Aif1 (allograft inflammatory factor 1) - Rat Genome Database

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Gene: Aif1 (allograft inflammatory factor 1) Rattus norvegicus
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Symbol: Aif1
Name: allograft inflammatory factor 1
RGD ID: 61924
Description: Predicted to enable actin filament binding activity and calcium ion binding activity. Involved in several processes, including cellular response to morphine; positive regulation of metabolic process; and positive regulation of muscle hyperplasia. Located in cytoplasm; lamellipodium; and perikaryon. Used to study type 1 diabetes mellitus. Biomarker of brain disease (multiple); glomerulonephritis; interstitial cystitis; meningoencephalitis; and motor neuron disease. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human AIF1 (allograft inflammatory factor 1); INTERACTS WITH (+)-pilocarpine; (S)-colchicine; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AIF-1; balloon angioplasty responsive transcript; balloon angioplasty-responsive transcript 1; BART-1; Bart1; iba1; ionized calcium binding adapter molecule 1; ionized calcium-binding adapter molecule 1; microglia response factor; mrf-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Aif1tm(EGFP)Apps  
Genetic Models: SD-Aif1tm(EGFP)Apps/Mmmc
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,651,435 - 3,657,341 (+)NCBIGRCr8
mRatBN7.2203,646,784 - 3,652,670 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,646,777 - 3,652,668 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,350,088 - 4,351,997 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,712,144 - 3,714,054 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,249,928 - 4,251,828 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,161,350 - 5,167,176 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,161,333 - 5,166,448 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,234,609 - 7,240,454 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,714,428 - 3,716,327 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1203,714,654 - 3,716,552NCBI
Celera204,373,127 - 4,375,026 (-)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
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Original Reference(s)
Aif1RatAlcohol-Induced Disorders, Nervous System  IEP 2313030protein:increased expression:cortex and hippocampus (rat)RGD 
Aif1RatAlzheimer's disease  ISOAif1 (Mus musculus)2313023protein:altered expression:hippocampus (mouse)RGD 
Aif1RatAlzheimer's disease  ISOAIF1 (Homo sapiens)2313045mRNA:increased expression:frontal cortex (human)RGD 
Aif1Ratarteriosclerosis  ISOAif1 (Mus musculus)2313033 RGD 
Aif1RatBrain Hypoxia-Ischemia  IEP 2313021protein:increased expression:right cerebral hemisphere (rat)RGD 
Aif1Ratbrain infarction  IEP 2313025protein:increased expression:brain subventricular zone (rat)RGD 
Aif1Ratbrain infarction  ISOAIF1 (Homo sapiens)2313026protein:increased expression:brain white matter (human)RGD 
Aif1RatBrain Injuries  IEP 2313020protein:increased expression:cerebral cortex (rat)RGD 
Aif1Ratbrain ischemia  IEP 2313032protein:increased expression:cerebral cortex (rat)RGD 
Aif1Ratcerebral palsy  IEP 2313028protein:increased expression:corpus callosum (rat)RGD 
Aif1Ratepilepsy  IEP 2313039protein:increased expression:brainRGD 
Aif1RatExperimental Autoimmune Encephalomyelitis  IEP 2313022protein:altered expression:spinal cord (rat)RGD 
Aif1RatExperimental Autoimmune Neuritis  IEP 2313042protein:increased expression:spinal cord (rat)RGD 
Aif1RatExperimental Radiation Injuries  IEP 2313024protein:decreased expression:brain (rat)RGD 
Aif1Ratglomerulonephritis  IEP 2313038protein:increased expression:kidney (rat)RGD 
Aif1RatHyperalgesia  IEP 2313035associated with Alcohol-Induced Disorders more ...RGD 
Aif1RatHypoglossal Nerve Injuries  IEP 704401 RGD 
Aif1RatInflammation  IEP 2313027protein:increased expression:dentate gyrus (rat)RGD 
Aif1Ratinterstitial cystitis treatmentIEP 405295490 RGD 
Aif1Ratmeningoencephalitis  IEP 2313041protein:increased expression:brain (rat)RGD 
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Original Reference(s)
