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Gene: Casp8ap2 (caspase 8 associated protein 2) Rattus norvegicus

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Symbol:

Casp8ap2

Name:

caspase 8 associated protein 2

RGD ID:

1305771

Description:

Predicted to enable several functions, including SUMO polymer binding activity; cysteine-type endopeptidase activator activity involved in apoptotic process; and transcription corepressor activity. Predicted to be involved in Fas signaling pathway; cellular response to mechanical stimulus; and extrinsic apoptotic signaling pathway via death domain receptors. Located in cytoplasm and nucleus. Orthologous to human CASP8AP2 (caspase 8 associated protein 2); PARTICIPATES IN aldosterone signaling pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CASP8-associated protein 2; LOC313128

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CASP8AP2 (caspase 8 associated protein 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, Panther, PhylomeDB
Mus musculus (house mouse):	Casp8ap2 (caspase 8 associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Casp8ap2 (caspase 8 associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CASP8AP2 (caspase 8 associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CASP8AP2 (caspase 8 associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Casp8ap2 (caspase 8 associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CASP8AP2 (caspase 8 associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CASP8AP2 (caspase 8 associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Casp8ap2 (caspase 8 associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Casp8ap2 (caspase 8 associated protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CASP8AP2 (caspase 8 associated protein 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Casp8ap2 (caspase 8 associated protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	casp8ap2 (caspase 8 associated protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	casp8ap2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	51,809,366 - 51,848,633 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	51,810,972 - 51,848,632 (+)	Ensembl				GRCr8
mRatBN7.2	5	47,014,501 - 47,052,276 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	47,014,667 - 47,052,275 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	49,156,788 - 49,194,344 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	50,755,948 - 50,793,505 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	50,701,113 - 50,738,716 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	5	51,932,565 - 51,970,099 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	5	53,336,830 - 53,374,364 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	5	52,776,804 - 52,812,639 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	5	46,652,015 - 46,689,549 (+)	NCBI		F344_StmMcwi
Rnor_6.0	5	47,853,699 - 47,891,147 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	47,853,818 - 47,891,668 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	52,451,775 - 52,489,186 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	48,920,175 - 48,958,139 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	45,775,811 - 45,813,420 (+)	NCBI		Celera
RGSC_v3.1	5	48,928,473 - 49,096,830 (+)	NCBI
Cytogenetic Map	5	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (EXP)

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

8'-apo-beta,psi-caroten-8'-al (ISO)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

aristolochic acid A (ISO)

arsenous acid (EXP,ISO)

atrazine (ISO)

benzatropine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

C60 fullerene (EXP)

cadmium dichloride (ISO)

caffeine (ISO)

cannabidiol (ISO)

chloroprene (EXP)

chromium(6+) (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

coumestrol (ISO)

Cuprizon (ISO)

daidzein (ISO)

daidzein 7-O-beta-D-glucoside (ISO)

DDE (EXP,ISO)

dexamethasone (ISO)

diarsenic trioxide (EXP,ISO)

diazinon (EXP)

dieldrin (EXP)

diethylstilbestrol (ISO)

dioxygen (EXP)

doxorubicin (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

furan (EXP)

genistein (ISO)

genistein 7-O-beta-D-glucoside (ISO)

gentamycin (EXP)

glycitein (ISO)

glycitin (ISO)

hydrogen peroxide (ISO)

ketoconazole (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

Mitotane (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (ISO)

oxaliplatin (EXP)

p-menthan-3-ol (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

propylparaben (ISO)

quercetin (EXP)

resveratrol (EXP,ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

sodium fluoride (ISO)

succimer (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tungsten (ISO)

usnic acid (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

apoptotic signaling pathway (IEA)

biological_process (ND)

cellular response to mechanical stimulus (ISO)

DNA-templated transcription (IEA)

extrinsic apoptotic signaling pathway via death domain receptors (IBA,IEA,ISO)

Fas signaling pathway (IBA,ISO)

negative regulation of DNA-templated transcription (IEA)

Cellular Component

cytoplasm (IDA,IEA,ISO)

mitochondrion (IBA,IEA,ISO)

nucleus (IDA,ISO)

PML body (IBA,IEA,ISO)

Molecular Function

cysteine-type endopeptidase activator activity involved in apoptotic process (IEA,ISO)

identical protein binding (IEA,ISO)

protease binding (IEA,ISO)

protein binding (ISO)

SUMO polymer binding (ISO)

transcription corepressor activity (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

aldosterone signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Ischemic preconditioning augments survival of stem cells via miR-210 expression by targeting caspase-8-associated protein 2.	Kim HW, etal., J Biol Chem. 2009 Nov 27;284(48):33161-8. doi: 10.1074/jbc.M109.020925. Epub 2009 Aug 31.
3.	Protection of Human Umbilical Vein Endothelial Cells against Oxidative Stress by MicroRNA-210.	Li T, etal., Oxid Med Cell Longev. 2017;2017:3565613. doi: 10.1155/2017/3565613. Epub 2017 Mar 7.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Comprehensive gene review and curation	RGD comprehensive gene curation
8.	Interactions of the mineralocorticoid receptor--within and without.	Yang J and Fuller PJ, Mol Cell Endocrinol. 2012 Mar 24;350(2):196-205. doi: 10.1016/j.mce.2011.07.001. Epub 2011 Jul 18.

Additional References at PubMed

PMID:10235259	PMID:12477726	PMID:17245429	PMID:19593445	PMID:22482882	PMID:23086935	PMID:33234216	PMID:33882492

Genomics

Comparative Map Data

Casp8ap2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	51,809,366 - 51,848,633 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	51,810,972 - 51,848,632 (+)	Ensembl				GRCr8
mRatBN7.2	5	47,014,501 - 47,052,276 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	47,014,667 - 47,052,275 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	49,156,788 - 49,194,344 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	50,755,948 - 50,793,505 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	50,701,113 - 50,738,716 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	5	51,932,565 - 51,970,099 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	5	53,336,830 - 53,374,364 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	5	52,776,804 - 52,812,639 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	5	46,652,015 - 46,689,549 (+)	NCBI		F344_StmMcwi
Rnor_6.0	5	47,853,699 - 47,891,147 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	47,853,818 - 47,891,668 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	52,451,775 - 52,489,186 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	48,920,175 - 48,958,139 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	45,775,811 - 45,813,420 (+)	NCBI		Celera
RGSC_v3.1	5	48,928,473 - 49,096,830 (+)	NCBI
Cytogenetic Map	5	q21	NCBI

CASP8AP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	89,829,880 - 89,874,436 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	89,829,894 - 89,874,436 (+)	Ensembl			hg38	GRCh38
GRCh37	6	90,539,599 - 90,584,155 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	90,596,379 - 90,640,876 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	90,596,378 - 90,640,875	NCBI
Celera	6	90,958,564 - 91,004,713 (+)	NCBI		Celera
Cytogenetic Map	6	q15	NCBI
HuRef	6	87,756,992 - 87,803,539 (+)	NCBI		HuRef
CHM1_1	6	90,637,186 - 90,681,833 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	91,029,094 - 91,086,157 (+)	NCBI		T2T-CHM13v2.0

Casp8ap2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	32,615,462 - 32,653,271 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	32,615,451 - 32,653,265 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	32,615,470 - 32,653,271 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	32,615,451 - 32,653,265 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	32,702,448 - 32,740,240 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	32,944,126 - 32,981,873 (+)	NCBI		MGSCv36	mm8
Celera	4	32,362,733 - 32,400,576 (+)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	14.27	NCBI

Casp8ap2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	16,536,022 - 16,560,624 (-)	Ensembl
ChiLan1.0	NW_004955411	16,535,646 - 16,568,139 (-)	NCBI	ChiLan1.0	ChiLan1.0

CASP8AP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	109,912,615 - 109,959,693 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	107,811,413 - 107,860,815 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	87,707,152 - 87,754,836 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	90,979,710 - 91,026,770 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	90,996,127 - 91,023,757 (+)	Ensembl			panPan2	panpan1.1

CASP8AP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	49,040,069 - 49,077,418 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	49,039,411 - 49,077,688 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	48,847,072 - 48,884,174 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	49,849,389 - 49,886,726 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	49,849,439 - 49,884,151 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	49,164,550 - 49,201,631 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	49,065,265 - 49,102,374 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	49,257,627 - 49,294,727 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Casp8ap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	84,022,998 - 84,049,994 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936510	2,420,920 - 2,447,986 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936510	2,420,924 - 2,447,634 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CASP8AP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	57,835,145 - 57,862,473 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	57,834,251 - 57,864,837 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	64,689,689 - 64,811,590 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CASP8AP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	14,586,857 - 14,632,384 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	14,586,929 - 14,632,362 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	190,973,325 - 191,019,815 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Casp8ap2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624799	4,302,738 - 4,353,211 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Casp8ap2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	110,374,074 - 110,409,934 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Casp8ap2
318 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	62
Count of miRNA genes:	49
Interacting mature miRNAs:	50
Transcripts:	ENSRNOT00000009228
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	32751649	77751649	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	38011670	83011670	Rat
6907115	Mcs29	Mammary carcinoma susceptibility QTL 29			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	38004331	83004331	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	23671493	79046465	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
1300117	Hrtrt8	Heart rate QTL 8	3.49		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	8627230	52665523	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	17576633	62576633	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	48523123	134369373	Rat
1578774	Tcas8	Tongue tumor susceptibility QTL 8	3.47		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	15707451	60707451	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	38011670	83011670	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	38011670	83011670	Rat
1331782	Rf36	Renal function QTL 36	3.296		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	39019942	102105896	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	33311673	78311673	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	32751649	77751649	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	17486080	62486080	Rat
2313085	Bss59	Bone structure and strength QTL 59	2.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	5	8627230	53627230	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	39985948	84985948	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33311673	78311673	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	39526924	84526924	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	14606078	59606078	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	48523123	91770353	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	7065535	74335773	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	17486080	62486080	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	26023211	71023211	Rat
2303577	Gluco47	Glucose level QTL 47	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	16520019	61520019	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	23671493	68671493	Rat

Markers in Region

RH131147

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	47,051,920 - 47,052,170 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	47,890,786 - 47,891,035	NCBI	Rnor6.0
Rnor_5.0	5	52,488,825 - 52,489,074	UniSTS	Rnor5.0
RGSC_v3.4	5	48,957,785 - 48,958,034	UniSTS	RGSC3.4
Celera	5	45,813,066 - 45,813,315	UniSTS
RH 3.4 Map	5	248.0	UniSTS
Cytogenetic Map	5	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000009228 ⟹ ENSRNOP00000009227

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	51,811,025 - 51,848,632 (+)	Ensembl
mRatBN7.2 Ensembl	5	47,014,667 - 47,052,275 (+)	Ensembl
Rnor_6.0 Ensembl	5	47,853,818 - 47,891,127 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079656 ⟹ ENSRNOP00000075576

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	47,853,878 - 47,891,668 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101963 ⟹ ENSRNOP00000085206

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	51,811,025 - 51,848,028 (+)	Ensembl
mRatBN7.2 Ensembl	5	47,014,667 - 47,051,671 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000153566 ⟹ ENSRNOP00000103253

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	51,810,972 - 51,844,909 (+)	Ensembl

RefSeq Acc Id:

NM_001107921 ⟹ NP_001101391

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	51,811,025 - 51,848,632 (+)	NCBI
mRatBN7.2	5	47,014,667 - 47,052,275 (+)	NCBI
Dahl_SR_JrHsd	5	51,932,565 - 51,970,099 (+)	NCBI
Lyon_Normotensive	5	53,336,830 - 53,374,364 (+)	NCBI
Lyon_Hypertensive	5	52,776,804 - 52,812,639 (+)	NCBI
F344_StmMcwi	5	46,652,015 - 46,689,549 (+)	NCBI
Rnor_6.0	5	47,853,818 - 47,891,140 (+)	NCBI
Rnor_5.0	5	52,451,775 - 52,489,186 (+)	NCBI
RGSC_v3.4	5	48,920,175 - 48,958,139 (+)	RGD
Celera	5	45,775,811 - 45,813,420 (+)	RGD

