Rps27a (ribosomal protein S27a) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Rps27a (ribosomal protein S27a) Rattus norvegicus
Analyze
Symbol: Rps27a (Ensembl: Rps27a-ps1)
Name: ribosomal protein S27a (Ensembl:ribosomal protein S27a, pseudogene 1)
RGD ID: 6489478
Description: Predicted to enable protein tag activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process; protein ubiquitination; and ribosomal small subunit biogenesis. Part of cytosolic small ribosomal subunit. Orthologous to human RPS27A (ribosomal protein S27a); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100912032; ubiquitin carboxyl extension protein 80; ubiquitin-40S ribosomal protein S27a; ubiquitin-40S ribosomal protein S27a-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rps27a-ps1   Rps27a-ps10   Rps27a-ps11   Rps27a-ps12   Rps27a-ps13   Rps27a-ps14   Rps27a-ps15   Rps27a-ps16   Rps27a-ps18   Rps27a-ps19   Rps27a-ps2   Rps27a-ps20   Rps27a-ps21   Rps27a-ps23   Rps27a-ps24   Rps27a-ps25   Rps27a-ps26   Rps27a-ps28   Rps27a-ps29   Rps27a-ps3   Rps27a-ps30   Rps27a-ps31   Rps27a-ps4   Rps27a-ps5   Rps27a-ps6   Rps27a-ps7   Rps27a-ps8   Rps27a-ps9  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814107,486,664 - 107,488,941 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl14107,486,664 - 107,488,941 (-)EnsemblGRCr8
GRCr8 Ensembl5158,937,842 - 158,938,561 (+)EnsemblGRCr8
GRCr8 Ensembl5138,465,088 - 138,466,080 (-)EnsemblGRCr8
mRatBN7.214103,285,734 - 103,288,011 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14103,285,734 - 103,288,011 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl5153,655,012 - 153,655,482 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl5133,180,212 - 133,180,805 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx14107,625,246 - 107,627,522 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014108,858,738 - 108,861,015 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014105,331,167 - 105,333,444 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd14107,992,004 - 107,994,281 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive14106,628,475 - 106,630,751 (-)NCBILyon_Normotensive
Lyon_Hypertensive14108,174,580 - 108,176,856 (-)NCBILyon_Hypertensive
F344_StmMcwi14106,997,054 - 106,999,330 (-)NCBIF344_StmMcwi
Rnor_6.014113,966,163 - 113,968,440 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5138,628,482 - 138,629,026 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl14113,966,611 - 113,968,268 (-)Ensemblrn6Rnor6.0
Rnor_5.014113,632,952 - 113,634,814 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera14102,162,278 - 102,164,555 (-)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
7,12-dimethyltetraphene  (ISO)
acetylsalicylic acid  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
amosite asbestos  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
Azaspiracid  (ISO)
azoxystrobin  (ISO)
benzatropine  (ISO)
benzene  (EXP)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cannabidiol  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
Cyclopamine  (ISO)
cypermethrin  (ISO)
DDT  (EXP)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dinophysistoxin 1  (ISO)
enzalutamide  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (EXP,ISO)
fenpyroximate  (ISO)
fenthion  (ISO)
fipronil  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
gentamycin  (EXP)
glafenine  (EXP)
haloperidol  (ISO)
hydralazine  (ISO)
indometacin  (EXP)
isoprenaline  (ISO)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methamphetamine  (EXP)
methylparaben  (ISO)
naphthalene  (ISO)
nefazodone  (EXP)
nicotine  (ISO)
nimesulide  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
picoxystrobin  (ISO)
potassium dichromate  (ISO)
pyrimidifen  (ISO)
rac-lactic acid  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
tetrachloromethane  (EXP)
tolcapone  (EXP)
triamcinolone acetonide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Mass spectrometric analysis of 40 S ribosomal proteins from Rat-1 fibroblasts. Louie DF, etal., J Biol Chem. 1996 Nov 8;271(45):28189-98.
4. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Ubiquitin and ubiquitin-conjugated protein expression in the rat cerebral cortex and hippocampus following traumatic brain injury (TBI). Yao X, etal., Brain Res. 2007 Nov 28;1182:116-22. Epub 2007 Sep 14.
Additional References at PubMed
PMID:925037   PMID:7488009   PMID:8031840   PMID:8706699   PMID:12477932   PMID:15057822   PMID:15632090   PMID:15883184   PMID:16502470   PMID:16791210   PMID:17634366   PMID:19190083  
PMID:19199708   PMID:19946888   PMID:20458337   PMID:21630459   PMID:22658674   PMID:22681889   PMID:23376485   PMID:23533145   PMID:35352799  


Genomics

Comparative Map Data
Rps27a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814107,486,664 - 107,488,941 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl14107,486,664 - 107,488,941 (-)EnsemblGRCr8
GRCr8 Ensembl5158,937,842 - 158,938,561 (+)EnsemblGRCr8
GRCr8 Ensembl5138,465,088 - 138,466,080 (-)EnsemblGRCr8
mRatBN7.214103,285,734 - 103,288,011 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14103,285,734 - 103,288,011 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl5153,655,012 - 153,655,482 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl5133,180,212 - 133,180,805 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx14107,625,246 - 107,627,522 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014108,858,738 - 108,861,015 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014105,331,167 - 105,333,444 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd14107,992,004 - 107,994,281 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive14106,628,475 - 106,630,751 (-)NCBILyon_Normotensive
Lyon_Hypertensive14108,174,580 - 108,176,856 (-)NCBILyon_Hypertensive
F344_StmMcwi14106,997,054 - 106,999,330 (-)NCBIF344_StmMcwi
Rnor_6.014113,966,163 - 113,968,440 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5138,628,482 - 138,629,026 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl14113,966,611 - 113,968,268 (-)Ensemblrn6Rnor6.0
Rnor_5.014113,632,952 - 113,634,814 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera14102,162,278 - 102,164,555 (-)NCBICelera
Cytogenetic Map14q22NCBI
RPS27A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38255,231,903 - 55,235,853 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl255,229,447 - 55,236,044 (+)Ensemblhg38GRCh38
GRCh37255,459,039 - 55,462,989 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36255,313,328 - 55,316,249 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34255,371,474 - 55,374,396NCBI
Celera255,299,565 - 55,303,515 (+)NCBICelera
Cytogenetic Map2p16.1NCBI
HuRef255,193,794 - 55,197,744 (+)NCBIHuRef
CHM1_1255,389,096 - 55,393,046 (+)NCBICHM1_1
T2T-CHM13v2.0255,229,133 - 55,233,083 (+)NCBIT2T-CHM13v2.0
Rps27a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391129,495,842 - 29,498,040 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1129,495,846 - 29,498,109 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381129,545,842 - 29,548,040 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1129,545,846 - 29,548,109 (-)Ensemblmm10GRCm38
MGSCv371129,445,842 - 29,448,040 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361129,445,842 - 29,448,040 (-)NCBIMGSCv36mm8
Celera1131,907,121 - 31,909,319 (-)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1116.79NCBI
Rps27a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542427,823,575 - 27,825,489 (-)Ensembl
ChiLan1.0NW_00495542427,823,575 - 27,825,489 (-)NCBIChiLan1.0ChiLan1.0
RPS27A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21271,090,568 - 71,094,414 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A71,094,520 - 71,098,128 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A55,389,243 - 55,392,914 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A56,529,856 - 56,533,527 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A56,530,349 - 56,533,527 (+)EnsemblpanPan2panpan1.1
RPS27A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11056,132,924 - 56,135,327 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1056,132,894 - 56,135,327 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1056,089,650 - 56,092,053 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01057,136,975 - 57,139,378 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1057,136,945 - 57,139,378 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11056,838,149 - 56,840,545 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01057,117,379 - 57,119,782 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01057,407,860 - 57,410,263 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rps27a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629226,938,453 - 26,940,987 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364911,630,128 - 1,635,952 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364911,630,172 - 1,632,839 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS27A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl385,986,501 - 85,992,503 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1385,989,609 - 85,992,257 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2390,773,810 - 90,776,492 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPS27A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11451,664,098 - 51,667,138 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1451,664,101 - 51,667,011 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604560,052,453 - 60,055,600 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps27a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248336,291,446 - 6,311,671 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248336,309,342 - 6,311,762 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rps27a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11197,165,178 - 97,167,236 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:25