Aif1Ratmegacolon  ISOAIF1 (Homo sapiens)8554872ClinVar Annotator: match by term: MegacolonClinVarPMID:21681106
Aif1Ratproteasome-associated autoinflammatory syndrome 1  ISOAIF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Proteasome-associated autoinflammatory syndrome 1ClinVarPMID:28492532
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Original Reference(s)
Aif1RatAnimal Disease Models  ISOAIF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:27093858
Aif1Ratessential hypertension  ISOAIF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:34453990
Aif1RatExperimental Liver Cirrhosis  ISOAIF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
Aif1RatHyperalgesia  ISOAIF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:27093858
Aif1Rathypertension  ISOAIF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:32147540
Aif1RatLewy body dementia  ISOAIF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19276553
Aif1RatParkinson's disease  ISOAIF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19276553
Aif1RatSubarachnoid Hemorrhage  ISOAIF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:27157545
Aif1Rattrigeminal neuralgia  ISOAIF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:27093858
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Original Reference(s)
Aif1Rat(+)-pilocarpine increases expressionEXP 6480464Pilocarpine results in increased expression of AIF1 proteinCTDPMID:18226170
Aif1Rat(1->4)-beta-D-glucan multiple interactionsISOAif1 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of AIF1 mRNACTDPMID:36331819
Aif1Rat(S)-colchicine decreases expressionEXP 6480464Colchicine results in decreased expression of AIF1 mRNACTDPMID:20624997
Aif1Rat1,1-dichloroethene increases expressionISOAif1 (Mus musculus)6480464vinylidene chloride results in increased expression of AIF1 mRNACTDPMID:26682919
Aif1Rat1,2-dimethylhydrazine increases expressionISOAif1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of AIF1 mRNACTDPMID:22206623
Aif1Rat1,2-dimethylhydrazine multiple interactionsISOAif1 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of AIF1 mRNACTDPMID:22206623
Aif1Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine multiple interactionsISOAif1 (Mus musculus)6480464amentoflavone inhibits the reaction [1-Methyl-4-phenyl-1 more ...CTDPMID:28185818 more ...
Aif1Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine increases expressionISOAif1 (Mus musculus)64804641-Methyl-4-phenyl-1 more ...CTDPMID:28185818 more ...
Aif1Rat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of AIF1 mRNACTDPMID:25380136
Aif1Rat17alpha-ethynylestradiol increases expressionISOAif1 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of AIF1 mRNACTDPMID:17942748
Aif1Rat17alpha-ethynylestradiol multiple interactionsISOAif1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of AIF1 mRNACTDPMID:17942748
Aif1Rat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of AIF1 mRNACTDPMID:17351261
Aif1Rat17alpha-ethynylestradiol affects expressionISOAif1 (Mus musculus)6480464Ethinyl Estradiol affects the expression of AIF1 mRNACTDPMID:17555576
Aif1Rat17beta-estradiol multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of AIF1 mRNA and [Estradiol co-treated with Progesterone] results in decreased expression of AIF1 proteinCTDPMID:21277368 and PMID:32741896
Aif1Rat17beta-estradiol decreases expressionISOAif1 (Mus musculus)6480464Estradiol results in decreased expression of AIF1 mRNACTDPMID:39298647
Aif1Rat17beta-estradiol 3-benzoate multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of AIF1 mRNACTDPMID:32741896
Aif1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOAIF1 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of AIF1 mRNACTDPMID:19684285
Aif1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of AIF1 mRNACTDPMID:34747641
Aif1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOAif1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of AIF1 mRNACTDPMID:24680724 and PMID:26377647
Aif1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOAif1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of AIF1 mRNACTDPMID:17942748

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Biological Process