Sequence:

show sequence

CGCGGGGCTGCTGGGGAGAGGCAGCGGGGTGCCGCCTGGGATGGCTTGCGCCGTGGGCGAAGGG
TTGTGCCTGGCTGGGCCTCAAGGAGCCAGCTGCTGTCCTCGGGGACCGCCCTTTGGAGAGTCTC
GAGGGGCTCTGGGGCGAGCACACGGAGCATCGCCCGGTCTACACTGCGCCCCTCCCCTCCCCCA
CCCGTGTCTCCTAGGTCCCTACTTCCGAGCTTTTGATGGCACCTATGAAAAGGATATAGGACCA
TGGCAGCAGATGATGACAATGGTGATGGAACGGGTTTGTTTGATGTCTGTCCTGCCTCTCCTCT
TAAAAATAATGATGAAGGCTCATTGGACATATATGCTGGGTTGGACAGTACTGTTTCTGACAGT
ACTGCTAGGTCCTGCGTGTCGTTCAGAAACTGTCTGGATTTGTATGAAGAGATCCTGACTGAAG
AAGGAACTGCAAAGGAGGCAACATACAGTGACTTGCAGATAGAATATGGGAAATGTCAGCAGCA
AATGAAAGATCTGATGAAAAGATTTAAGGAAATACAGACACAGAACTTGAACTTAAAAAATGAA
AACCAGTCTCTTAAGAAGAATATCTCAGCACTTATCAAAACTGCCAGAGTGGAGATAAACCGTA
AGGATGAAGAGATAAATCATCTTCACCAAAGATTGTCTGAGTTTCCACATTTTCGAAATAACCA
TAAAACTGCAAGAACAAAAGATTCACGATCCAAATCTCCCCATTTGGACAATTGTTCAAAGACT
GATCATGGAGTTAAAAGTGATGTTCAGAAAGATATACATCCTAACACTTCACAACCAAACTTGG
AAAAGGAAGGGAAATCACATTCTGAAGCACAGAATTCTTTGCACTTGTCTACGGGTATTGAGAA
ACATTGTACAAACAATGTCTGGTCACGTTCTCCTTACCAGGTTAGTGAAGGTAACTCAAATGAA
GATAATAGAAGAGGAAGGAATGGCGTCAGACATAGCCAAGGTAGCAGAGGAACTGACAGAACAC
AGAAAGACTTGAATAGCAGCTGTAATGATGGCGAGCCAAGGGACAAAGAGGCTGCTTCCAGACT
ACACGGAAACCCTGAGAAACATGGAAGCAGTGAAGCAAGGGCTGAGAACAAAATTTCAGAGATT
AAAAGTAGCACTGGTTTGGGAAATAAAAGCGAGCGCAGTGCCTCTTCTTGGGAAAAAGAAACTT
CCAGAGAAAGGCCACATACTCGAGTGGAACCTCAAAATGACAAAAATCTAGAGAGACAAAATGA
AAGATTACAAAATACACACAGAAAAGAGCTTCAGTCTCAGGACAAAGCAGAAAGAAAAGGTGAT
GTGAAGTTTAAACCAGCAGGAGAGGAGCAGGGGCATCGGGGAAGAGTGGACCGTGCATTACCTC
CTCATTCCAAGAATGACATGAAATATTATGGCTTCAATAAGTATCATCCAGAAGAGAGAAGGGG
AAGGGAAGATGGTAAACGAGACAGAGGCATGAGCAGTCATGGCTTTCAAGATAGAAGATGTTCA
TCTTCTCTTTCAAGCAACAGAAATAGCAAATACCCACACTCCAAGGAAGTCAGTGTTGCACACC
AGTGGGAAAATACACCTTTCAAAGCAGAAAGACATAGAACTGAGGACAGGAGGAAAAGAGAACG
AGAAAACAAAGAAGAAAGTAGACATGTGAAAAGTGACAAAAAATCACCTCCAGAACACTTGCAA
AGGACTCATAAAGACACTAAGAAAAGTACTGCTAATGGAAAGAGACAGACGGAGCAGAAACACG
GTAAAGGTCCAGTCTCTACCAGCGAGCTTTCTAAAGGGACAGACAATAGAGAGTGTACAATGAA
AGTGGAGAATGGGCCAAATGAAGCAAAGGGCAAGGACTTAAAGTTAAGCTTCATGGAGAAGCTG
AACTTAACTCTTTCTCCTGCTAAAAAGCAGCCTGTTTGTCAAGATAACGAGCATCAAATAATTG
GTGTTCCCAAGCCCAGTGGCGTGTGTGACTCACAGTCCTTGGAGAAGACTGAAACAGTGGCATG
TCTTCCTTCTGTCAGTGAACAAGATAGAGAGGAACCCAAATCAGAGTTACCAGAGCCAAAGGAG
GCTCTTTCAGCAACATCTCAACCCAGGACCAGCATTCCAGAAAATAAAGTGAAGGAAGAAAATA
GATTGTTATTTAAATCTGTTGAGAATACTGTGCCTTGTGAACTGCTTGCTTGTGGCACGGAAAT
TTCCTTCCCAGCACCTGTAGAAATTGAGCAAGCAAGATGTTTGGTCCAATCAATGGAAGTGGAA
GAGACATGTGCTGGTGCAAGGGCAGCTGCTTCTGTGGTGATGCGTGTATTACCAGAACATGCTT
CTGAAGACTTCAGCCAAGAATTGGGCACCAAAAGACATGATGATATAAATTCGTGTGATATTTC
TGAAGGTGGGAAAAAAAAGGTGGTTCTTTCACCAAAAGCAGCAGCAGCCAGTGAGAGCCATCTG
GAGCCTGTGGTTGAAGAACCTAGCATTTCACCAGTAAACTGTTCGGGAGACAATAATCCTAAAC
TTGAACCTTCTCTTGAAGAGAGACCTAAGGTTGAGAATAAATCTTCTCCTTTGGAGCCTTGTTT
ACCTAAAGAGATGTTTGTACCTTCACCACAGAAGACTGAGTTGATTGACCACAAAATAGATACT
GGAGAATCAAACTCGGTATATCAAGATGATGATAACTCAGTTTTGAGTATTGACTTTAATAATT
TGAGACCTATTCCAGAACCCATCAGCCCTCTGAATAGTCCAGTGAGACCGGTATCCAAAGTTCT
TAGCATGGAGAGCTCATGTACAATTCCACTGTATGATAGCAGCCATAAAGATGAGTTTCCATCC
AATTCAACTCTTTCTACCTTCAAGAGTCAGTCTGATCTAAATAAGGAAAATGAAAAACCAGTTC
CCAAATTGGACAAATGTTCAGAAGCAGAATCCTGTAAGAATTTGTCTGTAGATGAATTAGAAGA
AGGGGAAATTAGAAGTGATGATGAAGAATCTGTAGCACAAAAGCGTTTGGAAAAGAGTGCAAGA
CCCAGAACTTCTACTGAAGTGCCGCCAGGTAAAATCAGCCCAGGAAGCAGGAGGAGCACTGTGC
ATGTGCATAAGGATAACGGGAGGACAGTTGTAAAACTCCCTCGGGACAGAATCACATGGAGCCA
AAGATCAAATGAATCTAGACCCTCAAACACCGAAAGGAAAAGTAAAACAATGAGCATCTCCAGC
TTGGAAAAAATACTTCCGCTTATTCTTGCACCCTCCTCCGTATGGGAAGTTATGCATATGTTAC
GGTTGCTAGGAAAACATGTAAGGAAAAATTACATGAAATTCAAGATAAAATTTTCATTGACACA
ATTTCATAGAATTATTGAATCGGCAATTTTGAGTTTCACATCACTAATTAGATACCTTGATTTG
TCTAAGATCTGTAAATCAGTAAGTACTTTACAGAAGAGTCTTTGTGACGTTATAGAATCTAACC
TTAAACAAGTGAAGAAGAATGGCATAGTTGACCGTTTATTTGAACAACAACAAACAGATATGAA
AAAAAAATTGTGGAAGTTTGTGGATGAACAACTTGATTATTTGTTTGAAAAACTTAAAAAAATC
CTACTAAAGTTTTGTGATTCTGTAAAGCATGAAAATGACAGTAGTGAAGGAAAACTTGGAAAAA
AATATAAAGAGAGAGCCCAACATTCAAATTGTCAGAAGAAGAAAATGGACAACAAAGAAATACG
GAGAGAAAAAGTGCTAAAATCAGAAAATACTGTGAATTTTAAATCTTCACTGGGGTGTGAAAAA
TTTGAAGAAAAACATCAAGACCAAAATAAAACCAATACTACTACAGTAAAGCATGATGTGAAAA
GAACTTTTAGCACTTGCACTGATAATAATACAAAGAACTCTGAATGTAAAGAGCAGTTTCTGGG
AATGAACTGCCCGAGTACCCCCAGGCCAGGAGAAACTGAAGGCAATGTGGAGGAGGGGACACCG
GCGGCACAGCACGCCTGCGTTAAGTCAGAGCGGGGCTTTGAGATCCTCACCGAGCAGCAGGCGT
CCAGCCTTACTTTTAACTTAGTGAGTGACGCACAGATGGGTGAGATATTTAAAAGTTTGCTACA
AGGTTCTGATCTGTTGGACACAGGTGGCACTGAAAAAGCGGAGTGGGAATTAAAGACTCCAGAG
AAACAGCTGCTAGAGAGCCTCAAGTGTGAGTCTGCACCAGCTTGTACAACAGAAGAGCTAGTTT
CAGAGGCGGCTTCTCTCTGTCCAAAGGTGATCAGTGATGATAATTGGTCTTTATTATCATCTGA
AAAGGGCCCATCTCTATCTTCAGGGCTTTCACTGCCAGTTCATCCTGATGTGTTAGATGAAAAT
TGTATGTTTGAAGTATCTTCTAACCTTGCTTTAAGTAAAGATAATGTATACAGCTCAGAAAAGA
GTAAGCCCTGCATTTCTTCCATACTCTTAGAAGATCTTGCGGTCTCTTTAACAGTACCGTCACC
TCTGAAGTCAGATGGCCATTTGAGTTTCTTAAAGCCTGAAGTTTTGTCAACTTCAACTCCTGAA
GAAGTTATTAGTGCACATTTTAGTGAGGATGCTTTGCTTGAGGAAGAGGATGCATCTGAACAGG
ACATTCACTTAGCTCTAGAGTCTGATAACTCAAGCAGTAAGTCAAGCTGTTCCTCATGGACAAG
CCGGTCTGTTGCTTCAGGCTTTCAGTACCACCCTAATCTTCCCATGCATGCTGTCATTATGGAA
AAGTCCAATGATCATTTCATTGTGAAAATACGGCGTGCAACACCATCTACCTCCCCTGGCCTTA
AACATGGTATGGTAGCTGAGGAGTCGTTGACACCTTTGCCTAGAACTGGAAAAGAAGCTGATGG
GGCAGCAGAGAAAGAACCTACCCTGTTTCAGAGTACAGTTTTAAACCCTGTCCAAGACTTGGAA
AATTCCGACAAAAGTATTGATAAGAGCAAACCAACTCATGAAGATCAGAACTCTATAGTACAAA
CACAGGTTCCAGATATATACGAATTTCTTAAAGATGCTTCAAATAAGGTGGTTCATTGTGATCA
AGTGGTTGATGATTGCTTCAAGTTGCATCAAGTATGGGAACCAAAAGTTTCTGAGAGCCTTCAA
GAATTGCCTTCAATGGAAAAAAATGCACACTCTGTTGATGATCATCTTCCTAATACACACATAG
ATCTAACAAAAGATCCAGCTACTGAGACTAAAAGCTTGGAGCTAATGGATGTAACAGTTTTAGA
TATCGATCACTTGGAACATTCTAAACCCAACTTAGATCAAGATGCACAGATAACGTGTACTTCG
TTACAGCATGATGCTGTAGATGCTTTTATTGATTTGACACATGATGTTTCAAATGAGAGTAAAA
ACGAAAGTAATGAACCTGTGTTAACTGTTGAAGGTGTGGGATGCCAGGTAATATGTATAGATGA
CGATAACCACAAAGAAGGAAAAGTGGGGAAGGTAAACAGTTCCTTAGAATGTACTGTTGAGGAA
ACCTGTATTGACTTGACCTCAGAGTCTGCTGGCTCCTTTGAAGTAAAGAGACACACTTTAAAGT
CAGAGCCTCCATCAAAGTCGGATTGTTTAGAGTTGCCTGAGACTCTGGGGAATGGTCACAAGAA
GAGAAAGAACAGTCCTGCTGTGAGTCACTCTTCTCAGAAAAAGCAAAGAAAGGACATGGACTTA
AGTAGTGAAAAGACCAAGAGACTTAGTCCTAATTCTGATAGAACTGGTGATGCTCACAGAAAGC
ATGGCAGCAAGAAGAGGGAACCTGCAGTAAGTGACACATCCTTGTCATCAGAGGTCAACCCAGA
GGTGAAGGGCTCAACAGCACCACTTGCTACTTTTCCAGGAAGCCTTTCTGCAAAAAATGTTATC
AAAAAGAAAGGAGAAATTATAGTTTCATGGACAAGAAATGACGACAGGGAAATTTTACTGGAAT
GTCAGAAAAGAATGCCGTCCCTGAAAACATTTACCCACTTGGCTGTCAAACTGAATAAAAATCC
AAATCAGGTTTCAGAGAGGTTCCAGCAACTGAAAAAGCTTTTTGAGAAGTCAAAATGCAGGTAG
TAGTGGGTCCATCGCAGGATGCTAATGCTATGAGTTGCTGGATTTCATGGTGCCTCACTGATAA
TTCTTCTACAAAGAAGCTTCGATTCCTCGTGTTTTAAATGGGGAACTAGGTGGAGGTTTTGTCT
CAGTTTTGGTGACTAGATGATCATCTACCTTTTTTTTACTTTCCTGGTCATTGTGCTTGGCTTA
TTCAGATCAACAGTCTGATTCACTTTCCTGTTATTGGTCAGAATATTTATTTTTAATCATTAAA
AGTTGTTATCAAATGAAAGAATAAAAGCAACCTCAATGTAATACTGAAACCTTAGTTTTGATAT
TGGATGAAATAACTTCTTTAGATTTTAAAAAACAATTTTGTAGCATTTTAAATGTAATGACTAT
TTAGTTCACCTTTCTATTCATTTTTGTTTTTATAATTGCCTCATTTTGGAAAATTGTGAAATAA
TTTAAATAGTATATTTGTATATATGTATAATTATTGTAATGTAAAATACTATGACTGTATGTGT
CTTGAGTGTATGTATGCACATGAATGGCTTTGCTAGCCAAAGGGTTTTTTTATCTATATAAAAT
ATTTTGTATAAACTTTCCTTTCAGTTAGTCATGTATAATAAAAACATGTAAAGTCCTTTTT

