23, day 29, Total IgG (mouse)53695734445457342Mouse
36049768Ars24_mantibody response to SARS-CoV 24, 4 days post-rechallenge, IgG3 (mouse)53695734445457342Mouse
36049769Ars13_mantibody response to SARS-CoV 13, day 7, IgG2a+IgG2c (mouse)53695734445457342Mouse
36049770Ars14_mantibody response to SARS-CoV 14, day 7, IgG3 (mouse)53695734445457342Mouse
36049771Ars15_mantibody response to SARS-CoV 15, day 7, IgM (mouse)53695734445457342Mouse
36049772Ars20_mantibody response to SARS-CoV 20, day 15, Total IgG (mouse)53695734445457342Mouse
36049773Ars21_mantibody response to SARS-CoV 21, day 29, IgG2a+IgG2c (mouse)53695734445457342Mouse
36049774Ars16_mantibody response to SARS-CoV 16, day 7, Total IgG (mouse)53695734445457342Mouse
36049775Ars17_mantibody response to SARS-CoV 17, day 15, IgG2a+IgG2c (mouse)53695734445457342Mouse
36049776Ars18_mantibody response to SARS-CoV 18, day 15, IgG3 (mouse)53695734445457342Mouse
36049777Ars19_mantibody response to SARS-CoV 19, day 15, IgM (mouse)53695734445457342Mouse
35673310Ari4_mantibody response to influenza 4, day 15-45, IgG2b (mouse)53695734445457342Mouse
1300926Hpi2_mhepatic PMN infiltration 2 (mouse)Not determined53758148864806579Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53764377771643896Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53811168172111798Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53811168172111798Mouse

Markers in Region
Cpeb2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5BUniSTS
cM Map5 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001177379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001368805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001368806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001368807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB100307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC105174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000114065   ⟹   ENSMUSP00000109699
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl543,390,513 - 43,447,067 (+)Ensembl
GRCm38.p6 Ensembl543,233,170 - 43,289,724 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114066   ⟹   ENSMUSP00000109700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl543,392,381 - 43,438,553 (+)Ensembl
GRCm38.p6 Ensembl543,235,038 - 43,281,210 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127599
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl543,394,658 - 43,403,802 (+)Ensembl
GRCm38.p6 Ensembl543,237,315 - 43,246,459 (+)Ensembl
RefSeq Acc Id: ENSMUST00000166713   ⟹   ENSMUSP00000130921
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl543,390,513 - 43,447,066 (+)Ensembl
GRCm38.p6 Ensembl543,233,170 - 43,289,723 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169035   ⟹   ENSMUSP00000125857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl543,390,513 - 43,447,067 (+)Ensembl
GRCm38.p6 Ensembl543,233,170 - 43,289,724 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198754
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl543,391,270 - 43,395,262 (+)Ensembl
GRCm38.p6 Ensembl543,233,927 - 43,237,919 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200685
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl543,392,393 - 43,393,228 (+)Ensembl
GRCm38.p6 Ensembl543,235,050 - 43,235,885 (+)Ensembl
RefSeq Acc Id: NM_001177379   ⟹   NP_001170850
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39543,390,596 - 43,447,067 (+)NCBI
GRCm38543,233,253 - 43,289,724 (+)NCBI
MGSCv37543,624,702 - 43,680,963 (+)RGD
Celera540,646,207 - 40,718,936 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001368805   ⟹   NP_001355734
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39543,390,596 - 43,447,067 (+)NCBI
GRCm38543,233,253 - 43,289,724 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001368806   ⟹   NP_001355735
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39543,390,596 - 43,447,067 (+)NCBI
GRCm38543,233,253 - 43,289,724 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001368807   ⟹   NP_001355736
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39543,390,596 - 43,447,067 (+)NCBI
GRCm38543,233,253 - 43,289,724 (+)NCBI
Sequence:
RefSeq Acc Id: NM_175937   ⟹   NP_787951
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39543,390,596 - 43,447,067 (+)NCBI
GRCm38543,233,253 - 43,289,724 (+)NCBI
MGSCv37543,624,702 - 43,680,963 (+)RGD
Celera540,646,207 - 40,718,936 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006503929   ⟹   XP_006503992
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39543,382,692 - 43,445,456 (+)NCBI
GRCm38543,225,349 - 43,288,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006503931   ⟹   XP_006503994
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39543,382,692 - 43,445,456 (+)NCBI
GRCm38543,225,349 - 43,288,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006503932   ⟹   XP_006503995
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39543,382,692 - 43,445,456 (+)NCBI
GRCm38543,225,349 - 43,288,113 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_787951   ⟸   NM_175937
- Peptide Label: isoform 1
- UniProtKB: A0A0H2UH22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001170850   ⟸   NM_001177379
- Peptide Label: isoform 2
- UniProtKB: E9Q5X2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006503992   ⟸   XM_006503929
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006503994   ⟸   XM_006503931
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006503995   ⟸   XM_006503932
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001355734   ⟸   NM_001368805
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001355736   ⟸   NM_001368807
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001355735   ⟸   NM_001368806
- Peptide Label: isoform 4
- UniProtKB: E9Q969 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000130921   ⟸   ENSMUST00000166713
RefSeq Acc Id: ENSMUSP00000125857   ⟸   ENSMUST00000169035
RefSeq Acc Id: ENSMUSP00000109699   ⟸   ENSMUST00000114065
RefSeq Acc Id: ENSMUSP00000109700   ⟸   ENSMUST00000114066
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q812E0-F1-model_v2 AlphaFold Q812E0 1-521 view protein structure

Promoters
RGD ID:6886608
Promoter ID:EPDNEW_M6755
Type:single initiation site
Name:Cpeb2_1
Description:Mus musculus cytoplasmic polyadenylation element binding protein2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38543,233,489 - 43,233,549EPDNEW
RGD ID:6837302
Promoter ID:MM_KWN:42145
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000051378,   ENSMUST00000114065,   ENSMUST00000114066,   NM_175937
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36543,624,246 - 43,625,212 (+)MPROMDB
RGD ID:6837304
Promoter ID:MM_KWN:42146
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:UC008XHJ.1,   UC008XHK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36543,625,969 - 43,626,469 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442640 AgrOrtholog
Ensembl Genes ENSMUSG00000039782 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000114065 ENTREZGENE
  ENSMUST00000114065.9 UniProtKB/TrEMBL
  ENSMUST00000114066.3 UniProtKB/TrEMBL
  ENSMUST00000166713 ENTREZGENE
  ENSMUST00000166713.9 UniProtKB/TrEMBL
  ENSMUST00000169035 ENTREZGENE
  ENSMUST00000169035.8 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  4.10.640.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CEBP_ZZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CEBP_ZZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CPEB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:231207 UniProtKB/TrEMBL
MGD MGI:2442640 ENTREZGENE
NCBI Gene 231207 ENTREZGENE
PANTHER CYTOPLASMIC POLYADENYLATION ELEMENT-BINDING PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12566 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CEBP_ZZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cpeb2 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0H2UH22 ENTREZGENE, UniProtKB/TrEMBL
  CPEB2_MOUSE UniProtKB/Swiss-Prot
  D3YUJ4_MOUSE UniProtKB/TrEMBL
  E9Q5X2 ENTREZGENE, UniProtKB/TrEMBL
  E9Q969 ENTREZGENE, UniProtKB/TrEMBL
  Q812E0 ENTREZGENE