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Original Reference(s)
Aif1Ratactin crosslink formation involved_inISOAif1 (Mus musculus)1624291 PMID:11500035RGDPMID:11500035
Aif1Ratactin filament bundle assembly involved_inISSUniProtKB:P550081600115GO_REF:0000024UniProtGO_REF:0000024
Aif1Ratactin filament bundle assembly acts_upstream_of_or_withinISOAif1 (Mus musculus)1624291 PMID:14756805RGDPMID:14756805
Aif1Ratactin filament bundle assembly involved_inIBAMGI:1343098 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Aif1Ratactin filament bundle assembly involved_inISOAIF1 (Homo sapiens)1624291 PMID:18699778RGDPMID:18699778
Aif1Ratactin filament polymerization involved_inISOAIF1 (Homo sapiens)1624291 PMID:16049345RGDPMID:16049345
Aif1Ratactin filament polymerization involved_inISSUniProtKB:P550081600115GO_REF:0000024UniProtGO_REF:0000024
Aif1Ratcellular response to hormone stimulus  IEP 61535interferon-gammaRGD 
Aif1Ratcellular response to hydroperoxide  IEP 2313019docosahexaenoic acid hydroperoxideRGD 
Aif1Ratcellular response to lipopolysaccharide  IEP 2313015 RGD 
Aif1Ratcellular response to morphine  IEP 2313012morphineRGD 
Aif1Ratcellular response to oxidative stress involved_inISOAIF1 (Homo sapiens)1624291 PMID:12887599RGDPMID:12887599
Aif1Ratcellular response to type II interferon involved_inIEP 61535PMID:7769138UniProt 
Aif1Ratcellular response to type II interferon involved_inISOAIF1 (Homo sapiens)1624291 PMID:9614071RGDPMID:9614071
Aif1Ratcerebellum development  IEP 704401 RGD 
Aif1Ratinflammatory response involved_inIEP 61535PMID:7769138UniProt 
Aif1Ratmacrophage activation involved_inNAS 61535PMID:7769138UniProt 
Aif1Ratnegative regulation of apoptotic process  IDA 2313017macrophagesRGD 
Aif1Ratnegative regulation of apoptotic process  IMP 2313017macrophagesRGD 
Aif1Ratnegative regulation of gene expression  IMP 231301710 proteins and including ADAM3RGD 
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Cellular Component
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Original Reference(s)
Aif1Ratactin filament located_inISSUniProtKB:P550081600115GO_REF:0000024UniProtGO_REF:0000024
Aif1Ratactin filament located_inISOAif1 (Mus musculus)1624291 PMID:14756805RGDPMID:14756805
Aif1Ratactin filament located_inIBAPANTHER:PTN000039781 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Aif1Ratactin filament located_inISOAIF1 (Homo sapiens)1624291 PMID:18699778RGDPMID:18699778
Aif1Ratcell projection  IDA 2313011 RGD 
Aif1Ratcell projection located_inIEAUniProtKB-KW:KW-09661600115GO_REF:0000043UniProtGO_REF:0000043
Aif1Ratcell projection located_inIEAUniProtKB-SubCell:SL-02801600115GO_REF:0000044UniProtGO_REF:0000044
Aif1Ratcytoplasm located_inISOAIF1 (Homo sapiens)1624291 PMID:12887599 and PMID:28601280RGDPMID:12887599 and PMID:28601280
Aif1Ratcytoplasm located_inISOAif1 (Mus musculus)1624291 PMID:10934045 and PMID:14756805RGDPMID:10934045 and PMID:14756805
Aif1Ratcytoplasm located_inIDA 61535PMID:7769138UniProt 
Aif1Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Aif1Ratcytoskeleton located_inIEAUniProtKB-KW:KW-02061600115GO_REF:0000043UniProtGO_REF:0000043
Aif1Ratcytoskeleton located_inIEAUniProtKB-SubCell:SL-00901600115GO_REF:0000044UniProtGO_REF:0000044
Aif1Ratcytosol located_inISSUniProtKB:P550081600115GO_REF:0000024UniProtGO_REF:0000024
Aif1Ratcytosol located_inISOAIF1 (Homo sapiens)1624291 PMID:22116621RGDPMID:22116621
Aif1Ratglial cell projection located_inISOAif1 (Mus musculus)1624291 PMID:14756805RGDPMID:14756805
Aif1Ratlamellipodium located_inISOAif1 (Mus musculus)1624291 PMID:10934045RGDPMID:10934045
Aif1Ratlamellipodium  IDA 2313019 RGD 
Aif1Ratlamellipodium located_inISSUniProtKB:O702001600115GO_REF:0000024UniProtGO_REF:0000024
Aif1Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
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Molecular Function
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Reference Title
Reference Citation
1. CD4 microglial expression correlates with spontaneous clinical improvement in the acute Lewis rat EAE model. Almolda B, etal., J Neuroimmunol. 2009 Apr 30;209(1-2):65-80. Epub 2009 Feb 26.