hide sequence

RefSeq Acc Id:

XM_006237973 ⟹ XP_006238035

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	51,810,923 - 51,848,633 (+)	NCBI
mRatBN7.2	5	47,014,501 - 47,052,276 (+)	NCBI
Rnor_6.0	5	47,853,699 - 47,891,147 (+)	NCBI
Rnor_5.0	5	52,451,775 - 52,489,186 (+)	NCBI

Sequence:

show sequence

CGGTCCCGCCCTGGCGTCCTTACTGCGGGCTGGGATTGGTGGAGACGGCCGAGCGCCTGGCGTC
CGGACAGCGGCCGCTGTGCGGGGCTGGCCGGCCGGAATGTGAAGAAACCGAGGCTTAAGCCCTT
GTGAGACAAAGTCTGGCTGTATTGAGAGAAAAGATGGCACCTATGAAAAGGATATAGGACCATG
GCAGCAGATGATGACAATGGTGATGGAACGGGTTTGTTTGATGTCTGTCCTGCCTCTCCTCTTA
AAAATAATGATGAAGGCTCATTGGACATATATGCTGGGTTGGACAGTACTGTTTCTGACAGTAC
TGCTAGGTCCTGCGTGTCGTTCAGAAACTGTCTGGATTTGTATGAAGAGATCCTGACTGAAGAA
GGAACTGCAAAGGAGGCAACATACAGTGACTTGCAGATAGAATATGGGAAATGTCAGCAGCAAA
TGAAAGATCTGATGAAAAGATTTAAGGAAATACAGACACAGAACTTGAACTTAAAAAATGAAAA
CCAGTCTCTTAAGAAGAATATCTCAGCACTTATCAAAACTGCCAGAGTGGAGATAAACCGTAAG
GATGAAGAGATAAATCATCTTCACCAAAGATTGTCTGAGTTTCCACATTTTCGAAATAACCATA
AAACTGCAAGAACAAAAGATTCACGATCCAAATCTCCCCATTTGGACAATTGTTCAAAGACTGA
TCATGGAGTTAAAAGTGATGTTCAGAAAGATATACATCCTAACACTTCACAACCAAACTTGGAA
AAGGAAGGGAAATCACATTCTGAAGCACAGAATTCTTTGCACTTGTCTACGGGTATTGAGAAAC
ATTGTACAAACAATGTCTGGTCACGTTCTCCTTACCAGGTTAGTGAAGGTAACTCAAATGAAGA
TAATAGAAGAGGAAGGAATGGCGTCAGACATAGCCAAGGTAGCAGAGGAACTGACAGAACACAG
AAAGACTTGAATAGCAGCTGTAATGATGGCGAGCCAAGGGACAAAGAGGCTGCTTCCAGACTAC
ACGGAAACCCTGAGAAACATGGAAGCAGTGAAGCAAGGGCTGAGAACAAAATTTCAGAGATTAA
AAGTAGCACTGGTTTGGGAAATAAAAGCGAGCGCAGTGCCTCTTCTTGGGAAAAAGAAACTTCC
AGAGAAAGGCCACATACTCGAGTGGAACCTCAAAATGACAAAAATCTAGAGAGACAAAATGAAA
GATTACAAAATACACACAGAAAAGAGCTTCAGTCTCAGGACAAAGCAGAAAGAAAAGGTGATGT
GAAGTTTAAACCAGCAGGAGAGGAGCAGGGGCATCGGGGAAGAGTGGACCGTGCATTACCTCCT
CATTCCAAGAATGACATGAAATATTATGGCTTCAATAAGTATCATCCAGAAGAGAGAAGGGGAA
GGGAAGATGGTAAACGAGACAGAGGCATGAGCAGTCATGGCTTTCAAGATAGAAGATGTTCATC
TTCTCTTTCAAGCAACAGAAATAGCAAATACCCACACTCCAAGGAAGTCAGTGTTGCACACCAG
TGGGAAAATACACCTTTCAAAGCAGAAAGACATAGAACTGAGGACAGGAGGAAAAGAGAACGAG
AAAACAAAGAAGAAAGTAGACATGTGAAAAGTGACAAAAAATCACCTCCAGAACACTTGCAAAG
GACTCATAAAGACACTAAGAAAAGTACTGCTAATGGAAAGAGACAGACGGAGCAGAAACACGGT
AAAGGTCCAGTCTCTACCAGCGAGCTTTCTAAAGGGACAGACAATAGAGAGTGTACAATGAAAG
TGGAGAATGGGCCAAATGAAGCAAAGGGCAAGGACTTAAAGTTAAGCTTCATGGAGAAGCTGAA
CTTAACTCTTTCTCCTGCTAAAAAGCAGCCTGTTTGTCAAGATAACGAGCATCAAATAATTGGT
GTTCCCAAGCCCAGTGGCGTGTGTGACTCACAGTCCTTGGAGAAGACTGAAACAGTGGCATGTC
TTCCTTCTGTCAGTGAACAAGATAGAGAGGAACCCAAATCAGAGTTACCAGAGCCAAAGGAGGC
TCTTTCAGCAACATCTCAACCCAGGACCAGCATTCCAGAAAATAAAGTGAAGGAAGAAAATAGA
TTGTTATTTAAATCTGTTGAGAATACTGTGCCTTGTGAACTGCTTGCTTGTGGCACGGAAATTT
CCTTCCCAGCACCTGTAGAAATTGAGCAAGCAAGATGTTTGGTCCAATCAATGGAAGTGGAAGA
GACATGTGCTGGTGCAAGGGCAGCTGCTTCTGTGGTGATGCGTGTATTACCAGAACATGCTTCT
GAAGACTTCAGCCAAGAATTGGGCACCAAAAGACATGATGATATAAATTCGTGTGATATTTCTG
AAGGTGGGAAAAAAAAGGTGGTTCTTTCACCAAAAGCAGCAGCAGCCAGTGAGAGCCATCTGGA
GCCTGTGGTTGAAGAACCTAGCATTTCACCAGTAAACTGTTCGGGAGACAATAATCCTAAACTT
GAACCTTCTCTTGAAGAGAGACCTAAGGTTGAGAATAAATCTTCTCCTTTGGAGCCTTGTTTAC
CTAAAGAGATGTTTGTACCTTCACCACAGAAGACTGAGTTGATTGACCACAAAATAGATACTGG
AGAATCAAACTCGGTATATCAAGATGATGATAACTCAGTTTTGAGTATTGACTTTAATAATTTG
AGACCTATTCCAGAACCCATCAGCCCTCTGAATAGTCCAGTGAGACCGGTATCCAAAGTTCTTA
GCATGGAGAGCTCATGTACAATTCCACTGTATGATAGCAGCCATAAAGATGAGTTTCCATCCAA
TTCAACTCTTTCTACCTTCAAGAGTCAGTCTGATCTAAATAAGGAAAATGAAAAACCAGTTCCC
AAATTGGACAAATGTTCAGAAGCAGAATCCTGTAAGAATTTGTCTGTAGATGAATTAGAAGAAG
GGGAAATTAGAAGTGATGATGAAGAATCTGTAGCACAAAAGCGTTTGGAAAAGAGTGCAAGACC
CAGAACTTCTACTGAAGTGCCGCCAGGTAAAATCAGCCCAGGAAGCAGGAGGAGCACTGTGCAT
GTGCATAAGGATAACGGGAGGACAGTTGTAAAACTCCCTCGGGACAGAATCACATGGAGCCAAA
GATCAAATGAATCTAGACCCTCAAACACCGAAAGGAAAAGTAAAACAATGAGCATCTCCAGCTT
GGAAAAAATACTTCCGCTTATTCTTGCACCCTCCTCCGTATGGGAAGTTATGCATATGTTACGG
TTGCTAGGAAAACATGTAAGGAAAAATTACATGAAATTCAAGATAAAATTTTCATTGACACAAT
TTCATAGAATTATTGAATCGGCAATTTTGAGTTTCACATCACTAATTAGATACCTTGATTTGTC
TAAGATCTGTAAATCAGTAAGTACTTTACAGAAGAGTCTTTGTGACGTTATAGAATCTAACCTT
AAACAAGTGAAGAAGAATGGCATAGTTGACCGTTTATTTGAACAACAACAAACAGATATGAAAA
AAAAATTGTGGAAGTTTGTGGATGAACAACTTGATTATTTGTTTGAAAAACTTAAAAAAATCCT
ACTAAAGTTTTGTGATTCTGTAAAGCATGAAAATGACAGTAGTGAAGGAAAACTTGGAAAAAAA
TATAAAGAGAGAGCCCAACATTCAAATTGTCAGAAGAAGAAAATGGACAACAAAGAAATACGGA
GAGAAAAAGTGCTAAAATCAGAAAATACTGTGAATTTTAAATCTTCACTGGGGTGTGAAAAATT
TGAAGAAAAACATCAAGACCAAAATAAAACCAATACTACTACAGTAAAGCATGATGTGAAAAGA
ACTTTTAGCACTTGCACTGATAATAATACAAAGAACTCTGAATGTAAAGAGCAGTTTCTGGGAA
TGAACTGCCCGAGTACCCCCAGGCCAGGAGAAACTGAAGGCAATGTGGAGGAGGGGACACCGGC
GGCACAGCACGCCTGCGTTAAGTCAGAGCGGGGCTTTGAGATCCTCACCGAGCAGCAGGCGTCC
AGCCTTACTTTTAACTTAGTGAGTGACGCACAGATGGGTGAGATATTTAAAAGTTTGCTACAAG
GTTCTGATCTGTTGGACACAGGTGGCACTGAAAAAGCGGAGTGGGAATTAAAGACTCCAGAGAA
ACAGCTGCTAGAGAGCCTCAAGTGTGAGTCTGCACCAGCTTGTACAACAGAAGAGCTAGTTTCA
GAGGCGGCTTCTCTCTGTCCAAAGGTGATCAGTGATGATAATTGGTCTTTATTATCATCTGAAA
AGGGCCCATCTCTATCTTCAGGGCTTTCACTGCCAGTTCATCCTGATGTGTTAGATGAAAATTG
TATGTTTGAAGTATCTTCTAACCTTGCTTTAAGTAAAGATAATGTATACAGCTCAGAAAAGAGT
AAGCCCTGCATTTCTTCCATACTCTTAGAAGATCTTGCGGTCTCTTTAACAGTACCGTCACCTC
TGAAGTCAGATGGCCATTTGAGTTTCTTAAAGCCTGAAGTTTTGTCAACTTCAACTCCTGAAGA
AGTTATTAGTGCACATTTTAGTGAGGATGCTTTGCTTGAGGAAGAGGATGCATCTGAACAGGAC
ATTCACTTAGCTCTAGAGTCTGATAACTCAAGCAGTAAGTCAAGCTGTTCCTCATGGACAAGCC
GGTCTGTTGCTTCAGGCTTTCAGTACCACCCTAATCTTCCCATGCATGCTGTCATTATGGAAAA
GTCCAATGATCATTTCATTGTGAAAATACGGCGTGCAACACCATCTACCTCCCCTGGCCTTAAA
CATGGTATGGTAGCTGAGGAGTCGTTGACACCTTTGCCTAGAACTGGAAAAGAAGCTGATGGGG
CAGCAGAGAAAGAACCTACCCTGTTTCAGAGTACAGTTTTAAACCCTGTCCAAGACTTGGAAAA
TTCCGACAAAAGTATTGATAAGAGCAAACCAACTCATGAAGATCAGAACTCTATAGTACAAACA
CAGGTTCCAGATATATACGAATTTCTTAAAGATGCTTCAAATAAGGTGGTTCATTGTGATCAAG
TGGTTGATGATTGCTTCAAGTTGCATCAAGTATGGGAACCAAAAGTTTCTGAGAGCCTTCAAGA
ATTGCCTTCAATGGAAAAAAATGCACACTCTGTTGATGATCATCTTCCTAATACACACATAGAT
CTAACAAAAGATCCAGCTACTGAGACTAAAAGCTTGGAGCTAATGGATGTAACAGTTTTAGATA
TCGATCACTTGGAACATTCTAAACCCAACTTAGATCAAGATGCACAGATAACGTGTACTTCGTT
ACAGCATGATGCTGTAGATGCTTTTATTGATTTGACACATGATGTTTCAAATGAGAGTAAAAAC
GAAAGTAATGAACCTGTGTTAACTGTTGAAGGTGTGGGATGCCAGGTAATATGTATAGATGACG
ATAACCACAAAGAAGGAAAAGTGGGGAAGGTAAACAGTTCCTTAGAATGTACTGTTGAGGAAAC
CTGTATTGACTTGACCTCAGAGTCTGCTGGCTCCTTTGAAGTAAAGAGACACACTTTAAAGTCA
GAGCCTCCATCAAAGTCGGATTGTTTAGAGTTGCCTGAGACTCTGGGGAATGGTCACAAGAAGA
GAAAGAACAGTCCTGCTGTGAGTCACTCTTCTCAGAAAAAGCAAAGAAAGGACATGGACTTAAG
TAGTGAAAAGACCAAGAGACTTAGTCCTAATTCTGATAGAACTGGTGATGCTCACAGAAAGCAT
GGCAGCAAGAAGAGGGAACCTGCAGTAAGTGACACATCCTTGTCATCAGAGGTCAACCCAGAGG
TGAAGGGCTCAACAGCACCACTTGCTACTTTTCCAGGAAGCCTTTCTGCAAAAAATGTTATCAA
AAAGAAAGGAGAAATTATAGTTTCATGGACAAGAAATGACGACAGGGAAATTTTACTGGAATGT
CAGAAAAGAATGCCGTCCCTGAAAACATTTACCCACTTGGCTGTCAAACTGAATAAAAATCCAA
ATCAGGTTTCAGAGAGGTTCCAGCAACTGAAAAAGCTTTTTGAGAAGTCAAAATGCAGGTAGTA
GTGGGTCCATCGCAGGATGCTAATGCTATGAGTTGCTGGATTTCATGGTGCCTCACTGATAATT
CTTCTACAAAGAAGCTTCGATTCCTCGTGTTTTAAATGGGGAACTAGGTGGAGGTTTTGTCTCA
GTTTTGGTGACTAGATGATCATCTACCTTTTTTTTACTTTCCTGGTCATTGTGCTTGGCTTATT
CAGATCAACAGTCTGATTCACTTTCCTGTTATTGGTCAGAATATTTATTTTTAATCATTAAAAG
TTGTTATCAAATGAAAGAATAAAAGCAACCTCAATGTAATACTGAAACCTTAGTTTTGATATTG
GATGAAATAACTTCTTTAGATTTTAAAAAACAATTTTGTAGCATTTTAAATGTAATGACTATTT
AGTTCACCTTTCTATTCATTTTTGTTTTTATAATTGCCTCATTTTGGAAAATTGTGAAATAATT
TAAATAGTATATTTGTATATATGTATAATTATTGTAATGTAAAATACTATGACTGTATGTGTCT
TGAGTGTATGTATGCACATGAATGGCTTTGCTAGCCAAAGGGTTTTTTTATCTATATAAAATAT
TTTGTATAAACTTTCCTTTCAGTTAGTCATGTATAATAAAAACATGTAAAGTCCTTTTTATTTT
TA

