Chrd (chordin) - Rat Genome Database

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Gene: Chrd (chordin) Rattus norvegicus
Analyze
Symbol: Chrd
Name: chordin
RGD ID: 620181
Description: Predicted to enable BMP binding activity; heparin binding activity; and proteoglycan binding activity. Predicted to be involved in several processes, including cell surface receptor signaling pathway; circulatory system development; and modulation of chemical synaptic transmission. Predicted to act upstream of or within several processes, including gastrulation; negative regulation of osteoblast differentiation; and osteoblast differentiation. Predicted to be located in presynapse. Predicted to be active in cell surface and extracellular space. Orthologous to human CHRD (chordin); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; transforming growth factor-beta superfamily mediated signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,676,400 - 93,685,584 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1193,676,400 - 93,685,278 (-)EnsemblGRCr8
mRatBN7.21180,171,994 - 80,181,166 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,171,994 - 80,180,673 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1188,894,706 - 88,903,406 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01181,548,122 - 81,556,822 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01180,609,184 - 80,617,884 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01183,858,503 - 83,867,543 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,858,503 - 83,867,203 (-)Ensemblrn6Rnor6.0
Rnor_5.01186,930,421 - 86,939,186 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41182,401,701 - 82,410,401 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1179,011,743 - 79,020,443 (-)NCBICelera
RGSC_v3.11182,460,992 - 82,462,358 (-)NCBI
Cytogenetic Map11q23NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
artery morphogenesis  (ISO)
BMP signaling pathway  (IEA,ISO)
cell population proliferation  (ISO)
central nervous system development  (ISO)
chordate pharynx development  (ISO)
cranial skeletal system development  (ISO)
descending aorta development  (ISO)
dorsal/ventral pattern formation  (IBA,ISO)
embryonic axis specification  (ISO)
embryonic heart tube development  (ISO)
epithelial cell fate commitment  (ISO)
exploration behavior  (ISO)
fibroblast growth factor receptor signaling pathway  (ISO)
forebrain development  (ISO)
gastrulation with mouth forming second  (ISO)
gene expression  (ISO)
in utero embryonic development  (ISO)
long-term synaptic potentiation  (ISO)
maintenance of protein location  (ISO)
mesenchymal cell fate commitment  (ISO)
mesoderm formation  (ISO)
negative regulation of BMP signaling pathway  (IBA,IEA,ISO)
negative regulation of cell migration  (IEA,ISO)
negative regulation of osteoblast differentiation  (IEA,ISO)
neural crest formation  (ISO)
neuron fate commitment  (ISO)
osteoblast differentiation  (ISO)
pattern specification process  (IEA,ISO)
positive regulation of cell adhesion  (IEA,ISO)
positive regulation of mesenchymal cell proliferation  (IEA,ISO)
presynaptic modulation of chemical synaptic transmission  (ISO)
protein import  (ISO)
regulation of neuronal synaptic plasticity  (ISO)
short-term synaptic potentiation  (ISO)
skeletal system development  (ISO)
smoothened signaling pathway  (ISO)
spinal cord dorsal/ventral patterning  (IEA,ISO)
synapse organization  (ISO)
system development  (IEA)
venous blood vessel morphogenesis  (ISO)
visual learning  (ISO)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Bone morphogenetic protein-2 and -4 limit the number of enteric neurons but promote development of a TrkC-expressing neurotrophin-3-dependent subset. Chalazonitis A, etal., J Neurosci 2004 Apr 28;24(17):4266-82.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10688202   PMID:11472837   PMID:11784076   PMID:12397106   PMID:12810603   PMID:15057822   PMID:15381701   PMID:15780974   PMID:16449796   PMID:18533030   PMID:19850029   PMID:24231736  
PMID:27546891  


Genomics

Comparative Map Data
Chrd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,676,400 - 93,685,584 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1193,676,400 - 93,685,278 (-)EnsemblGRCr8
mRatBN7.21180,171,994 - 80,181,166 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,171,994 - 80,180,673 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1188,894,706 - 88,903,406 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01181,548,122 - 81,556,822 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01180,609,184 - 80,617,884 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01183,858,503 - 83,867,543 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,858,503 - 83,867,203 (-)Ensemblrn6Rnor6.0