2. Isolation and characterization of BART-1: A novel balloon angioplasty responsive transcript in rat carotid arteries. Autieri MV, etal., DNA Cell Biol 1996 Apr;15(4):297-304.
3. Use of differential display to identify differentially expressed mRNAs induced by rat carotid artery balloon angioplasty. Autieri MV, etal., Lab Invest 1995 Jun;72(6):656-61.
4. Experimental autoimmune neuritis induces differential microglia activation in the rat spinal cord. Beiter T, etal., J Neuroimmunol. 2005 Mar;160(1-2):25-31. Epub 2004 Dec 15.
5. Neuregulin-1-ErbB signaling promotes microglia activation contributing to mechanical allodynia of cyclophosphamide-induced cystitis. Chen JL, etal., Neurourol Urodyn. 2019 Jun;38(5):1250-1260. doi: 10.1002/nau.24005. Epub 2019 Apr 15.
6. Identification, isolation, and characterization of daintain (allograft inflammatory factor 1), a macrophage polypeptide with effects on insulin secretion and abundantly present in the pancreas of prediabetic BB rats. Chen ZW, etal., Proc Natl Acad Sci U S A. 1997 Dec 9;94(25):13879-84.
7. Genetic variants of the HLA-A, HLA-B and AIF1 loci show independent associations with type 1 diabetes in Norwegian families. Eike MC, etal., Genes Immun. 2009 Mar;10(2):141-50. Epub 2008 Nov 6.
8. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
9. Developmental motor deficits induced by combined fetal exposure to lipopolysaccharide and early neonatal hypoxia/ischemia: a novel animal model for cerebral palsy in very premature infants. Girard S, etal., Neuroscience. 2009 Jan 23;158(2):673-82. Epub 2008 Oct 30.
10. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
11. Experimental sepsis-associated encephalopathy is accompanied by altered cerebral blood perfusion and water diffusion and related to changes in cyclooxygenase-2 expression and glial cell morphology but not to blood-brain barrier breakdown. Griton M, etal., Brain Behav Immun. 2020 Jan;83:200-213. doi: 10.1016/j.bbi.2019.10.012. Epub 2019 Oct 14.
12. Brief, low frequency stimulation of rat peripheral C-fibres evokes prolonged microglial-induced central sensitization in adults but not in neonates. Hathway GJ, etal., Pain. 2009 Apr 30.
13. Expression of allograft inflammatory factor-1 and haeme oxygenase-1 in brains of rats infected with the neurotropic Borna disease virus. Herden C, etal., Neuropathol Appl Neurobiol. 2005 Oct;31(5):512-21.
14. Warm ischemia-induced alterations in oxidative and inflammatory proteins in hepatic Kupffer cells in rats. Hirsch J, etal., Mol Cell Proteomics. 2006 Jun;5(6):979-86. Epub 2006 Feb 24.
15. Morphine enhances microglial migration through modulation of P2X4 receptor signaling. Horvath RJ and DeLeo JA, J Neurosci. 2009 Jan 28;29(4):998-1005.
16. Differential migration, LPS-induced cytokine, chemokine, and NO expression in immortalized BV-2 and HAPI cell lines and primary microglial cultures. Horvath RJ, etal., J Neurochem. 2008 Oct;107(2):557-69. Epub 2008 Sep 18.
17. Inflammation regulates functional integration of neurons born in adult brain. Jakubs K, etal., J Neurosci. 2008 Nov 19;28(47):12477-88.
18. Environment matters: synaptic properties of neurons born in the epileptic adult brain develop to reduce excitability. Jakubs K, etal., Neuron. 2006 Dec 21;52(6):1047-59.
19. Irradiation-induced loss of microglia in the young brain. Kalm M, etal., J Neuroimmunol. 2009 Jan 3;206(1-2):70-5. Epub 2008 Dec 13.
20. Bone marrow-derived mesenchymal stem cells reduce brain amyloid-beta deposition and accelerate the activation of microglia in an acutely induced Alzheimer's disease mouse model. Lee JK, etal., Neurosci Lett. 2009 Jan 30;450(2):136-41. Epub 2008 Dec 6.
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PMID:8713135   PMID:9614071   PMID:10934045   PMID:11500035   PMID:11557666   PMID:12477932   PMID:12887599   PMID:14756805   PMID:15060004   PMID:15117732   PMID:15575896   PMID:16049345  
PMID:16987989   PMID:17011575   PMID:17565360   PMID:18699778   PMID:19745784   PMID:19815232   PMID:19861972   PMID:20572385   PMID:22116621   PMID:23701965   PMID:24571083   PMID:24796669  
PMID:26713069   PMID:28601280   PMID:29864618   PMID:33343805   PMID:34576050   PMID:35296205   PMID:35913387   PMID:37958812   PMID:37976702  



Aif1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,651,435 - 3,657,341 (+)NCBIGRCr8
mRatBN7.2203,646,784 - 3,652,670 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,646,777 - 3,652,668 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,350,088 - 4,351,997 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,712,144 - 3,714,054 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,249,928 - 4,251,828 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,161,350 - 5,167,176 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,161,333 - 5,166,448 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,234,609 - 7,240,454 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,714,428 - 3,716,327 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1203,714,654 - 3,716,552NCBI
Celera204,373,127 - 4,375,026 (-)NCBICelera
Cytogenetic Map20p12NCBI
AIF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,615,234 - 31,617,015 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,615,217 - 31,617,021 (+)EnsemblGRCh38hg38GRCh38
GRCh37631,583,011 - 31,584,792 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,691,012 - 31,692,777 (+)NCBINCBI36Build 36hg18NCBI36
Build 34631,691,767 - 31,692,777NCBI
Celera633,181,222 - 33,183,026 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,369,335 - 31,370,975 (+)NCBIHuRef
CHM1_1631,585,130 - 31,586,934 (+)NCBICHM1_1
T2T-CHM13v2.0631,468,284 - 31,470,065 (+)NCBIT2T-CHM13v2.0
Aif1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,389,967 - 35,394,977 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,389,967 - 35,395,044 (-)EnsemblGRCm39 Ensembl
GRCm381735,170,986 - 35,176,083 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,170,991 - 35,176,068 (-)EnsemblGRCm38mm10GRCm38
MGSCv371735,307,937 - 35,312,946 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361734,779,048 - 34,784,057 (-)NCBIMGSCv36mm8
Celera1738,267,928 - 38,272,936 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.59NCBI
Aif1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437157,509 - 158,919 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955437157,509 - 158,919 (+)NCBIChiLan1.0ChiLan1.0
AIF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,092,079 - 46,093,913 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,053,651 - 42,055,477 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,276,215 - 31,278,051 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,166,301 - 32,168,125 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,166,301 - 32,168,125 (+)Ensemblpanpan1.1panPan2
AIF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,104,350 - 1,106,179 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,104,394 - 1,106,177 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,240,799 - 1,242,629 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,249,600 - 1,251,430 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,249,645 - 1,251,403 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,108,905 - 1,110,735 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,176,225 - 1,178,056 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,243,086 - 1,244,917 (+)NCBIUU_Cfam_GSD_1.0