hide sequence

RefSeq Acc Id:

XM_006237974 ⟹ XP_006238036

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	51,810,995 - 51,848,633 (+)	NCBI
mRatBN7.2	5	47,014,653 - 47,052,276 (+)	NCBI
Rnor_6.0	5	47,853,804 - 47,891,147 (+)	NCBI
Rnor_5.0	5	52,451,775 - 52,489,186 (+)	NCBI

Sequence:

show sequence

TCCTGAGGGCCTGTCGCGGGGCTGCTGGGGAGAGGCAGCGGGGTGCCGCCTGGGATGGCTTGCG
CCGTGGGCGAAGGGTTGTGCCTGGCTGGGCCTCAAGGAGCCAGCTGCTGTCCTCGGGGACCGCC
CTTTGGAGAGTCTCGAGGGGCTCTGGGGCGAGCACACGGAGCATCGCCCGGTCTACACTGCGCC
CCTCCCCTCCCCCACCCGTGTCTCCTAGGTCCCTACTTCCGAGCTTTTGAATGTGAAGAAACCG
AGGCTTAAGCCCTTGTGAGACAAAGTCTGGCTGTATTGAGAGAAAAGATGGCACCTATGAAAAG
GATATAGGACCATGGCAGCAGATGATGACAATGGTGATGGAACGGGTTTGTTTGATGTCTGTCC
TGCCTCTCCTCTTAAAAATAATGATGAAGGCTCATTGGACATATATGCTGGGTTGGACAGTACT
GTTTCTGACAGTACTGCTAGGTCCTGCGTGTCGTTCAGAAACTGTCTGGATTTGTATGAAGAGA
TCCTGACTGAAGAAGGAACTGCAAAGGAGGCAACATACAGTGACTTGCAGATAGAATATGGGAA
ATGTCAGCAGCAAATGAAAGATCTGATGAAAAGATTTAAGGAAATACAGACACAGAACTTGAAC
TTAAAAAATGAAAACCAGTCTCTTAAGAAGAATATCTCAGCACTTATCAAAACTGCCAGAGTGG
AGATAAACCGTAAGGATGAAGAGATAAATCATCTTCACCAAAGATTGTCTGAGTTTCCACATTT
TCGAAATAACCATAAAACTGCAAGAACAAAAGATTCACGATCCAAATCTCCCCATTTGGACAAT
TGTTCAAAGACTGATCATGGAGTTAAAAGTGATGTTCAGAAAGATATACATCCTAACACTTCAC
AACCAAACTTGGAAAAGGAAGGGAAATCACATTCTGAAGCACAGAATTCTTTGCACTTGTCTAC
GGGTATTGAGAAACATTGTACAAACAATGTCTGGTCACGTTCTCCTTACCAGGTTAGTGAAGGT
AACTCAAATGAAGATAATAGAAGAGGAAGGAATGGCGTCAGACATAGCCAAGGTAGCAGAGGAA
CTGACAGAACACAGAAAGACTTGAATAGCAGCTGTAATGATGGCGAGCCAAGGGACAAAGAGGC
TGCTTCCAGACTACACGGAAACCCTGAGAAACATGGAAGCAGTGAAGCAAGGGCTGAGAACAAA
ATTTCAGAGATTAAAAGTAGCACTGGTTTGGGAAATAAAAGCGAGCGCAGTGCCTCTTCTTGGG
AAAAAGAAACTTCCAGAGAAAGGCCACATACTCGAGTGGAACCTCAAAATGACAAAAATCTAGA
GAGACAAAATGAAAGATTACAAAATACACACAGAAAAGAGCTTCAGTCTCAGGACAAAGCAGAA
AGAAAAGGTGATGTGAAGTTTAAACCAGCAGGAGAGGAGCAGGGGCATCGGGGAAGAGTGGACC
GTGCATTACCTCCTCATTCCAAGAATGACATGAAATATTATGGCTTCAATAAGTATCATCCAGA
AGAGAGAAGGGGAAGGGAAGATGGTAAACGAGACAGAGGCATGAGCAGTCATGGCTTTCAAGAT
AGAAGATGTTCATCTTCTCTTTCAAGCAACAGAAATAGCAAATACCCACACTCCAAGGAAGTCA
GTGTTGCACACCAGTGGGAAAATACACCTTTCAAAGCAGAAAGACATAGAACTGAGGACAGGAG
GAAAAGAGAACGAGAAAACAAAGAAGAAAGTAGACATGTGAAAAGTGACAAAAAATCACCTCCA
GAACACTTGCAAAGGACTCATAAAGACACTAAGAAAAGTACTGCTAATGGAAAGAGACAGACGG
AGCAGAAACACGGTAAAGGTCCAGTCTCTACCAGCGAGCTTTCTAAAGGGACAGACAATAGAGA
GTGTACAATGAAAGTGGAGAATGGGCCAAATGAAGCAAAGGGCAAGGACTTAAAGTTAAGCTTC
ATGGAGAAGCTGAACTTAACTCTTTCTCCTGCTAAAAAGCAGCCTGTTTGTCAAGATAACGAGC
ATCAAATAATTGGTGTTCCCAAGCCCAGTGGCGTGTGTGACTCACAGTCCTTGGAGAAGACTGA
AACAGTGGCATGTCTTCCTTCTGTCAGTGAACAAGATAGAGAGGAACCCAAATCAGAGTTACCA
GAGCCAAAGGAGGCTCTTTCAGCAACATCTCAACCCAGGACCAGCATTCCAGAAAATAAAGTGA
AGGAAGAAAATAGATTGTTATTTAAATCTGTTGAGAATACTGTGCCTTGTGAACTGCTTGCTTG
TGGCACGGAAATTTCCTTCCCAGCACCTGTAGAAATTGAGCAAGCAAGATGTTTGGTCCAATCA
ATGGAAGTGGAAGAGACATGTGCTGGTGCAAGGGCAGCTGCTTCTGTGGTGATGCGTGTATTAC
CAGAACATGCTTCTGAAGACTTCAGCCAAGAATTGGGCACCAAAAGACATGATGATATAAATTC
GTGTGATATTTCTGAAGGTGGGAAAAAAAAGGTGGTTCTTTCACCAAAAGCAGCAGCAGCCAGT
GAGAGCCATCTGGAGCCTGTGGTTGAAGAACCTAGCATTTCACCAGTAAACTGTTCGGGAGACA
ATAATCCTAAACTTGAACCTTCTCTTGAAGAGAGACCTAAGGTTGAGAATAAATCTTCTCCTTT
GGAGCCTTGTTTACCTAAAGAGATGTTTGTACCTTCACCACAGAAGACTGAGTTGATTGACCAC
AAAATAGATACTGGAGAATCAAACTCGGTATATCAAGATGATGATAACTCAGTTTTGAGTATTG
ACTTTAATAATTTGAGACCTATTCCAGAACCCATCAGCCCTCTGAATAGTCCAGTGAGACCGGT
ATCCAAAGTTCTTAGCATGGAGAGCTCATGTACAATTCCACTGTATGATAGCAGCCATAAAGAT
GAGTTTCCATCCAATTCAACTCTTTCTACCTTCAAGAGTCAGTCTGATCTAAATAAGGAAAATG
AAAAACCAGTTCCCAAATTGGACAAATGTTCAGAAGCAGAATCCTGTAAGAATTTGTCTGTAGA
TGAATTAGAAGAAGGGGAAATTAGAAGTGATGATGAAGAATCTGTAGCACAAAAGCGTTTGGAA
AAGAGTGCAAGACCCAGAACTTCTACTGAAGTGCCGCCAGGTAAAATCAGCCCAGGAAGCAGGA
GGAGCACTGTGCATGTGCATAAGGATAACGGGAGGACAGTTGTAAAACTCCCTCGGGACAGAAT
CACATGGAGCCAAAGATCAAATGAATCTAGACCCTCAAACACCGAAAGGAAAAGTAAAACAATG
AGCATCTCCAGCTTGGAAAAAATACTTCCGCTTATTCTTGCACCCTCCTCCGTATGGGAAGTTA
