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Gene Ontology Annotations
Gene Ontology AnnotationsBiological Process Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | BMP signaling pathway involved in spinal cord dorsal/ventral patterning | | ISO | UniProtKB:Q9H2X0 | 2290270 | MGI:MGI:4834177 | MGI | MGI:MGI:4834177 | central nervous system development | | IMP | MGI:MGI:2157350 | 2290270 | MGI:MGI:1353146|PMID:10688202 | MGI | MGI:MGI:1353146 PMID:10688202 | dorsal/ventral pattern formation | | IMP | MGI:MGI:2157350 | 2290270 | MGI:MGI:2662951|PMID:12810603 | MGI | MGI:MGI:2662951 PMID:12810603 | forebrain development | | IMP | MGI:MGI:2157350 | 2290270 | MGI:MGI:2389288|PMID:12397106 | MGI | MGI:MGI:2389288 PMID:12397106 | gastrulation with mouth forming second | | IMP | MGI:MGI:2157350 | 2290270 | MGI:MGI:2662951|PMID:12810603 | MGI | MGI:MGI:2662951 PMID:12810603 | mesoderm formation | | IMP | MGI:MGI:2157350 | 2290270 | MGI:MGI:2662951|PMID:12810603 | MGI | MGI:MGI:2662951 PMID:12810603 | multicellular organismal development | | IEA | UniProtKB-KW:KW-0217 | 2290270 | MGI:MGI:1354194 | UniProtKB | MGI:MGI:1354194 | negative regulation of BMP signaling pathway | | IDA | | 2290270 | MGI:MGI:4429763|PMID:19850029 | MGI | MGI:MGI:4429763 PMID:19850029 | negative regulation of BMP signaling pathway | | ISO | UniProtKB:Q9H2X0 | 2290270 | MGI:MGI:4834177 | MGI | MGI:MGI:4834177 | negative regulation of BMP signaling pathway | | IDA | | 2290270 | MGI:MGI:3577114|PMID:15780974 | MGI | MGI:MGI:3577114 PMID:15780974 | negative regulation of cell migration | | ISO | UniProtKB:Q9H2X0 | 2290270 | MGI:MGI:4834177 | MGI | MGI:MGI:4834177 | negative regulation of osteoblast differentiation | | IDA | | 2290270 | MGI:MGI:3577114|PMID:15780974 | MGI | MGI:MGI:3577114 PMID:15780974 | negative regulation of osteoblast differentiation | | ISO | UniProtKB:Q9H2X0 | 2290270 | MGI:MGI:4834177 | MGI | MGI:MGI:4834177 | osteoblast differentiation | | IDA | | 2290270 | MGI:MGI:3525426|PMID:15381701 | MGI | MGI:MGI:3525426 PMID:15381701 | pattern specification process | | IMP | MGI:MGI:2157350 | 2290270 | MGI:MGI:2389288|PMID:12397106 | MGI | MGI:MGI:2389288 PMID:12397106 | positive regulation of cell adhesion | | ISO | UniProtKB:Q9H2X0 | 2290270 | MGI:MGI:4834177 | MGI | MGI:MGI:4834177 | positive regulation of mesenchymal cell proliferation | | ISO | UniProtKB:Q9H2X0 | 2290270 | MGI:MGI:4834177 | MGI | MGI:MGI:4834177 | skeletal system development | | IMP | MGI:MGI:2157350 | 2290270 | MGI:MGI:2156257|PMID:11784076 | MGI | MGI:MGI:2156257 PMID:11784076 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Pathway Annotations| External Database Links | |
| KEGG Pathway | TGF-beta signaling pathway |
| Pathway Interaction Database | BMP receptor signaling (PID:200144) |
Phenotype Annotations
Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway Annotations
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| External Database Links | |
| KEGG Pathway | TGF-beta signaling pathway |
| Pathway Interaction Database | BMP receptor signaling (PID:200144) |
Phenotype Annotations
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References - curated| 1. |
MGD data from the GO Consortium |
| 2. |
MGD IEA |
| 3. |
Okazaki Y, etal., Nature 2002 Dec 5;420(6915):563-73. |
| 4. |
Pipeline to import KEGG annotations from KEGG into RGD Pathway Ontology |
| 5. |
Pipeline to import Pathway Interaction Database annotations from NCI into RGD |
| 6. |
RGD automated import pipeline |
| 7. |
RGD automated import pipeline for gene-chemical interactions |
References - uncurated| PubMed | 10331975 |
| 10349636 | |
| 10373301 | |
| 10479448 | |
| 10524628 | |
| 10642791 | |
| 10688202 | |
| 10767089 | |
| 10769235 | |
| 11042159 | |
| 11076861 | |
| 11217851 | |
| 11260715 | |
| 11291865 | |
| 11306815 | |
| 11532921 | |
| 11566865 | |
| 11704830 | |
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| 11784076 | |
| 11969257 | |
| 12397106 | |
| 12414734 | |
| 12421925 | |
| 12477932 | |
| 12666204 | |
| 12808086 | |
| 12810603 | |
| 12842913 | |
| 12915318 | |
| 14502572 | |
| 14504233 | |
| 14516682 | |
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| 15013800 | |
| 15084457 | |
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| 15371327 | |
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| 16141072 | |
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| 18403408 | |
| 18550712 | |
| 18617531 | |
| 18789316 | |
| 19247433 | |
| 19615442 | |
| 19850029 | |
| 19852960 | |
| 19914233 | |
| 20450902 | |
| 20503368 | |
| 20508035 | |
| 20573697 | |
| 20730911 | |
| 20807528 | |
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| 21445260 | |
| 21645366 | |
| 22075149 | |
| 22076636 | |
| 22560297 | |
| 23475960 | |
| 8889548 | |
| 9449667 | |
| 9600941 | |
| 9620855 | |
| 9782094 |