Aif1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,651,964 - 35,653,851 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,907,505 - 1,909,338 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,907,493 - 1,909,350 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AIF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,728,726 - 23,731,675 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,711,752 - 23,731,191 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,520,797 - 27,540,237 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AIF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366604431,525,412 - 31,527,245 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aif1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,590,071 - 24,591,904 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,590,071 - 24,591,913 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Aif1
85 total Variants

Predicted Target Of
Summary Value
Count of predictions:115
Count of miRNA genes:82
Interacting mature miRNAs:88
Transcripts:ENSRNOT00000001135, ENSRNOT00000001138
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2026463954597031Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126123605Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2026463954597031Rat

1 to 10 of 24 rows
RH135373  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8203,656,581 - 3,657,308 (+)Marker Load Pipeline
mRatBN7.2203,651,910 - 3,652,637 (-)MAPPERmRatBN7.2
Rnor_6.0205,161,383 - 5,162,109NCBIRnor6.0
Rnor_5.0207,234,642 - 7,235,368UniSTSRnor5.0
RGSC_v3.4203,715,568 - 3,716,294UniSTSRGSC3.4
Celera204,373,160 - 4,373,886UniSTS
RH 3.4 Map2053.6UniSTS
Cytogenetic Map20p12UniSTS
MARC_5857-5858:997299374:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,651,240 - 3,651,828 (-)MAPPERmRatBN7.2
Rnor_6.0205,162,192 - 5,162,779NCBIRnor6.0
Rnor_5.0207,235,451 - 7,236,038UniSTSRnor5.0
RGSC_v3.4203,714,898 - 3,715,485UniSTSRGSC3.4
Celera204,373,969 - 4,374,556UniSTS
Cytogenetic Map20p12UniSTS
Aif1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8203,655,730 - 3,656,489 (+)Marker Load Pipeline
mRatBN7.2203,651,059 - 3,651,818 (-)MAPPERmRatBN7.2
Rnor_6.0205,162,202 - 5,162,960NCBIRnor6.0
Rnor_5.0207,235,461 - 7,236,219UniSTSRnor5.0
RGSC_v3.4203,714,717 - 3,715,475UniSTSRGSC3.4
Celera204,373,979 - 4,374,737UniSTS
Cytogenetic Map20p12UniSTS


This gene Aif1 is modified in the following models/strains:




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 17 of 17 rows
RefSeq Transcripts NM_017196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB000818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC094348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF299328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX883046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D82069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM053942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U10894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U17919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U33471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 17 of 17 rows

Ensembl Acc Id: ENSRNOT00000001135   ⟹   ENSRNOP00000001135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,650,771 - 3,652,668 (+)Ensembl
Rnor_6.0 Ensembl205,161,356 - 5,163,247 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000001138   ⟹   ENSRNOP00000001138
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,649,975 - 3,652,668 (+)Ensembl
Rnor_6.0 Ensembl205,161,333 - 5,166,252 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076331   ⟹   ENSRNOP00000068279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,647,572 - 3,652,668 (+)Ensembl
Rnor_6.0 Ensembl205,161,350 - 5,166,448 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076979
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,650,360 - 3,652,668 (+)Ensembl
Rnor_6.0 Ensembl205,161,350 - 5,163,660 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097547   ⟹   ENSRNOP00000085491