Rnor_5.01186,930,421 - 86,939,186 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41182,401,701 - 82,410,401 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1179,011,743 - 79,020,443 (-)NCBICelera
RGSC_v3.11182,460,992 - 82,462,358 (-)NCBI
Cytogenetic Map11q23NCBI
CHRD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383184,380,054 - 184,390,739 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3184,379,381 - 184,390,736 (+)Ensemblhg38GRCh38
GRCh373184,097,842 - 184,108,527 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363185,580,555 - 185,590,311 (+)NCBIBuild 36Build 36hg18NCBI36
Build 343185,580,562 - 185,590,320NCBI
Celera3182,538,936 - 182,548,675 (+)NCBICelera
Cytogenetic Map3q27.1NCBI
HuRef3181,483,159 - 181,513,643 (+)NCBIHuRef
CHM1_13184,062,275 - 184,072,053 (+)NCBICHM1_1
T2T-CHM13v2.03187,189,309 - 187,199,979 (+)NCBIT2T-CHM13v2.0
Chrd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391620,551,528 - 20,561,132 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1620,551,877 - 20,561,134 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381620,731,425 - 20,742,384 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1620,733,127 - 20,742,384 (+)Ensemblmm10GRCm38
MGSCv371620,733,200 - 20,742,457 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361620,646,670 - 20,655,925 (+)NCBIMGSCv36mm8
Celera1621,298,477 - 21,307,717 (+)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1612.51NCBI
Chrd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542023,112,093 - 23,120,036 (-)Ensembl
ChiLan1.0NW_00495542023,111,690 - 23,120,038 (-)NCBIChiLan1.0ChiLan1.0
CHRD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22182,252,887 - 182,262,820 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13182,257,731 - 182,267,537 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03181,417,140 - 181,460,236 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13189,899,342 - 189,908,573 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3189,898,856 - 189,908,573 (+)EnsemblpanPan2panpan1.1
CHRD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13417,255,770 - 17,264,776 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3417,255,562 - 17,271,713 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3421,341,312 - 21,350,291 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03417,163,252 - 17,172,231 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3417,163,252 - 17,171,973 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13417,200,125 - 17,209,104 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03417,196,194 - 17,205,174 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03417,425,160 - 17,434,173 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Chrd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602119,406,169 - 119,415,345 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365785,498,887 - 5,507,198 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365785,498,473 - 5,507,195 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHRD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13122,266,626 - 122,277,645 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113122,266,632 - 122,277,513 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213131,758,103 - 131,767,009 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHRD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1155,030,618 - 5,040,399 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl155,030,457 - 5,039,991 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606313,808,558 - 13,818,236 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chrd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473072,201,644 - 72,209,843 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473072,201,239 - 72,209,843 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Chrd
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v145,555,458 - 5,565,071 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:268
Count of miRNA genes:172
Interacting mature miRNAs:188
Transcripts:ENSRNOT00000002394
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)119046178196556255Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)118295102896351019Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 65 59 6 329 165 11 140 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_057134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005490963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005490964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB073715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D86581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000002394   ⟹   ENSRNOP00000002394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1193,676,400 - 93,685,278 (-)Ensembl
mRatBN7.2 Ensembl1180,171,994 - 80,180,673 (-)Ensembl