Count of miRNA genes:23
Interacting mature miRNAs:24
Transcripts:ENSRNOT00000005872
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat

Markers in Region
RH128322  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18p12UniSTS
Cytogenetic Map14q22UniSTS
PMC280674P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14q22UniSTS
Cytogenetic MapXq21UniSTS
Cytogenetic Map19q11UniSTS
RH131424  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr814107,486,721 - 107,486,938 (+)Marker Load Pipeline
Rnor_5.014113,632,011 - 113,632,228NCBIRnor5.0
RGSC_v3.414110,559,267 - 110,559,483UniSTSRGSC3.4
Celera14102,162,336 - 102,162,552UniSTS
Cytogenetic Map14q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
25 23 116 278 182 180 118 117 118 12 574 289 11 237 126 152 62 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001305443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AABR07016777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM074661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X81839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000005872   ⟹   ENSRNOP00000005872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl14107,486,664 - 107,488,941 (-)Ensembl
mRatBN7.2 Ensembl14103,285,734 - 103,288,011 (-)Ensembl
Rnor_6.0 Ensembl14113,966,611 - 113,968,268 (-)Ensembl
RefSeq Acc Id: NM_001305443   ⟹   NP_001292372
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814107,486,664 - 107,488,885 (-)NCBI
mRatBN7.214103,285,734 - 103,287,955 (-)NCBI
Dahl_SR_JrHsd14107,992,004 - 107,994,225 (-)NCBI
Lyon_Normotensive14106,628,475 - 106,630,695 (-)NCBI
Lyon_Hypertensive14108,174,580 - 108,176,800 (-)NCBI
F344_StmMcwi14106,997,054 - 106,999,274 (-)NCBI
Rnor_6.014113,966,163 - 113,968,384 (-)NCBI
Celera14102,162,278 - 102,164,499 (-)NCBI
Sequence:
RefSeq Acc Id: NM_031113   ⟹   NP_112375
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814107,486,664 - 107,488,941 (-)NCBI
mRatBN7.214103,285,734 - 103,288,011 (-)NCBI
Dahl_SR_JrHsd14107,992,004 - 107,994,281 (-)NCBI
Lyon_Normotensive14106,628,475 - 106,630,751 (-)NCBI
Lyon_Hypertensive14108,174,580 - 108,176,856 (-)NCBI
F344_StmMcwi14106,997,054 - 106,999,330 (-)NCBI
Rnor_6.014113,966,163 - 113,968,440 (-)NCBI
Celera14102,162,278 - 102,164,555 (-)NCBI
Sequence:
RefSeq Acc Id: NP_112375   ⟸   NM_031113
- UniProtKB: P62982 (UniProtKB/Swiss-Prot),   Q6PED0 (UniProtKB/TrEMBL),   A0A8I6G8I7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001292372   ⟸   NM_001305443
- UniProtKB: P62982 (UniProtKB/Swiss-Prot),   Q6PED0 (UniProtKB/TrEMBL),   A0A8I6G8I7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005872   ⟸   ENSRNOT00000005872
Protein Domains
Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62982-F1-model_v2 AlphaFold P62982 1-156 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:6489478 AgrOrtholog
BioCyc Gene G2FUF-14649 BioCyc
Ensembl Genes ENSRNOG00000004426 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000034246 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000051047 Ensembl
Ensembl Transcript ENSRNOT00000005872 ENTREZGENE
  ENSRNOT00000005872.4 UniProtKB/Swiss-Prot
  ENSRNOT00000049535.3 UniProtKB/Swiss-Prot
Gene3D-CATH 6.20.50.150 UniProtKB/Swiss-Prot
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
InterPro Ribosomal_S27a UniProtKB/Swiss-Prot
  Ribosomal_zn-bd UniProtKB/Swiss-Prot
  S27a-like_sf UniProtKB/Swiss-Prot
  Ubiquitin UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot
  Ubiquitin_CS UniProtKB/Swiss-Prot
  Ubiquitin_dom UniProtKB/Swiss-Prot
  Ubiquitin_ubiquitin-like UniProtKB/Swiss-Prot
KEGG Report rno:100912032 UniProtKB/Swiss-Prot
NCBI Gene LOC100912032 ENTREZGENE
PANTHER UBIQUITIN UniProtKB/Swiss-Prot
Pfam Ribosomal_S27 UniProtKB/Swiss-Prot
  ubiquitin UniProtKB/Swiss-Prot
PhenoGen Rps27a PhenoGen
PRINTS UBIQUITIN UniProtKB/Swiss-Prot
PROSITE UBIQUITIN_1 UniProtKB/Swiss-Prot
  UBIQUITIN_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000004426 RatGTEx
  ENSRNOG00000034246 RatGTEx
  ENSRNOG00000051047 RatGTEx
SMART Ribosomal_S27 UniProtKB/Swiss-Prot
  UBQ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot
  SSF57829 UniProtKB/Swiss-Prot
UniProt A0A8I6G8I7 ENTREZGENE, UniProtKB/TrEMBL
  P62982 ENTREZGENE
  Q6PED0 ENTREZGENE, UniProtKB/TrEMBL
  RS27A_RAT UniProtKB/Swiss-Prot
UniProt Secondary P02248 UniProtKB/Swiss-Prot
  P02249 UniProtKB/Swiss-Prot
  P02250 UniProtKB/Swiss-Prot
  P49664 UniProtKB/Swiss-Prot
  P62989 UniProtKB/Swiss-Prot
  Q29120 UniProtKB/Swiss-Prot
  Q63446 UniProtKB/Swiss-Prot
  Q91887 UniProtKB/Swiss-Prot
  Q91888 UniProtKB/Swiss-Prot
  Q9D2W3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-03-16 Rps27a  ribosomal protein S27a  LOC100912032  ubiquitin-40S ribosomal protein S27a-like  Name and Symbol changed 629549 APPROVED
2012-07-05 LOC100912032  ubiquitin-40S ribosomal protein S27a-like      Symbol and Name status set to provisional 70820 PROVISIONAL