TGCATATGTTACGGTTGCTAGGAAAACATGTAAGGAAAAATTACATGAAATTCAAGATAAAATT
TTCATTGACACAATTTCATAGAATTATTGAATCGGCAATTTTGAGTTTCACATCACTAATTAGA
TACCTTGATTTGTCTAAGATCTGTAAATCAGTAAGTACTTTACAGAAGAGTCTTTGTGACGTTA
TAGAATCTAACCTTAAACAAGTGAAGAAGAATGGCATAGTTGACCGTTTATTTGAACAACAACA
AACAGATATGAAAAAAAAATTGTGGAAGTTTGTGGATGAACAACTTGATTATTTGTTTGAAAAA
CTTAAAAAAATCCTACTAAAGTTTTGTGATTCTGTAAAGCATGAAAATGACAGTAGTGAAGGAA
AACTTGGAAAAAAATATAAAGAGAGAGCCCAACATTCAAATTGTCAGAAGAAGAAAATGGACAA
CAAAGAAATACGGAGAGAAAAAGTGCTAAAATCAGAAAATACTGTGAATTTTAAATCTTCACTG
GGGTGTGAAAAATTTGAAGAAAAACATCAAGACCAAAATAAAACCAATACTACTACAGTAAAGC
ATGATGTGAAAAGAACTTTTAGCACTTGCACTGATAATAATACAAAGAACTCTGAATGTAAAGA
GCAGTTTCTGGGAATGAACTGCCCGAGTACCCCCAGGCCAGGAGAAACTGAAGGCAATGTGGAG
GAGGGGACACCGGCGGCACAGCACGCCTGCGTTAAGTCAGAGCGGGGCTTTGAGATCCTCACCG
AGCAGCAGGCGTCCAGCCTTACTTTTAACTTAGTGAGTGACGCACAGATGGGTGAGATATTTAA
AAGTTTGCTACAAGGTTCTGATCTGTTGGACACAGGTGGCACTGAAAAAGCGGAGTGGGAATTA
AAGACTCCAGAGAAACAGCTGCTAGAGAGCCTCAAGTGTGAGTCTGCACCAGCTTGTACAACAG
AAGAGCTAGTTTCAGAGGCGGCTTCTCTCTGTCCAAAGGTGATCAGTGATGATAATTGGTCTTT
ATTATCATCTGAAAAGGGCCCATCTCTATCTTCAGGGCTTTCACTGCCAGTTCATCCTGATGTG
TTAGATGAAAATTGTATGTTTGAAGTATCTTCTAACCTTGCTTTAAGTAAAGATAATGTATACA
GCTCAGAAAAGAGTAAGCCCTGCATTTCTTCCATACTCTTAGAAGATCTTGCGGTCTCTTTAAC
AGTACCGTCACCTCTGAAGTCAGATGGCCATTTGAGTTTCTTAAAGCCTGAAGTTTTGTCAACT
TCAACTCCTGAAGAAGTTATTAGTGCACATTTTAGTGAGGATGCTTTGCTTGAGGAAGAGGATG
CATCTGAACAGGACATTCACTTAGCTCTAGAGTCTGATAACTCAAGCAGTAAGTCAAGCTGTTC
CTCATGGACAAGCCGGTCTGTTGCTTCAGGCTTTCAGTACCACCCTAATCTTCCCATGCATGCT
GTCATTATGGAAAAGTCCAATGATCATTTCATTGTGAAAATACGGCGTGCAACACCATCTACCT
CCCCTGGCCTTAAACATGGTATGGTAGCTGAGGAGTCGTTGACACCTTTGCCTAGAACTGGAAA
AGAAGCTGATGGGGCAGCAGAGAAAGAACCTACCCTGTTTCAGAGTACAGTTTTAAACCCTGTC
CAAGACTTGGAAAATTCCGACAAAAGTATTGATAAGAGCAAACCAACTCATGAAGATCAGAACT
CTATAGTACAAACACAGGTTCCAGATATATACGAATTTCTTAAAGATGCTTCAAATAAGGTGGT
TCATTGTGATCAAGTGGTTGATGATTGCTTCAAGTTGCATCAAGTATGGGAACCAAAAGTTTCT
GAGAGCCTTCAAGAATTGCCTTCAATGGAAAAAAATGCACACTCTGTTGATGATCATCTTCCTA
ATACACACATAGATCTAACAAAAGATCCAGCTACTGAGACTAAAAGCTTGGAGCTAATGGATGT
AACAGTTTTAGATATCGATCACTTGGAACATTCTAAACCCAACTTAGATCAAGATGCACAGATA
ACGTGTACTTCGTTACAGCATGATGCTGTAGATGCTTTTATTGATTTGACACATGATGTTTCAA
ATGAGAGTAAAAACGAAAGTAATGAACCTGTGTTAACTGTTGAAGGTGTGGGATGCCAGGTAAT
ATGTATAGATGACGATAACCACAAAGAAGGAAAAGTGGGGAAGGTAAACAGTTCCTTAGAATGT
ACTGTTGAGGAAACCTGTATTGACTTGACCTCAGAGTCTGCTGGCTCCTTTGAAGTAAAGAGAC
ACACTTTAAAGTCAGAGCCTCCATCAAAGTCGGATTGTTTAGAGTTGCCTGAGACTCTGGGGAA
TGGTCACAAGAAGAGAAAGAACAGTCCTGCTGTGAGTCACTCTTCTCAGAAAAAGCAAAGAAAG
GACATGGACTTAAGTAGTGAAAAGACCAAGAGACTTAGTCCTAATTCTGATAGAACTGGTGATG
CTCACAGAAAGCATGGCAGCAAGAAGAGGGAACCTGCAGTAAGTGACACATCCTTGTCATCAGA
GGTCAACCCAGAGGTGAAGGGCTCAACAGCACCACTTGCTACTTTTCCAGGAAGCCTTTCTGCA
AAAAATGTTATCAAAAAGAAAGGAGAAATTATAGTTTCATGGACAAGAAATGACGACAGGGAAA
TTTTACTGGAATGTCAGAAAAGAATGCCGTCCCTGAAAACATTTACCCACTTGGCTGTCAAACT
GAATAAAAATCCAAATCAGGTTTCAGAGAGGTTCCAGCAACTGAAAAAGCTTTTTGAGAAGTCA
AAATGCAGGTAGTAGTGGGTCCATCGCAGGATGCTAATGCTATGAGTTGCTGGATTTCATGGTG
CCTCACTGATAATTCTTCTACAAAGAAGCTTCGATTCCTCGTGTTTTAAATGGGGAACTAGGTG
GAGGTTTTGTCTCAGTTTTGGTGACTAGATGATCATCTACCTTTTTTTTACTTTCCTGGTCATT
GTGCTTGGCTTATTCAGATCAACAGTCTGATTCACTTTCCTGTTATTGGTCAGAATATTTATTT
TTAATCATTAAAAGTTGTTATCAAATGAAAGAATAAAAGCAACCTCAATGTAATACTGAAACCT
TAGTTTTGATATTGGATGAAATAACTTCTTTAGATTTTAAAAAACAATTTTGTAGCATTTTAAA
TGTAATGACTATTTAGTTCACCTTTCTATTCATTTTTGTTTTTATAATTGCCTCATTTTGGAAA
ATTGTGAAATAATTTAAATAGTATATTTGTATATATGTATAATTATTGTAATGTAAAATACTAT
GACTGTATGTGTCTTGAGTGTATGTATGCACATGAATGGCTTTGCTAGCCAAAGGGTTTTTTTA
TCTATATAAAATATTTTGTATAAACTTTCCTTTCAGTTAGTCATGTATAATAAAAACATGTAAA
GTCCTTTTTATTTTTA

hide sequence

RefSeq Acc Id:

XM_006237975 ⟹ XP_006238037

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	51,809,366 - 51,848,633 (+)	NCBI
mRatBN7.2	5	47,014,581 - 47,052,276 (+)	NCBI
Rnor_6.0	5	47,853,743 - 47,891,147 (+)	NCBI
Rnor_5.0	5	52,451,775 - 52,489,186 (+)	NCBI