Rnor_6.0 Ensembl1183,858,503 - 83,867,203 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000163275   ⟹   ENSRNOP00000104165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1193,676,400 - 93,685,278 (-)Ensembl
RefSeq Acc Id: NM_057134   ⟹   NP_476475
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,676,400 - 93,685,100 (-)NCBI
mRatBN7.21180,171,994 - 80,180,694 (-)NCBI
Rnor_6.01183,858,503 - 83,867,203 (-)NCBI
Rnor_5.01186,930,421 - 86,939,186 (-)NCBI
RGSC_v3.41182,401,701 - 82,410,401 (-)RGD
Celera1179,011,743 - 79,020,443 (-)RGD
Sequence:
RefSeq Acc Id: XM_006248556   ⟹   XP_006248618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,676,400 - 93,685,584 (-)NCBI
mRatBN7.21180,171,994 - 80,181,166 (-)NCBI
Rnor_6.01183,858,503 - 83,867,543 (-)NCBI
Rnor_5.01186,930,421 - 86,939,186 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248557   ⟹   XP_006248619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,676,400 - 93,685,584 (-)NCBI
mRatBN7.21180,171,994 - 80,181,166 (-)NCBI
Rnor_6.01183,858,503 - 83,867,543 (-)NCBI
Rnor_5.01186,930,421 - 86,939,186 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597850   ⟹   XP_017453339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,678,563 - 93,685,584 (-)NCBI
mRatBN7.21180,174,157 - 80,181,166 (-)NCBI
Rnor_6.01183,860,678 - 83,867,543 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039087914   ⟹   XP_038943842
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,676,400 - 93,684,809 (-)NCBI
mRatBN7.21180,171,994 - 80,180,397 (-)NCBI
RefSeq Acc Id: XM_039087915   ⟹   XP_038943843
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,680,876 - 93,685,584 (-)NCBI
mRatBN7.21180,176,691 - 80,181,166 (-)NCBI
RefSeq Acc Id: XM_063270248   ⟹   XP_063126318
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,676,400 - 93,685,584 (-)NCBI
RefSeq Acc Id: XM_063270249   ⟹   XP_063126319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,676,400 - 93,685,584 (-)NCBI
RefSeq Acc Id: XR_005490963
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,677,558 - 93,685,584 (-)NCBI
mRatBN7.21180,173,149 - 80,181,166 (-)NCBI
RefSeq Acc Id: XR_005490964
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,680,725 - 93,685,584 (-)NCBI
mRatBN7.21180,176,317 - 80,181,166 (-)NCBI
RefSeq Acc Id: NP_476475   ⟸   NM_057134
- Peptide Label: precursor
- UniProtKB: Q63148 (UniProtKB/Swiss-Prot),   A6JS78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248618   ⟸   XM_006248556
- Peptide Label: isoform X1
- UniProtKB: Q63148 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006248619   ⟸   XM_006248557
- Peptide Label: isoform X7
- UniProtKB: Q63148 (UniProtKB/Swiss-Prot),   A0A140TA94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453339   ⟸   XM_017597850
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSRNOP00000002394   ⟸   ENSRNOT00000002394
RefSeq Acc Id: XP_038943842   ⟸   XM_039087914
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038943843   ⟸   XM_039087915
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063126319   ⟸   XM_063270249
- Peptide Label: isoform X3
- UniProtKB: Q63148 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063126318   ⟸   XM_063270248
- Peptide Label: isoform X2
- UniProtKB: Q63148 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000104165   ⟸   ENSRNOT00000163275
Protein Domains
CHRD   VWFC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63148-F1-model_v2 AlphaFold Q63148 1-951 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698267
Promoter ID:EPDNEW_R8792
Type:single initiation site
Name:Chrd_1
Description:chordin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01183,867,196 - 83,867,256EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620181 AgrOrtholog
BioCyc Gene G2FUF-20757 BioCyc
Ensembl Genes ENSRNOG00000001750 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000002394 ENTREZGENE
  ENSRNOT00000163275 ENTREZGENE
Gene3D-CATH 6.20.200.20 UniProtKB/Swiss-Prot
InterPro Chordin UniProtKB/Swiss-Prot
  Chordin-like_regulators UniProtKB/Swiss-Prot
  CHRD UniProtKB/Swiss-Prot
  VWF_dom UniProtKB/Swiss-Prot
NCBI Gene 117275 ENTREZGENE
PANTHER CHORDIN UniProtKB/Swiss-Prot
  CHORDIN UniProtKB/Swiss-Prot
Pfam CHRD UniProtKB/Swiss-Prot
  VWC UniProtKB/Swiss-Prot
PhenoGen Chrd PhenoGen
PIRSF Chordin UniProtKB/Swiss-Prot
PROSITE CHRD UniProtKB/Swiss-Prot
  VWFC_1 UniProtKB/Swiss-Prot
  VWFC_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001750 RatGTEx
SMART CHRD UniProtKB/Swiss-Prot
  VWC UniProtKB/Swiss-Prot
Superfamily-SCOP FnI-like domain UniProtKB/Swiss-Prot
UniProt A0A140TA94 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LHN6_RAT UniProtKB/TrEMBL
  A6JS78 ENTREZGENE, UniProtKB/TrEMBL
  CHRD_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-08-06 Chrd  chordin      Symbol and Name status set to provisional 70820 PROVISIONAL