RGD Disease Portals| Chrd has been annotated in the following RGD Disease Portals. |
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Comparative Map Data| Chrd (Mus musculus) |
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| CHRD (Homo sapiens) |
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| Chrd (Rattus norvegicus) |
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Position Markers| Chrd |
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| MARC_16893-16894:1020710585:1 |
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| Chrd |
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| Chrd |
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QTLs in Region (Mouse Genome Assembly Build 37)| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
Nucleotide Sequences| Nucleotide RefSeqs | NM_001278041 | (Get FASTA) | Search GEO for Microarray Profiles |
| NM_009893 | (Get FASTA) | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AAHY01126210 | (Get FASTA) | Search GEO for Microarray Profiles |
| AF069501 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF096276 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AI838093 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK077460 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK149445 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK165339 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK220310 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC145017 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC145018 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC145019 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC145696 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CH466521 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CT010490 | (Get FASTA) | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | NM_009893 | |||||||||||||||||||||||||
| RefSeq Status: | VALIDATED | |||||||||||||||||||||||||
| Type: | CODING | |||||||||||||||||||||||||
| Protein Acc Id: | NP_034023 | |||||||||||||||||||||||||
| Peptide Label: | precursor | |||||||||||||||||||||||||
| Position: |
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Protein Sequences| Protein RefSeqs | NP_001264970 | (Get FASTA) |
| NP_034023 | (Get FASTA) | |
| GenBank Protein | AAC68867 | (Get FASTA) |
| AAD19895 | (Get FASTA) | |
| AAI45697 | (Get FASTA) | |
| BAD90387 | (Get FASTA) | |
| BAE28881 | (Get FASTA) | |
| EDK97595 | (Get FASTA) | |
| EDK97596 | (Get FASTA) | |
| Q9Z0E2 | (Get FASTA) |
Promoters| RGD ID: | 6889416 | ||||||||||
| Promoter ID: | EPDNEW_M8159 | ||||||||||
| Type: | preliminary | ||||||||||
| Name: | Chrd_1 | ||||||||||
| Description: | chordin | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||||
| Position: |
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| RGD ID: | 6826908 | ||||||||||
| Promoter ID: | MM_KWN:20505 | ||||||||||
| Type: | Non-CpG | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | Brain | ||||||||||
| Transcripts: | OTTMUST00000049690 | ||||||||||
| Position: |
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External Database Links| Database | Acc Id | Source(s) |
| Ensembl Genes | ENSMUSG00000006958 | ENTREZGENE |
| Ensembl Protein | ENSMUSP00000007171 | ENTREZGENE |
| Ensembl Transcript | ENSMUST00000007171 | ENTREZGENE |
| Entrez Gene | 12667 | ENTREZGENE |
| Germonline | ENSMUSG00000006958 | |
| HomoloGene Group ID | 2774 | ENTREZGENE |
| InterPro | Chordin | UniProtKB/Swiss-Prot |
| CHRD | UniProtKB/Swiss-Prot | |
| VWF_C | UniProtKB/Swiss-Prot | |
| KEGG Report | mmu:12667 | ENTREZGENE, UniProtKB/Swiss-Prot |
| MGD | MGI:1313268 | ENTREZGENE |
| Pfam | CHRD | UniProtKB/Swiss-Prot |
| VWC | UniProtKB/Swiss-Prot | |
| PIRSF | Chordin | UniProtKB/Swiss-Prot |
| PROSITE | CHRD | UniProtKB/Swiss-Prot |
| VWFC_1 | UniProtKB/Swiss-Prot | |
| VWFC_2 | UniProtKB/Swiss-Prot | |
| SMART | CHRD | UniProtKB/Swiss-Prot |
| VWC | UniProtKB/Swiss-Prot | |
| UniGene | Mm.20457 | ENTREZGENE |
| UniProt | A2CG33_MOUSE | UniProtKB/TrEMBL |
| A6H5Z6_MOUSE | UniProtKB/TrEMBL | |
| CHRD_MOUSE | UniProtKB/Swiss-Prot | |
| Q3UEN0_MOUSE | UniProtKB/TrEMBL | |
| Q5DU60_MOUSE | UniProtKB/TrEMBL |
| More on Chrd | |
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Entrez Gene |
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Ensembl Gene |
![]() | Genome Browser |
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MGI Report |
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NCBI Map Viewer |
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Vista |
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Vista + UCSC |
| RGD Object Information | |
| RGD ID: | 1550370 |
| Created: | 2005-09-30 |
| Species: | Mus musculus |
| Last Modified: | 2013-05-21 |
| Status: | ACTIVE |
© Bioinformatics Program, HMGC at the Medical College of Wisconsin
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.




