Rps27a-ps11 (ribosomal protein S27a, pseudogene 11) - Rat Genome Database

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Gene: Rps27a-ps11 (ribosomal protein S27a, pseudogene 11) Rattus norvegicus
Analyze
Symbol: Rps27a-ps11
Name: ribosomal protein S27a, pseudogene 11
RGD ID: 9854660
Description: This locus was determined to be a processed pseudogene of Rps27a (GeneID:100912032) since it has a similar nucleotide sequence to the coding region of the parental gene, but contains no intact open reading frame. Consistent with this locus being a processed pseudogene, it contains only exonic sequences relative to the parental gene. [provided by RefSeq, Apr 2015]
Type: pseudo
RefSeq Status: INFERRED
Previously known as: LOC105650980; ribosomal protein S27a pseudogene
Related Functional Gene: Rps27a  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,601,849 - 1,602,400 (+)NCBIGRCr8
mRatBN7.271,017,323 - 1,017,874 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx73,779,499 - 3,780,050 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,655,490 - 5,656,041 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
Rnor_6.073,012,115 - 3,012,649 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera7887,676 - 888,210 (+)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Rps27a-ps11
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat


Expression


Sequence



Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-35349 BioCyc
NCBI Gene LOC105650980 ENTREZGENE
PhenoGen Rps27a-ps11 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-05-18 Rps27a-ps11  ribosomal protein S27a, pseudogene 11  LOC105650980  ribosomal protein S27a pseudogene  Name and Symbol changed 629549 APPROVED
2015-04-07 LOC105650980  ribosomal protein S27a pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL