Gnb3 (G protein subunit beta 3) - Rat Genome Database

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Pathways
Gene: Gnb3 (G protein subunit beta 3) Rattus norvegicus
Analyze
Symbol: Gnb3
Name: G protein subunit beta 3
RGD ID: 708344
Description: Enables spectrin binding activity. Predicted to be involved in several processes, including cell volume homeostasis; regulation of fat cell differentiation; and regulation of lipid metabolic process. Located in cell body. Human ortholog(s) of this gene implicated in artery disease (multiple); congenital stationary night blindness 1H; depressive disorder; familial hyperlipidemia; and type 2 diabetes mellitus. Orthologous to human GNB3 (G protein subunit beta 3); PARTICIPATES IN visual phototransduction pathway; chemokine mediated signaling pathway; glutamate signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aconitine; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: G protein beta-subunit; G protein beta-subunit gene; guanine nucleotide binding protein (G protein), beta 3; guanine nucleotide binding protein (G protein), beta polypeptide 3; guanine nucleotide binding protein, beta 3; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3; guanine nucleotide-binding protein, beta-3 subunit; heterotrimeric guanine nucleotide-binding protein 2d; Hg2d; LOC60449; MGC105437; transducin beta chain 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Gnb3em1Mcwi
Genetic Models: SS-Gnb3em1Mcwi
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,325,741 - 159,331,443 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4159,325,742 - 159,331,445 (-)EnsemblGRCr8
mRatBN7.24157,639,468 - 157,645,171 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4157,639,469 - 157,645,173 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4163,867,751 - 163,873,454 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04159,650,661 - 159,656,363 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,286,144 - 158,291,844 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,352,558 - 157,359,237 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,352,372 - 157,358,262 (-)Ensemblrn6Rnor6.0
Rnor_5.04224,370,234 - 224,376,918 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44160,957,524 - 160,963,226 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4146,377,383 - 146,383,085 (-)NCBICelera
RGSC_v3.14161,202,460 - 161,208,162 (-)NCBI
Cytogenetic Map4q42NCBI
JBrowse:




Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Photoreceptor signaling: supporting vision across a wide range of light intensities. Arshavsky VY and Burns ME, J Biol Chem. 2012 Jan 13;287(3):1620-6. Epub 2011 Nov 10.
2. Salt consumption-dependent association of the GNB3 gene polymorphism with type 2 DM. Daimon M, etal., Biochem Biophys Res Commun. 2008 Sep 26;374(3):576-80. Epub 2008 Jul 24.
3. G protein beta3 subunit 825T allele is associated with depression in young, healthy subjects. Exton MS, etal., Neuroreport 2003 Mar 3;14(3):531-3.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Association of the C825T polymorphism of the G-protein beta3 subunit gene with hypertension, obesity, hyperlipidemia, insulin resistance, diabetes, diabetic complications, and diabetic therapies among Japanese. Hayakawa T, etal., Metabolism. 2007 Jan;56(1):44-8.
6. Association between a polymorphism in the G protein beta3 subunit gene (GNB3) with arterial hypertension but not with myocardial infarction. Hengstenberg C, etal., Cardiovasc Res. 2001 Mar;49(4):820-7.
7. 825T allele of the G-protein beta3 subunit gene (GNB3) is associated with impaired left ventricular diastolic filling in essential hypertension. Jacobi J, etal., J Hypertens. 1999 Oct;17(10):1457-62.
8. Interactions between the FTO and GNB3 genes contribute to varied clinical phenotypes in hypertension. Kumar R, etal., PLoS One. 2013 May 14;8(5):e63934. doi: 10.1371/journal.pone.0063934. Print 2013.
9. Immunohistochemical localization of G protein beta1, beta2, beta3, beta4, beta5, and gamma3 subunits in the adult rat brain. Liang JJ, etal., J Neurochem. 1998 Jul;71(1):345-55.
10. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
11. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
12. The giant spectrin betaV couples the molecular motors to phototransduction and Usher syndrome type I proteins along their trafficking route. Papal S, etal., Hum Mol Genet. 2013 Sep 15;22(18):3773-88. doi: 10.1093/hmg/ddt228. Epub 2013 May 23.
13. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
14. Cloning and sequencing of a rat heart cDNA encoding a G-protein beta subunit related to the human retinal beta 3 subunit. Ray K and Robishaw JD, Gene 1994 Nov 18;149(2):337-40.
15. G-protein beta3 subunit (GNB3) gene polymorphisms and cardiovascular disease: the Ludwigshafen Risk and Cardiovascular Health (LURIC) study. Renner W, etal., Atherosclerosis. 2007 May;192(1):108-12. Epub 2006 Aug 14.
16. GOA pipeline RGD automated data pipeline
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. Comprehensive gene review and curation RGD comprehensive gene curation
19. Polymorphisms of genes encoding components of the sympathetic nervous system but not the renin-angiotensin system as risk factors for orthostatic hypotension. Tabara Y, etal., J Hypertens. 2002 Apr;20(4):651-6.
20. Associations of a human G protein beta3 subunit dimorphism with insulin resistance and carotid atherosclerosis. Wascher TC, etal., Stroke. 2003 Mar;34(3):605-9. Epub 2003 Feb 20.
Additional References at PubMed
PMID:12454992   PMID:12477932   PMID:15489334   PMID:19255495   PMID:23533145   PMID:25931508   PMID:29206867   PMID:29476059  