Sequence:

show sequence

ACGGCCGAGCGCCTGGCGTCCGGACAGCGGCCGCTGTGCGGGGCTGGCCGGCCGGATGGCACCT
ATGAAAAGGATATAGGACCATGGCAGCAGATGATGACAATGGTGATGGAACGGGTTTGTTTGAT
GTCTGTCCTGCCTCTCCTCTTAAAAATAATGATGAAGGCTCATTGGACATATATGCTGGGTTGG
ACAGTACTGTTTCTGACAGTACTGCTAGGTCCTGCGTGTCGTTCAGAAACTGTCTGGATTTGTA
TGAAGAGATCCTGACTGAAGAAGGAACTGCAAAGGAGGCAACATACAGTGACTTGCAGATAGAA
TATGGGAAATGTCAGCAGCAAATGAAAGATCTGATGAAAAGATTTAAGGAAATACAGACACAGA
ACTTGAACTTAAAAAATGAAAACCAGTCTCTTAAGAAGAATATCTCAGCACTTATCAAAACTGC
CAGAGTGGAGATAAACCGTAAGGATGAAGAGATAAATCATCTTCACCAAAGATTGTCTGAGTTT
CCACATTTTCGAAATAACCATAAAACTGCAAGAACAAAAGATTCACGATCCAAATCTCCCCATT
TGGACAATTGTTCAAAGACTGATCATGGAGTTAAAAGTGATGTTCAGAAAGATATACATCCTAA
CACTTCACAACCAAACTTGGAAAAGGAAGGGAAATCACATTCTGAAGCACAGAATTCTTTGCAC
TTGTCTACGGGTATTGAGAAACATTGTACAAACAATGTCTGGTCACGTTCTCCTTACCAGGTTA
GTGAAGGTAACTCAAATGAAGATAATAGAAGAGGAAGGAATGGCGTCAGACATAGCCAAGGTAG
CAGAGGAACTGACAGAACACAGAAAGACTTGAATAGCAGCTGTAATGATGGCGAGCCAAGGGAC
AAAGAGGCTGCTTCCAGACTACACGGAAACCCTGAGAAACATGGAAGCAGTGAAGCAAGGGCTG
AGAACAAAATTTCAGAGATTAAAAGTAGCACTGGTTTGGGAAATAAAAGCGAGCGCAGTGCCTC
TTCTTGGGAAAAAGAAACTTCCAGAGAAAGGCCACATACTCGAGTGGAACCTCAAAATGACAAA
AATCTAGAGAGACAAAATGAAAGATTACAAAATACACACAGAAAAGAGCTTCAGTCTCAGGACA
AAGCAGAAAGAAAAGGTGATGTGAAGTTTAAACCAGCAGGAGAGGAGCAGGGGCATCGGGGAAG
AGTGGACCGTGCATTACCTCCTCATTCCAAGAATGACATGAAATATTATGGCTTCAATAAGTAT
CATCCAGAAGAGAGAAGGGGAAGGGAAGATGGTAAACGAGACAGAGGCATGAGCAGTCATGGCT
TTCAAGATAGAAGATGTTCATCTTCTCTTTCAAGCAACAGAAATAGCAAATACCCACACTCCAA
GGAAGTCAGTGTTGCACACCAGTGGGAAAATACACCTTTCAAAGCAGAAAGACATAGAACTGAG
GACAGGAGGAAAAGAGAACGAGAAAACAAAGAAGAAAGTAGACATGTGAAAAGTGACAAAAAAT
CACCTCCAGAACACTTGCAAAGGACTCATAAAGACACTAAGAAAAGTACTGCTAATGGAAAGAG
ACAGACGGAGCAGAAACACGGTAAAGGTCCAGTCTCTACCAGCGAGCTTTCTAAAGGGACAGAC
AATAGAGAGTGTACAATGAAAGTGGAGAATGGGCCAAATGAAGCAAAGGGCAAGGACTTAAAGT
TAAGCTTCATGGAGAAGCTGAACTTAACTCTTTCTCCTGCTAAAAAGCAGCCTGTTTGTCAAGA
TAACGAGCATCAAATAATTGGTGTTCCCAAGCCCAGTGGCGTGTGTGACTCACAGTCCTTGGAG
AAGACTGAAACAGTGGCATGTCTTCCTTCTGTCAGTGAACAAGATAGAGAGGAACCCAAATCAG
AGTTACCAGAGCCAAAGGAGGCTCTTTCAGCAACATCTCAACCCAGGACCAGCATTCCAGAAAA
TAAAGTGAAGGAAGAAAATAGATTGTTATTTAAATCTGTTGAGAATACTGTGCCTTGTGAACTG
CTTGCTTGTGGCACGGAAATTTCCTTCCCAGCACCTGTAGAAATTGAGCAAGCAAGATGTTTGG
TCCAATCAATGGAAGTGGAAGAGACATGTGCTGGTGCAAGGGCAGCTGCTTCTGTGGTGATGCG
TGTATTACCAGAACATGCTTCTGAAGACTTCAGCCAAGAATTGGGCACCAAAAGACATGATGAT
ATAAATTCGTGTGATATTTCTGAAGGTGGGAAAAAAAAGGTGGTTCTTTCACCAAAAGCAGCAG
CAGCCAGTGAGAGCCATCTGGAGCCTGTGGTTGAAGAACCTAGCATTTCACCAGTAAACTGTTC
GGGAGACAATAATCCTAAACTTGAACCTTCTCTTGAAGAGAGACCTAAGGTTGAGAATAAATCT
TCTCCTTTGGAGCCTTGTTTACCTAAAGAGATGTTTGTACCTTCACCACAGAAGACTGAGTTGA
TTGACCACAAAATAGATACTGGAGAATCAAACTCGGTATATCAAGATGATGATAACTCAGTTTT
GAGTATTGACTTTAATAATTTGAGACCTATTCCAGAACCCATCAGCCCTCTGAATAGTCCAGTG
AGACCGGTATCCAAAGTTCTTAGCATGGAGAGCTCATGTACAATTCCACTGTATGATAGCAGCC
ATAAAGATGAGTTTCCATCCAATTCAACTCTTTCTACCTTCAAGAGTCAGTCTGATCTAAATAA
GGAAAATGAAAAACCAGTTCCCAAATTGGACAAATGTTCAGAAGCAGAATCCTGTAAGAATTTG
TCTGTAGATGAATTAGAAGAAGGGGAAATTAGAAGTGATGATGAAGAATCTGTAGCACAAAAGC
GTTTGGAAAAGAGTGCAAGACCCAGAACTTCTACTGAAGTGCCGCCAGGTAAAATCAGCCCAGG
AAGCAGGAGGAGCACTGTGCATGTGCATAAGGATAACGGGAGGACAGTTGTAAAACTCCCTCGG
GACAGAATCACATGGAGCCAAAGATCAAATGAATCTAGACCCTCAAACACCGAAAGGAAAAGTA
AAACAATGAGCATCTCCAGCTTGGAAAAAATACTTCCGCTTATTCTTGCACCCTCCTCCGTATG
GGAAGTTATGCATATGTTACGGTTGCTAGGAAAACATGTAAGGAAAAATTACATGAAATTCAAG
ATAAAATTTTCATTGACACAATTTCATAGAATTATTGAATCGGCAATTTTGAGTTTCACATCAC
TAATTAGATACCTTGATTTGTCTAAGATCTGTAAATCAGTAAGTACTTTACAGAAGAGTCTTTG
TGACGTTATAGAATCTAACCTTAAACAAGTGAAGAAGAATGGCATAGTTGACCGTTTATTTGAA
CAACAACAAACAGATATGAAAAAAAAATTGTGGAAGTTTGTGGATGAACAACTTGATTATTTGT
TTGAAAAACTTAAAAAAATCCTACTAAAGTTTTGTGATTCTGTAAAGCATGAAAATGACAGTAG
TGAAGGAAAACTTGGAAAAAAATATAAAGAGAGAGCCCAACATTCAAATTGTCAGAAGAAGAAA
ATGGACAACAAAGAAATACGGAGAGAAAAAGTGCTAAAATCAGAAAATACTGTGAATTTTAAAT
CTTCACTGGGGTGTGAAAAATTTGAAGAAAAACATCAAGACCAAAATAAAACCAATACTACTAC
AGTAAAGCATGATGTGAAAAGAACTTTTAGCACTTGCACTGATAATAATACAAAGAACTCTGAA
TGTAAAGAGCAGTTTCTGGGAATGAACTGCCCGAGTACCCCCAGGCCAGGAGAAACTGAAGGCA
ATGTGGAGGAGGGGACACCGGCGGCACAGCACGCCTGCGTTAAGTCAGAGCGGGGCTTTGAGAT
CCTCACCGAGCAGCAGGCGTCCAGCCTTACTTTTAACTTAGTGAGTGACGCACAGATGGGTGAG
ATATTTAAAAGTTTGCTACAAGGTTCTGATCTGTTGGACACAGGTGGCACTGAAAAAGCGGAGT
GGGAATTAAAGACTCCAGAGAAACAGCTGCTAGAGAGCCTCAAGTGTGAGTCTGCACCAGCTTG
TACAACAGAAGAGCTAGTTTCAGAGGCGGCTTCTCTCTGTCCAAAGGTGATCAGTGATGATAAT
TGGTCTTTATTATCATCTGAAAAGGGCCCATCTCTATCTTCAGGGCTTTCACTGCCAGTTCATC
CTGATGTGTTAGATGAAAATTGTATGTTTGAAGTATCTTCTAACCTTGCTTTAAGTAAAGATAA
TGTATACAGCTCAGAAAAGAGTAAGCCCTGCATTTCTTCCATACTCTTAGAAGATCTTGCGGTC
TCTTTAACAGTACCGTCACCTCTGAAGTCAGATGGCCATTTGAGTTTCTTAAAGCCTGAAGTTT
TGTCAACTTCAACTCCTGAAGAAGTTATTAGTGCACATTTTAGTGAGGATGCTTTGCTTGAGGA
AGAGGATGCATCTGAACAGGACATTCACTTAGCTCTAGAGTCTGATAACTCAAGCAGTAAGTCA
AGCTGTTCCTCATGGACAAGCCGGTCTGTTGCTTCAGGCTTTCAGTACCACCCTAATCTTCCCA
TGCATGCTGTCATTATGGAAAAGTCCAATGATCATTTCATTGTGAAAATACGGCGTGCAACACC
ATCTACCTCCCCTGGCCTTAAACATGGTATGGTAGCTGAGGAGTCGTTGACACCTTTGCCTAGA
ACTGGAAAAGAAGCTGATGGGGCAGCAGAGAAAGAACCTACCCTGTTTCAGAGTACAGTTTTAA
ACCCTGTCCAAGACTTGGAAAATTCCGACAAAAGTATTGATAAGAGCAAACCAACTCATGAAGA
TCAGAACTCTATAGTACAAACACAGGTTCCAGATATATACGAATTTCTTAAAGATGCTTCAAAT
AAGGTGGTTCATTGTGATCAAGTGGTTGATGATTGCTTCAAGTTGCATCAAGTATGGGAACCAA
AAGTTTCTGAGAGCCTTCAAGAATTGCCTTCAATGGAAAAAAATGCACACTCTGTTGATGATCA
TCTTCCTAATACACACATAGATCTAACAAAAGATCCAGCTACTGAGACTAAAAGCTTGGAGCTA
ATGGATGTAACAGTTTTAGATATCGATCACTTGGAACATTCTAAACCCAACTTAGATCAAGATG
CACAGATAACGTGTACTTCGTTACAGCATGATGCTGTAGATGCTTTTATTGATTTGACACATGA
TGTTTCAAATGAGAGTAAAAACGAAAGTAATGAACCTGTGTTAACTGTTGAAGGTGTGGGATGC
CAGGTAATATGTATAGATGACGATAACCACAAAGAAGGAAAAGTGGGGAAGGTAAACAGTTCCT
TAGAATGTACTGTTGAGGAAACCTGTATTGACTTGACCTCAGAGTCTGCTGGCTCCTTTGAAGT
AAAGAGACACACTTTAAAGTCAGAGCCTCCATCAAAGTCGGATTGTTTAGAGTTGCCTGAGACT
CTGGGGAATGGTCACAAGAAGAGAAAGAACAGTCCTGCTGTGAGTCACTCTTCTCAGAAAAAGC
AAAGAAAGGACATGGACTTAAGTAGTGAAAAGACCAAGAGACTTAGTCCTAATTCTGATAGAAC
TGGTGATGCTCACAGAAAGCATGGCAGCAAGAAGAGGGAACCTGCAGTAAGTGACACATCCTTG
TCATCAGAGGTCAACCCAGAGGTGAAGGGCTCAACAGCACCACTTGCTACTTTTCCAGGAAGCC
TTTCTGCAAAAAATGTTATCAAAAAGAAAGGAGAAATTATAGTTTCATGGACAAGAAATGACGA
CAGGGAAATTTTACTGGAATGTCAGAAAAGAATGCCGTCCCTGAAAACATTTACCCACTTGGCT
GTCAAACTGAATAAAAATCCAAATCAGGTTTCAGAGAGGTTCCAGCAACTGAAAAAGCTTTTTG
AGAAGTCAAAATGCAGGTAGTAGTGGGTCCATCGCAGGATGCTAATGCTATGAGTTGCTGGATT
TCATGGTGCCTCACTGATAATTCTTCTACAAAGAAGCTTCGATTCCTCGTGTTTTAAATGGGGA
ACTAGGTGGAGGTTTTGTCTCAGTTTTGGTGACTAGATGATCATCTACCTTTTTTTTACTTTCC
TGGTCATTGTGCTTGGCTTATTCAGATCAACAGTCTGATTCACTTTCCTGTTATTGGTCAGAAT
ATTTATTTTTAATCATTAAAAGTTGTTATCAAATGAAAGAATAAAAGCAACCTCAATGTAATAC
TGAAACCTTAGTTTTGATATTGGATGAAATAACTTCTTTAGATTTTAAAAAACAATTTTGTAGC
ATTTTAAATGTAATGACTATTTAGTTCACCTTTCTATTCATTTTTGTTTTTATAATTGCCTCAT
TTTGGAAAATTGTGAAATAATTTAAATAGTATATTTGTATATATGTATAATTATTGTAATGTAA
AATACTATGACTGTATGTGTCTTGAGTGTATGTATGCACATGAATGGCTTTGCTAGCCAAAGGG
TTTTTTTATCTATATAAAATATTTTGTATAAACTTTCCTTTCAGTTAGTCATGTATAATAAAAA
CATGTAAAGTCCTTTTTATTTTTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101391	(Get FASTA)	NCBI Sequence Viewer
	NP_001423692	(Get FASTA)	NCBI Sequence Viewer
	XP_006238035	(Get FASTA)	NCBI Sequence Viewer
	XP_006238036	(Get FASTA)	NCBI Sequence Viewer
	XP_006238037	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98565	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009227
	ENSRNOP00000009227.4
	ENSRNOP00000085206.1
	ENSRNOP00000103253
	ENSRNOP00000103253.1