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,646,777 - 3,652,668 (+)Ensembl
RefSeq Acc Id: NM_017196   ⟹   NP_058892
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,655,442 - 3,657,341 (+)NCBI
mRatBN7.2203,650,771 - 3,652,670 (+)NCBI
Rnor_6.0205,161,350 - 5,163,249 (-)NCBI
Rnor_5.0207,234,609 - 7,240,454 (-)NCBI
RGSC_v3.4203,714,428 - 3,716,327 (+)RGD
Celera204,373,127 - 4,375,026 (-)RGD
Sequence:
RefSeq Acc Id: XM_006256065   ⟹   XP_006256127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,652,201 - 3,657,341 (+)NCBI
mRatBN7.2203,647,577 - 3,652,670 (+)NCBI
Rnor_6.0205,161,350 - 5,166,443 (-)NCBI
Rnor_5.0207,234,609 - 7,240,454 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039098495   ⟹   XP_038954423
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,652,422 - 3,657,341 (+)NCBI
mRatBN7.2203,647,751 - 3,652,670 (+)NCBI
RefSeq Acc Id: XM_063279015   ⟹   XP_063135085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,651,435 - 3,657,341 (+)NCBI
RefSeq Acc Id: NP_058892   ⟸   NM_017196
- UniProtKB: P55007 (UniProtKB/Swiss-Prot),   P70491 (UniProtKB/Swiss-Prot),   P55009 (UniProtKB/Swiss-Prot),   A6KTW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256127   ⟸   XM_006256065
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JT08 (UniProtKB/TrEMBL),   A6KTW0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068279   ⟸   ENSRNOT00000076331
Ensembl Acc Id: ENSRNOP00000001135   ⟸   ENSRNOT00000001135
Ensembl Acc Id: ENSRNOP00000001138   ⟸   ENSRNOT00000001138
Name Modeler Protein Id AA Range Protein Structure
AF-P55009-F1-model_v2 AlphaFold P55009 1-147 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13701399
Promoter ID:EPDNEW_R11923
Type:initiation region
Name:Aif1_1
Description:allograft inflammatory factor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11924  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,163,247 - 5,163,307EPDNEW
RGD ID:13701401
Promoter ID:EPDNEW_R11924
Type:initiation region
Name:Aif1_2
Description:allograft inflammatory factor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11923  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,166,223 - 5,166,283EPDNEW


1 to 30 of 30 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-4656 BioCyc
Ensembl Genes ENSRNOG00000000853 Ensembl
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot
InterPro AIF-1_EF_pair UniProtKB/Swiss-Prot
  AIF1/AIF1L UniProtKB/Swiss-Prot
  EF-hand-dom_pair UniProtKB/Swiss-Prot
  EF_hand_dom UniProtKB/Swiss-Prot
KEGG Report rno:29427 UniProtKB/Swiss-Prot
NCBI Gene 29427 ENTREZGENE
PANTHER ALLOGRAFT INFLAMMATORY FACTOR 1 UniProtKB/Swiss-Prot
  PTHR10356 UniProtKB/Swiss-Prot
Pfam AIF-1 UniProtKB/Swiss-Prot
PhenoGen Aif1 PhenoGen
PROSITE EF_HAND_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000853 RatGTEx
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot
UniProt A0A0G2JT08 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A0A1_RAT UniProtKB/TrEMBL
  A0A8I6GLW1_RAT UniProtKB/TrEMBL
  A0A8L2PZR6_RAT UniProtKB/TrEMBL
  A6KTW0 ENTREZGENE, UniProtKB/TrEMBL
  A6KTW2 ENTREZGENE, UniProtKB/TrEMBL
  A6KTW3_RAT UniProtKB/TrEMBL
  AIF1_RAT UniProtKB/Swiss-Prot
  F1LRC2_RAT UniProtKB/TrEMBL
  P55007 ENTREZGENE
  P55009 ENTREZGENE
  P70491 ENTREZGENE
UniProt Secondary P55007 UniProtKB/Swiss-Prot
  P70491 UniProtKB/Swiss-Prot
1 to 30 of 30 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-06 Aif1  allograft inflammatory factor 1   Bart1  balloon angioplasty responsive transcript  Data merged from RGD:621212 737654 APPROVED
2002-08-07 Bart1  balloon angioplasty responsive transcript      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Aif1  allograft inflammatory factor 1       Name updated 70584 APPROVED

Note Type Note Reference
gene_domains contains two strongly hydrophilic and one hydrophobic region, suggesting a type II integral membrane protein 632014
gene_mapping found within the rat major histocompatibility RT1 complex 1300431
gene_process may play a role in macrophage activation and function 724707
gene_regulation transiently expressed in response to vascular trauma 632014
gene_regulation transiently expressed in response to vascular trauma 632015