Genomics

Comparative Map Data
Gnb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,325,741 - 159,331,443 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4159,325,742 - 159,331,445 (-)EnsemblGRCr8
mRatBN7.24157,639,468 - 157,645,171 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4157,639,469 - 157,645,173 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4163,867,751 - 163,873,454 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04159,650,661 - 159,656,363 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,286,144 - 158,291,844 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,352,558 - 157,359,237 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,352,372 - 157,358,262 (-)Ensemblrn6Rnor6.0
Rnor_5.04224,370,234 - 224,376,918 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44160,957,524 - 160,963,226 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4146,377,383 - 146,383,085 (-)NCBICelera
RGSC_v3.14161,202,460 - 161,208,162 (-)NCBI
Cytogenetic Map4q42NCBI
GNB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,840,925 - 6,847,393 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,839,954 - 6,847,393 (+)Ensemblhg38GRCh38
GRCh37126,950,089 - 6,956,557 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,819,636 - 6,826,818 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34126,819,635 - 6,826,818NCBI
Celera128,566,659 - 8,573,841 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef126,803,098 - 6,810,284 (+)NCBIHuRef
CHM1_1126,948,373 - 6,955,555 (+)NCBICHM1_1
T2T-CHM13v2.0126,850,217 - 6,856,691 (+)NCBIT2T-CHM13v2.0
Gnb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396124,811,203 - 124,817,238 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6124,811,203 - 124,817,238 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386124,834,240 - 124,840,275 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,834,240 - 124,840,275 (-)Ensemblmm10GRCm38
MGSCv376124,784,258 - 124,790,293 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366124,799,859 - 124,805,894 (-)NCBIMGSCv36mm8
Celera6126,510,369 - 126,516,404 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.17NCBI
Gnb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,440,693 - 4,447,416 (+)Ensembl
ChiLan1.0NW_0049554134,440,693 - 4,447,419 (+)NCBIChiLan1.0ChiLan1.0
GNB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,403,159 - 12,410,535 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,399,910 - 12,407,293 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,971,854 - 6,979,214 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,883,280 - 6,890,692 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,883,280 - 6,890,692 (+)EnsemblpanPan2panpan1.1
GNB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,175,928 - 38,182,473 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2738,175,931 - 38,181,763 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha278,434,984 - 8,440,816 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02738,528,834 - 38,535,384 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2738,528,834 - 38,534,666 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,402,886 - 38,408,718 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02738,443,911 - 38,449,741 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0277,913,716 - 7,919,548 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gnb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,302,620 - 102,309,507 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936709970,172 - 976,863 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936709970,169 - 977,059 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl563,863,661 - 63,870,433 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1563,863,656 - 63,871,352 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,299,162 - 66,306,064 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GNB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,873,043 - 6,880,676 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl116,874,351 - 6,880,179 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660631,342,884 - 1,350,505 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gnb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,509,397 - 3,515,352 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248603,509,185 - 3,515,025 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Gnb3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1623,050,943 - 23,057,703 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gnb3
74 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:198
Count of miRNA genes:127
Interacting mature miRNAs:138
Transcripts:ENSRNOT00000021481
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4149763204169799698Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4131384565176384565Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4123870974168870974Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4117559384162559384Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4127263297172263297Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4126334185171334185Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4124700988169700988Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4134199006168870974Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4148121375176967367Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4116184844161184844Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4148834094168870974Rat