RefSeq Acc Id:

NP_001101391 ⟸ NM_001107921

- UniProtKB:

D4A7V6 (UniProtKB/TrEMBL), A6IIJ5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAADDDNGDGTGLFDVCPASPLKNNDEGSLDIYAGLDSTVSDSTARSCVSFRNCLDLYEEILTE
EGTAKEATYSDLQIEYGKCQQQMKDLMKRFKEIQTQNLNLKNENQSLKKNISALIKTARVEINR
KDEEINHLHQRLSEFPHFRNNHKTARTKDSRSKSPHLDNCSKTDHGVKSDVQKDIHPNTSQPNL
EKEGKSHSEAQNSLHLSTGIEKHCTNNVWSRSPYQVSEGNSNEDNRRGRNGVRHSQGSRGTDRT
QKDLNSSCNDGEPRDKEAASRLHGNPEKHGSSEARAENKISEIKSSTGLGNKSERSASSWEKET
SRERPHTRVEPQNDKNLERQNERLQNTHRKELQSQDKAERKGDVKFKPAGEEQGHRGRVDRALP
PHSKNDMKYYGFNKYHPEERRGREDGKRDRGMSSHGFQDRRCSSSLSSNRNSKYPHSKEVSVAH
QWENTPFKAERHRTEDRRKRERENKEESRHVKSDKKSPPEHLQRTHKDTKKSTANGKRQTEQKH
GKGPVSTSELSKGTDNRECTMKVENGPNEAKGKDLKLSFMEKLNLTLSPAKKQPVCQDNEHQII
GVPKPSGVCDSQSLEKTETVACLPSVSEQDREEPKSELPEPKEALSATSQPRTSIPENKVKEEN
RLLFKSVENTVPCELLACGTEISFPAPVEIEQARCLVQSMEVEETCAGARAAASVVMRVLPEHA
SEDFSQELGTKRHDDINSCDISEGGKKKVVLSPKAAAASESHLEPVVEEPSISPVNCSGDNNPK
LEPSLEERPKVENKSSPLEPCLPKEMFVPSPQKTELIDHKIDTGESNSVYQDDDNSVLSIDFNN
LRPIPEPISPLNSPVRPVSKVLSMESSCTIPLYDSSHKDEFPSNSTLSTFKSQSDLNKENEKPV
PKLDKCSEAESCKNLSVDELEEGEIRSDDEESVAQKRLEKSARPRTSTEVPPGKISPGSRRSTV
HVHKDNGRTVVKLPRDRITWSQRSNESRPSNTERKSKTMSISSLEKILPLILAPSSVWEVMHML
RLLGKHVRKNYMKFKIKFSLTQFHRIIESAILSFTSLIRYLDLSKICKSVSTLQKSLCDVIESN
LKQVKKNGIVDRLFEQQQTDMKKKLWKFVDEQLDYLFEKLKKILLKFCDSVKHENDSSEGKLGK
KYKERAQHSNCQKKKMDNKEIRREKVLKSENTVNFKSSLGCEKFEEKHQDQNKTNTTTVKHDVK
RTFSTCTDNNTKNSECKEQFLGMNCPSTPRPGETEGNVEEGTPAAQHACVKSERGFEILTEQQA
SSLTFNLVSDAQMGEIFKSLLQGSDLLDTGGTEKAEWELKTPEKQLLESLKCESAPACTTEELV
SEAASLCPKVISDDNWSLLSSEKGPSLSSGLSLPVHPDVLDENCMFEVSSNLALSKDNVYSSEK
SKPCISSILLEDLAVSLTVPSPLKSDGHLSFLKPEVLSTSTPEEVISAHFSEDALLEEEDASEQ
DIHLALESDNSSSKSSCSSWTSRSVASGFQYHPNLPMHAVIMEKSNDHFIVKIRRATPSTSPGL
KHGMVAEESLTPLPRTGKEADGAAEKEPTLFQSTVLNPVQDLENSDKSIDKSKPTHEDQNSIVQ
TQVPDIYEFLKDASNKVVHCDQVVDDCFKLHQVWEPKVSESLQELPSMEKNAHSVDDHLPNTHI
DLTKDPATETKSLELMDVTVLDIDHLEHSKPNLDQDAQITCTSLQHDAVDAFIDLTHDVSNESK
NESNEPVLTVEGVGCQVICIDDDNHKEGKVGKVNSSLECTVEETCIDLTSESAGSFEVKRHTLK
SEPPSKSDCLELPETLGNGHKKRKNSPAVSHSSQKKQRKDMDLSSEKTKRLSPNSDRTGDAHRK
HGSKKREPAVSDTSLSSEVNPEVKGSTAPLATFPGSLSAKNVIKKKGEIIVSWTRNDDREILLE
CQKRMPSLKTFTHLAVKLNKNPNQVSERFQQLKKLFEKSKCR

hide sequence

RefSeq Acc Id:	XP_006238035 ⟸ XM_006237973
- Peptide Label:	isoform X1
- UniProtKB:	D4A7V6 (UniProtKB/TrEMBL), A6IIJ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAADDDNGDGTGLFDVCPASPLKNNDEGSLDIYAGLDSTVSDSTARSCVSFRNCLDLYEEILTE EGTAKEATYSDLQIEYGKCQQQMKDLMKRFKEIQTQNLNLKNENQSLKKNISALIKTARVEINR KDEEINHLHQRLSEFPHFRNNHKTARTKDSRSKSPHLDNCSKTDHGVKSDVQKDIHPNTSQPNL EKEGKSHSEAQNSLHLSTGIEKHCTNNVWSRSPYQVSEGNSNEDNRRGRNGVRHSQGSRGTDRT QKDLNSSCNDGEPRDKEAASRLHGNPEKHGSSEARAENKISEIKSSTGLGNKSERSASSWEKET SRERPHTRVEPQNDKNLERQNERLQNTHRKELQSQDKAERKGDVKFKPAGEEQGHRGRVDRALP PHSKNDMKYYGFNKYHPEERRGREDGKRDRGMSSHGFQDRRCSSSLSSNRNSKYPHSKEVSVAH QWENTPFKAERHRTEDRRKRERENKEESRHVKSDKKSPPEHLQRTHKDTKKSTANGKRQTEQKH GKGPVSTSELSKGTDNRECTMKVENGPNEAKGKDLKLSFMEKLNLTLSPAKKQPVCQDNEHQII GVPKPSGVCDSQSLEKTETVACLPSVSEQDREEPKSELPEPKEALSATSQPRTSIPENKVKEEN RLLFKSVENTVPCELLACGTEISFPAPVEIEQARCLVQSMEVEETCAGARAAASVVMRVLPEHA SEDFSQELGTKRHDDINSCDISEGGKKKVVLSPKAAAASESHLEPVVEEPSISPVNCSGDNNPK LEPSLEERPKVENKSSPLEPCLPKEMFVPSPQKTELIDHKIDTGESNSVYQDDDNSVLSIDFNN LRPIPEPISPLNSPVRPVSKVLSMESSCTIPLYDSSHKDEFPSNSTLSTFKSQSDLNKENEKPV PKLDKCSEAESCKNLSVDELEEGEIRSDDEESVAQKRLEKSARPRTSTEVPPGKISPGSRRSTV HVHKDNGRTVVKLPRDRITWSQRSNESRPSNTERKSKTMSISSLEKILPLILAPSSVWEVMHML RLLGKHVRKNYMKFKIKFSLTQFHRIIESAILSFTSLIRYLDLSKICKSVSTLQKSLCDVIESN LKQVKKNGIVDRLFEQQQTDMKKKLWKFVDEQLDYLFEKLKKILLKFCDSVKHENDSSEGKLGK KYKERAQHSNCQKKKMDNKEIRREKVLKSENTVNFKSSLGCEKFEEKHQDQNKTNTTTVKHDVK RTFSTCTDNNTKNSECKEQFLGMNCPSTPRPGETEGNVEEGTPAAQHACVKSERGFEILTEQQA SSLTFNLVSDAQMGEIFKSLLQGSDLLDTGGTEKAEWELKTPEKQLLESLKCESAPACTTEELV SEAASLCPKVISDDNWSLLSSEKGPSLSSGLSLPVHPDVLDENCMFEVSSNLALSKDNVYSSEK SKPCISSILLEDLAVSLTVPSPLKSDGHLSFLKPEVLSTSTPEEVISAHFSEDALLEEEDASEQ DIHLALESDNSSSKSSCSSWTSRSVASGFQYHPNLPMHAVIMEKSNDHFIVKIRRATPSTSPGL KHGMVAEESLTPLPRTGKEADGAAEKEPTLFQSTVLNPVQDLENSDKSIDKSKPTHEDQNSIVQ TQVPDIYEFLKDASNKVVHCDQVVDDCFKLHQVWEPKVSESLQELPSMEKNAHSVDDHLPNTHI DLTKDPATETKSLELMDVTVLDIDHLEHSKPNLDQDAQITCTSLQHDAVDAFIDLTHDVSNESK NESNEPVLTVEGVGCQVICIDDDNHKEGKVGKVNSSLECTVEETCIDLTSESAGSFEVKRHTLK SEPPSKSDCLELPETLGNGHKKRKNSPAVSHSSQKKQRKDMDLSSEKTKRLSPNSDRTGDAHRK HGSKKREPAVSDTSLSSEVNPEVKGSTAPLATFPGSLSAKNVIKKKGEIIVSWTRNDDREILLE CQKRMPSLKTFTHLAVKLNKNPNQVSERFQQLKKLFEKSKCR hide sequence