Markers in Region
RH131999  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24157,639,507 - 157,639,695 (+)MAPPERmRatBN7.2
Rnor_6.04157,352,598 - 157,352,785NCBIRnor6.0
Rnor_5.04224,370,274 - 224,370,461UniSTSRnor5.0
RGSC_v3.44160,957,564 - 160,957,751UniSTSRGSC3.4
Celera4146,377,423 - 146,377,610UniSTS
RH 3.4 Map41005.8UniSTS
Cytogenetic Map4q42UniSTS
RH136873  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24157,646,252 - 157,646,441 (+)MAPPERmRatBN7.2
Rnor_6.04157,359,342 - 157,359,530NCBIRnor6.0
Rnor_5.04224,377,018 - 224,377,206UniSTSRnor5.0
RGSC_v3.44160,964,308 - 160,964,496UniSTSRGSC3.4
Celera4146,384,167 - 146,384,355UniSTS
RH 3.4 Map41004.3UniSTS
Cytogenetic Map4q42UniSTS
MARC_10541-10542:1000149110:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84159,328,407 - 159,328,960 (+)Marker Load Pipeline
mRatBN7.24157,642,135 - 157,642,688 (+)MAPPERmRatBN7.2
Rnor_6.04157,355,225 - 157,355,777NCBIRnor6.0
Rnor_5.04224,372,901 - 224,373,453UniSTSRnor5.0
RGSC_v3.44160,960,191 - 160,960,743UniSTSRGSC3.4
Celera4146,380,050 - 146,380,602UniSTS
Cytogenetic Map4q42UniSTS


Genetic Models
This gene Gnb3 is modified in the following models/strains:


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
14 12 64 159 86 85 54 38 54 6 282 134 10 139 72 79 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000021481   ⟹   ENSRNOP00000021480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4159,325,742 - 159,331,445 (-)Ensembl
mRatBN7.2 Ensembl4157,639,469 - 157,645,173 (-)Ensembl
Rnor_6.0 Ensembl4157,352,559 - 157,358,262 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000090898   ⟹   ENSRNOP00000069551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4157,352,372 - 157,358,007 (-)Ensembl
RefSeq Acc Id: NM_021858   ⟹   NP_068630
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,325,741 - 159,331,443 (-)NCBI
mRatBN7.24157,639,468 - 157,645,171 (-)NCBI
Rnor_6.04157,352,558 - 157,358,260 (-)NCBI
Rnor_5.04224,370,234 - 224,376,918 (-)NCBI
RGSC_v3.44160,957,524 - 160,963,226 (-)RGD
Celera4146,377,383 - 146,383,085 (-)RGD
Sequence:
RefSeq Acc Id: NP_068630   ⟸   NM_021858
- UniProtKB: P52287 (UniProtKB/Swiss-Prot),   A6ILM1 (UniProtKB/TrEMBL),   Q45QL4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021480   ⟸   ENSRNOT00000021481
Ensembl Acc Id: ENSRNOP00000069551   ⟸   ENSRNOT00000090898

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P52287-F1-model_v2 AlphaFold P52287 1-340 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693392
Promoter ID:EPDNEW_R3917
Type:single initiation site
Name:Gnb3_1
Description:G protein subunit beta 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04157,358,239 - 157,358,299EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708344 AgrOrtholog
BioCyc Gene G2FUF-43063 BioCyc
Ensembl Genes ENSRNOG00000015541 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000021481 ENTREZGENE
  ENSRNOT00000021481.5 UniProtKB/Swiss-Prot
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7193131 IMAGE-MGC_LOAD
InterPro G-protein_beta_WD-40_rep UniProtKB/Swiss-Prot
  Gprotein_B UniProtKB/Swiss-Prot
  Guanine_nucleotide-bd_bsu UniProtKB/Swiss-Prot
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot
  WD40_repeat UniProtKB/Swiss-Prot
  WD40_repeat_CS UniProtKB/Swiss-Prot
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:60449 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105437 IMAGE-MGC_LOAD
NCBI Gene 60449 ENTREZGENE
PANTHER PTHR19850 UniProtKB/Swiss-Prot
Pfam WD40_Gbeta UniProtKB/Swiss-Prot
PharmGKB GNB3 RGD
PhenoGen Gnb3 PhenoGen
PIRSF GN-bd_beta UniProtKB/Swiss-Prot
PRINTS GPROTEINB UniProtKB/Swiss-Prot
  GPROTEINBRPT UniProtKB/Swiss-Prot
PROSITE WD_REPEATS_1 UniProtKB/Swiss-Prot
  WD_REPEATS_2 UniProtKB/Swiss-Prot
  WD_REPEATS_REGION UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000015541 RatGTEx
SMART WD40 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot
UniProt A6ILM1 ENTREZGENE, UniProtKB/TrEMBL
  A6ILM2_RAT UniProtKB/TrEMBL
  GBB3_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q45QL4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-26 Gnb3  guanine nucleotide binding protein (G protein), beta polypeptide 3  Gnb3  guanine nucleotide binding protein (G protein), beta 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-20 Gnb3  guanine nucleotide binding protein (G protein), beta 3  Gnb3  guanine nucleotide binding protein, beta 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Gnb3  guanine nucleotide binding protein, beta 3  LOC60449  G protein beta-subunit gene  Symbol and Name updated 1299863 APPROVED