RefSeq Acc Id:	XP_006238037 ⟸ XM_006237975
- Peptide Label:	isoform X1
- UniProtKB:	D4A7V6 (UniProtKB/TrEMBL), A6IIJ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAADDDNGDGTGLFDVCPASPLKNNDEGSLDIYAGLDSTVSDSTARSCVSFRNCLDLYEEILTE EGTAKEATYSDLQIEYGKCQQQMKDLMKRFKEIQTQNLNLKNENQSLKKNISALIKTARVEINR KDEEINHLHQRLSEFPHFRNNHKTARTKDSRSKSPHLDNCSKTDHGVKSDVQKDIHPNTSQPNL EKEGKSHSEAQNSLHLSTGIEKHCTNNVWSRSPYQVSEGNSNEDNRRGRNGVRHSQGSRGTDRT QKDLNSSCNDGEPRDKEAASRLHGNPEKHGSSEARAENKISEIKSSTGLGNKSERSASSWEKET SRERPHTRVEPQNDKNLERQNERLQNTHRKELQSQDKAERKGDVKFKPAGEEQGHRGRVDRALP PHSKNDMKYYGFNKYHPEERRGREDGKRDRGMSSHGFQDRRCSSSLSSNRNSKYPHSKEVSVAH QWENTPFKAERHRTEDRRKRERENKEESRHVKSDKKSPPEHLQRTHKDTKKSTANGKRQTEQKH GKGPVSTSELSKGTDNRECTMKVENGPNEAKGKDLKLSFMEKLNLTLSPAKKQPVCQDNEHQII GVPKPSGVCDSQSLEKTETVACLPSVSEQDREEPKSELPEPKEALSATSQPRTSIPENKVKEEN RLLFKSVENTVPCELLACGTEISFPAPVEIEQARCLVQSMEVEETCAGARAAASVVMRVLPEHA SEDFSQELGTKRHDDINSCDISEGGKKKVVLSPKAAAASESHLEPVVEEPSISPVNCSGDNNPK LEPSLEERPKVENKSSPLEPCLPKEMFVPSPQKTELIDHKIDTGESNSVYQDDDNSVLSIDFNN LRPIPEPISPLNSPVRPVSKVLSMESSCTIPLYDSSHKDEFPSNSTLSTFKSQSDLNKENEKPV PKLDKCSEAESCKNLSVDELEEGEIRSDDEESVAQKRLEKSARPRTSTEVPPGKISPGSRRSTV HVHKDNGRTVVKLPRDRITWSQRSNESRPSNTERKSKTMSISSLEKILPLILAPSSVWEVMHML RLLGKHVRKNYMKFKIKFSLTQFHRIIESAILSFTSLIRYLDLSKICKSVSTLQKSLCDVIESN LKQVKKNGIVDRLFEQQQTDMKKKLWKFVDEQLDYLFEKLKKILLKFCDSVKHENDSSEGKLGK KYKERAQHSNCQKKKMDNKEIRREKVLKSENTVNFKSSLGCEKFEEKHQDQNKTNTTTVKHDVK RTFSTCTDNNTKNSECKEQFLGMNCPSTPRPGETEGNVEEGTPAAQHACVKSERGFEILTEQQA SSLTFNLVSDAQMGEIFKSLLQGSDLLDTGGTEKAEWELKTPEKQLLESLKCESAPACTTEELV SEAASLCPKVISDDNWSLLSSEKGPSLSSGLSLPVHPDVLDENCMFEVSSNLALSKDNVYSSEK SKPCISSILLEDLAVSLTVPSPLKSDGHLSFLKPEVLSTSTPEEVISAHFSEDALLEEEDASEQ DIHLALESDNSSSKSSCSSWTSRSVASGFQYHPNLPMHAVIMEKSNDHFIVKIRRATPSTSPGL KHGMVAEESLTPLPRTGKEADGAAEKEPTLFQSTVLNPVQDLENSDKSIDKSKPTHEDQNSIVQ TQVPDIYEFLKDASNKVVHCDQVVDDCFKLHQVWEPKVSESLQELPSMEKNAHSVDDHLPNTHI DLTKDPATETKSLELMDVTVLDIDHLEHSKPNLDQDAQITCTSLQHDAVDAFIDLTHDVSNESK NESNEPVLTVEGVGCQVICIDDDNHKEGKVGKVNSSLECTVEETCIDLTSESAGSFEVKRHTLK SEPPSKSDCLELPETLGNGHKKRKNSPAVSHSSQKKQRKDMDLSSEKTKRLSPNSDRTGDAHRK HGSKKREPAVSDTSLSSEVNPEVKGSTAPLATFPGSLSAKNVIKKKGEIIVSWTRNDDREILLE CQKRMPSLKTFTHLAVKLNKNPNQVSERFQQLKKLFEKSKCR hide sequence

RefSeq Acc Id:

XP_006238036 ⟸ XM_006237974

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAADDDNGDGTGLFDVCPASPLKNNDEGSLDIYAGLDSTVSDSTARSCVSFRNCLDLYEEILTE
EGTAKEATYSDLQIEYGKCQQQMKDLMKRFKEIQTQNLNLKNENQSLKKNISALIKTARVEINR
KDEEINHLHQRLSEFPHFRNNHKTARTKDSRSKSPHLDNCSKTDHGVKSDVQKDIHPNTSQPNL
EKEGKSHSEAQNSLHLSTGIEKHCTNNVWSRSPYQVSEGNSNEDNRRGRNGVRHSQGSRGTDRT
QKDLNSSCNDGEPRDKEAASRLHGNPEKHGSSEARAENKISEIKSSTGLGNKSERSASSWEKET
SRERPHTRVEPQNDKNLERQNERLQNTHRKELQSQDKAERKGDVKFKPAGEEQGHRGRVDRALP
PHSKNDMKYYGFNKYHPEERRGREDGKRDRGMSSHGFQDRRCSSSLSSNRNSKYPHSKEVSVAH
QWENTPFKAERHRTEDRRKRERENKEESRHVKSDKKSPPEHLQRTHKDTKKSTANGKRQTEQKH
GKGPVSTSELSKGTDNRECTMKVENGPNEAKGKDLKLSFMEKLNLTLSPAKKQPVCQDNEHQII
GVPKPSGVCDSQSLEKTETVACLPSVSEQDREEPKSELPEPKEALSATSQPRTSIPENKVKEEN
RLLFKSVENTVPCELLACGTEISFPAPVEIEQARCLVQSMEVEETCAGARAAASVVMRVLPEHA
SEDFSQELGTKRHDDINSCDISEGGKKKVVLSPKAAAASESHLEPVVEEPSISPVNCSGDNNPK
LEPSLEERPKVENKSSPLEPCLPKEMFVPSPQKTELIDHKIDTGESNSVYQDDDNSVLSIDFNN
LRPIPEPISPLNSPVRPVSKVLSMESSCTIPLYDSSHKDEFPSNSTLSTFKSQSDLNKENEKPV
PKLDKCSEAESCKNLSVDELEEGEIRSDDEESVAQKRLEKSARPRTSTEVPPGKISPGSRRSTV
HVHKDNGRTVVKLPRDRITWSQRSNESRPSNTERKSKTMSISSLEKILPLILAPSSVWEVMHML
RLLGKHVRKNYMKFKIKFSLTQFHRIIESAILSFTSLIRYLDLSKICKSVSTLQKSLCDVIESN
LKQVKKNGIVDRLFEQQQTDMKKKLWKFVDEQLDYLFEKLKKILLKFCDSVKHENDSSEGKLGK
KYKERAQHSNCQKKKMDNKEIRREKVLKSENTVNFKSSLGCEKFEEKHQDQNKTNTTTVKHDVK
RTFSTCTDNNTKNSECKEQFLGMNCPSTPRPGETEGNVEEGTPAAQHACVKSERGFEILTEQQA
SSLTFNLVSDAQMGEIFKSLLQGSDLLDTGGTEKAEWELKTPEKQLLESLKCESAPACTTEELV
SEAASLCPKVISDDNWSLLSSEKGPSLSSGLSLPVHPDVLDENCMFEVSSNLALSKDNVYSSEK
SKPCISSILLEDLAVSLTVPSPLKSDGHLSFLKPEVLSTSTPEEVISAHFSEDALLEEEDASEQ
DIHLALESDNSSSKSSCSSWTSRSVASGFQYHPNLPMHAVIMEKSNDHFIVKIRRATPSTSPGL
KHGMVAEESLTPLPRTGKEADGAAEKEPTLFQSTVLNPVQDLENSDKSIDKSKPTHEDQNSIVQ
TQVPDIYEFLKDASNKVVHCDQVVDDCFKLHQVWEPKVSESLQELPSMEKNAHSVDDHLPNTHI
DLTKDPATETKSLELMDVTVLDIDHLEHSKPNLDQDAQITCTSLQHDAVDAFIDLTHDVSNESK
NESNEPVLTVEGVGCQVICIDDDNHKEGKVGKVNSSLECTVEETCIDLTSESAGSFEVKRHTLK
SEPPSKSDCLELPETLGNGHKKRKNSPAVSHSSQKKQRKDMDLSSEKTKRLSPNSDRTGDAHRK
HGSKKREPAVSDTSLSSEVNPEVKGSTAPLATFPGSLSAKNVIKKKGEIIVSWTRNDDREILLE
CQKRMPSLKTFTHLAVKLNKNPNQVSERFQQLKKLFEKSKCR

hide sequence

Ensembl Acc Id:

ENSRNOP00000075576 ⟸ ENSRNOT00000079656

Ensembl Acc Id:

ENSRNOP00000009227 ⟸ ENSRNOT00000009228

Ensembl Acc Id:

ENSRNOP00000085206 ⟸ ENSRNOT00000101963

Ensembl Acc Id:

ENSRNOP00000103253 ⟸ ENSRNOT00000153566

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A7V6-F1-model_v2	AlphaFold	D4A7V6	1-1962	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693608

Promoter ID:

EPDNEW_R4133

Type:

initiation region

Name:

Casp8ap2_1

Description:

caspase 8 associated protein 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	47,853,764 - 47,853,824	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305771	AgrOrtholog
BioCyc Gene	G2FUF-41717	BioCyc
Ensembl Genes	ENSRNOG00000006487	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000009228	ENTREZGENE
	ENSRNOT00000009228.8	UniProtKB/TrEMBL
	ENSRNOT00000101963.2	UniProtKB/TrEMBL
	ENSRNOT00000153566	ENTREZGENE
	ENSRNOT00000153566.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	FLASH	UniProtKB/TrEMBL
KEGG Report	rno:313128	UniProtKB/TrEMBL
NCBI Gene	313128	ENTREZGENE
PANTHER	CASP8-ASSOCIATED PROTEIN 2	UniProtKB/TrEMBL
	PTHR15489	UniProtKB/TrEMBL
Pfam	Myb_DNA-binding_7	UniProtKB/TrEMBL
PhenoGen	Casp8ap2	PhenoGen
RatGTEx	ENSRNOG00000006487	RatGTEx
UniProt	A0A8I5ZZN1_RAT	UniProtKB/TrEMBL
	A0ABK0LJV3_RAT	UniProtKB/TrEMBL
	A6IIJ5	ENTREZGENE, UniProtKB/TrEMBL
	D4A7V6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Casp8ap2	caspase 8 associated protein 2	Casp8ap2_predicted	caspase 8 associated protein 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Casp8ap2_predicted	caspase 8 associated protein 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations