Pia40 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Pia40 (Pristane induced arthritis QTL 40) Rattus norvegicus

Symbol: Pia40
Name: Pristane induced arthritis QTL 40
RGD ID: 2306850
Previously known as: Pia1
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: Not Available
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2201,527,959 - 5,304,575RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0202,018,770 - 6,567,419RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0204,059,395 - 8,810,219RGDRnor5.0
RGSC_v3.4201,616,449 - 5,447,380RGDRGSC3.4
Cross Type: intercross
Strains Crossed: E3.DA-(D20Rat45-D20Rat47)/Rhd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition
pristane  (IDA)

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Detection of arthritis-susceptibility loci, including Ncf1, and variable effects of the major histocompatibility complex region depending on genetic background in rats. Rintisch C, etal., Arthritis Rheum. 2009 Feb;60(2):419-27.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2209Wdr46WD repeat domain 462049378454945796Rat
619978Csnk2bcasein kinase 2 beta2037003633705331Rat
3618Vps52VPS52 subunit of GARP complex2049207154931685Rat
2204Cfbcomplement factor B2039706433976510Rat
2840Hspa1bheat shock protein family A (Hsp70) member 1B2038551043859148Rat
3950Vars1valyl-tRNA synthetase 12038057743820468Rat
3020Ltalymphotoxin alpha2036188533621324Rat
3469RT1-BbRT1 class II, locus Bb2045965584602201Rat
3501RT1-O1RT1 class Ib, locus O12026551162657520Rat
2934Itpr3inositol 1,4,5-trisphosphate receptor, type 32051369685202339Rat
2373Col11a2collagen type XI alpha 2 chain2047869324816598Rat
3887Tnxa-ps1tenascin XA, pseudogene 12040264714027826Rat
70991Flot1flotillin 12029178642927993Rat
2231C2complement C22039514743970376Rat
3595Rps18ribosomal protein S182049314274935538Rat
3611Rxrbretinoid X receptor beta2048168134823267Rat
3817Tap1transporter 1, ATP binding cassette subfamily B member2046562624666634Rat
620286Abcf1ATP binding cassette subfamily F member 12028025192815433Rat
621227Daxxdeath-domain associated protein2049700904976145Rat
727839LOC360231MHC class I RT1.O type 149 processed pseudogene2026845592743176Rat
3819TapbpTAP binding protein2049569374966191Rat
620079Ppp1r10protein phosphatase 1, regulatory subunit 102028229952838125Rat
61924Aif1allograft inflammatory factor 12036467843652670Rat
621090Syngap1synaptic Ras GTPase activating protein 12050263665056659Rat
3427Psmb9proteasome 20S subunit beta 92046670444672512Rat
628854Rnf39ring finger protein 392016047941610283Rat
3163Neu1neuraminidase 12038974803901745Rat
620731Btnl2butyrophilin-like 22044901694504002Rat
1303186Atp6v1g2ATPase H+ transporting V1 subunit G22035876813591309Rat
1303205Phf1PHD finger protein 12050177655022872Rat
1303227FkbplFKBP prolyl isomerase like2040998454101315Rat
1303158Hsd17b8hydroxysteroid (17-beta) dehydrogenase 82048267254828742Rat
1303262Btnl3butyrophilin-like 32044740564489024Rat
1303269Mpig6bmegakaryocyte and platelet inhibitory receptor G6b2037573963761024Rat
1303270Prr3proline rich 32027928682799865Rat
620773Apomapolipoprotein M2036909503693550Rat
3876Tnftumor necrosis factor2036220113624629Rat
620375Ppt2palmitoyl-protein thioesterase 22041125204132774Rat
735037RT1-S3RT1 class Ib, locus S32026706542675411Rat
3818Tap2transporter 2, ATP binding cassette subfamily B member2046363474650387Rat
2461Cyp21a1cytochrome P450, family 21, subfamily a, polypeptide 12040202174026923Rat
1303180Sfta2surfactant associated 22030935693094299Rat
69258Ageradvanced glycosylation end product-specific receptor2041481504151361Rat
1303043Clic1chloride intracellular channel 12037648673773711Rat
1303050Zbtb9zinc finger and BTB domain containing 92050574335060459Rat
1303059Skic2SKI2 subunit of superkiller complex2039824943993261Rat
1303090Rpp21ribonuclease P/MRP subunit p212020181702020100Rat
620328B3galt4Beta-1,3-galactosyltransferase 42049360894937664Rat
1302958Zbtb12zinc finger and BTB domain containing 122039376683940514Rat
1302981Zfp57zinc finger protein 572015213231534884Rat
1302953CB741658CB741658 gene2031190503122302Rat
735180Ly6g5clymphocyte antigen 6 family member G5C2037094263713940Rat
1302998Mrps18bmitochondrial ribosomal protein S18B2028381742844260Rat
1302999Ly6g6clymphocyte antigen 6 family member G6C2037536323757205Rat
1303006Pfdn6prefoldin subunit 62049459594947433Rat
1303008Msh5mutS homolog 52037738673793337Rat
3426Psmb8proteasome 20S subunit beta 82046521594655122Rat
1303306CutacutA divalent cation tolerance homolog2050229565024580Rat
1303333Ly6g6flymphocyte antigen 6 family member G6F2037374593742327Rat
2252Ddr1discoidin domain receptor tyrosine kinase 12030424943064442Rat
628596Tubb5tubulin, beta 5 class I2029127792916928Rat
1303332Cyp21a1-pscytochrome P450, family 21, subfamily a, polypeptide 1, pseudogene2042156374231737Rat
1303309Gtf2h4general transcription factor 2H subunit 42030713283076990Rat
1303317Atf6bactivating transcription factor 6 beta2040909214098920Rat
1303321Ier3immediate early response 32029283782929582Rat
1303325Nelfenegative elongation factor complex member E2039765123982389Rat
735096RT1-DMbRT1 class II, locus DMb2046931024700340Rat
3576Ring1ring finger protein 12048301204833623Rat
3477RT1-DOaRT1 class II, locus DOa2047535874756590Rat
620077Lst1leukocyte specific transcript 12036346803639731Rat
620005C4acomplement C4A2040057314020083Rat
1306917Uqcc2ubiquinol-cytochrome c reductase complex assembly factor 22052028375214541Rat
1303092RT1-T18RT1 class Ib, locus T182026052612608909Rat
1303101Ly6g5blymphocyte antigen 6 family member G5B2037054643707830Rat
1302985Ralgdsl2ral guanine nucleotide dissociation stimulator like 22049484954956774Rat
1302996C20h6orf136similar to human chromosome 6 open reading frame 1362028578402861952Rat
1303124Btnl7butyrophilin-like 72043010784313522Rat
1303125Mucl3mucin like 32031006523108569Rat
735053RT1-DMaRT1 class II, locus DMa2047070284710432Rat
1305341Lemd2LEM domain nuclear envelope protein 22052823975296621Rat
1303167Slc44a4solute carrier family 44, member 42039030993919215Rat
1303112Ly6g6elymphocyte antigen 6 family member G6E2037449993749867Rat
1303115Trim39tripartite motif-containing 392020033202017175Rat
1303122Vars2valyl-tRNA synthetase 2, mitochondrial2030771323087994Rat
1303282Notch4notch receptor 42041603624184466Rat
1309543Ppp1r18protein phosphatase 1, regulatory subunit 182028775672887526Rat
1359375RT1-M1-4RT1 class I, locus M1, gene 42018913651893585Rat
1359196RT1-CE13RT1 class I, locus CE132033148303318106Rat
1359403RT1-CE16RT1 class I, locus CE162032571093260747Rat
1359483RT1-CE11RT1 class I, locus CE112033553933358520Rat
1359348Prrt1proline-rich transmembrane protein 12041179574121643Rat
1303199E230034O05RikE230034O05Rik gene2036563063658463Rat
621635Bak1BCL2-antagonist/killer 12051004805109669Rat
71064Bag6BAG cochaperone 62036759383690414Rat
70923Ddx39bDExD-box helicase 39B2035477023585064Rat
1303066Atat1alpha tubulin acetyltransferase 12028445952857809Rat
1302992Cchcr1coiled-coil alpha-helical rod protein 12032056753218437Rat
1359359Sapcd1suppressor APC domain containing 12037939803795767Rat
1302972Ehmt2euchromatic histone lysine methyltransferase 22039196233936751Rat
1303038G4G4 protein2036936913696194Rat
1302974Tcf19transcription factor 192032187563222861Rat
1308607Trim31tripartite motif-containing 312016531651666494Rat
727881Ncr3natural cytotoxicity triggering receptor 32036372423643748Rat
1303164Abhd16aabhydrolase domain containing 16A, phospholipase2037190893733952Rat
1303267Dxodecapping exoribonuclease2039933223995484Rat
1303072AA926063AA926063gene2049764624988984Rat
1303017RT1-CE6RT1 class I, locus CE62034609793461929Rat
1302963Dhx16DEAH-box helicase 162028620002874991Rat
1359627Zbtb22zinc finger and BTB domain containing 222049663314969853Rat
1359630RT1-CE15RT1 class I, locus CE152032755753279074Rat
1359635RT1-M10-1RT1 class I, locus M10, gene 12019868171988908Rat
1359729Ggnbp1gametogenetin binding protein 12051098495116185Rat
1303212Arrb2-psarrestin, beta 2, pseudogene2045238974524874Rat
1562652H2-Q7-ps1histocompatibility 2, Q region locus 7 like, pseudogene 12026328982635694Rat
1303162Ltblymphotoxin beta2036275363629381Rat
1303163Ppp1r11protein phosphatase 1, regulatory (inhibitor) subunit 112016013501604857Rat
1359645Trim40tripartite motif-containing 402016761141685906Rat
1359499RT1-T24-1RT1 class I, locus T24, gene 12027614952774871Rat
1303310Nfkbil1NFKB inhibitor like 12035899743608348Rat
1303114Polr1hRNA polymerase I subunit H2015949361598854Rat
1559468Mdc1mediator of DNA damage checkpoint 12028936932912394Rat
1359292RT1-CE10RT1 class I, locus CE102033772843380301Rat
1303137Vwa7von Willebrand factor A domain containing 72037949913805646Rat
1359103RT1-CE12RT1 class I, locus CE122033389073342547Rat
1359342RT1-CE14RT1 class I, locus CE142032966543300795Rat
1303084Pbx2PBX homeobox 22041515004156425Rat
1303025Prrc2aproline-rich coiled-coil 2A2036583913674143Rat
1549706Egfl8EGF-like-domain, multiple 82041329304136024Rat
1359118Kifc1kinesin family member C12049988325017107Rat
1359126Trim26tripartite motif-containing 262017082971731176Rat
1302955Ddah2DDAH family member 2, ADMA-independent2037614603764718Rat
1359610RT1-A3RT1 class I, locus A32048475184851344Rat
1303051Gnl1G protein nucleolar 12027831302792115Rat
1303064Ly6g6dlymphocyte antigen 6 family member G6D2037419733752378Rat
1303324Brd2bromodomain containing 22047270784735389Rat
1302966Nrmnurim2028883212892804Rat
1303010Btnl8butyrophilin-like 82042648404280876Rat
1303033RT1-T24-2RT1 class I, locus T24, gene 22027344152738899Rat
1303304Gpank1G patch domain and ankyrin repeats 12036976413700814Rat
1303014Gpsm3G-protein signaling modulator 32041571234158984Rat
1359434RT1-M1-2RT1 class I, locus M1, gene 22019095061913423Rat
1584104Ip6k3inositol hexakisphosphate kinase 32052238635245443Rat
1359491Pou5f1POU class 5 homeobox 12032231283227891Rat
1564067Znrd1as1ZNRD1 antisense RNA 12015681051595084Rat
1359601Stk19serine/threonine kinase 192039955904005117Rat
1562593RT1-M4RT1 class Ib, locus M42015520721555823Rat
1359438Trim10tripartite motif-containing 102016895541698948Rat
1562885C20h6orf15similar to human chromosome 6 open reading frame 152031723303173886Rat
1585554Abhd17c-ps1abhydrolase domain containing 17C, depalmitoylase, pseudogene 12025824632585077Rat
1591981Psors1c2psoriasis susceptibility 1 candidate 22032021783203599Rat
1590214Rpl13-ps1ribosomal protein L13, pseudogene 12038394603839702Rat
1587041RT1-M1-5RT1 class I, M1, gene 52018586081860708Rat
1588458Rnf5ring finger protein 52041455394147985Rat
1588459Stk19-psserine/threonine kinase 19 pseudogene2041941714196677Rat
1588460Btnl6-ps1butyrophilin-like 6, pseudogene 12043369024344877Rat
1595720Nerg-ps2EST221625 related pseudogene 22025774172577734Rat
1595722Rcrg1-ps3Riken clone 5830469G19 related pseudogene 32025798662579961Rat
1595723Rcrg1-ps2Riken clone 5830469G19 related pseudogene 22025801702580501Rat
1595724Rcrg2-ps1Riken clone 2210412D01 related pseudogene 12025829212585072Rat
1595725Rcrg1-ps1Riken clone 5830469G19 related pseudogene 12025870702587419Rat
15957262464a1class I gene fragment 24642025909612591175Rat
15957272463a1a2class I gene fragment 24632025919492592650Rat
15957282461a1a2class I gene fragment 24612025941642594837Rat
15957292458a2class I gene fragment 24582025977522597967Rat
1595730RT1-V1-ps1RT1 class I, locus V1, pseudogene 12026132662616884Rat
15957622886a1-a1a2class I gene fragment 28862023988522399634Rat
15957632879a1class I gene fragment 28792021998202200088Rat
1595764Nerg-ps12EST221625 related pseudogene 122023528062353324Rat
1595765Rcrg1-ps31Riken clone 5830469G19 related pseudogene 312022071312207439Rat
15957662869a1a2class I gene fragment 28692022187082219184Rat
1595767Rcrg1-ps30Riken clone 5830469G19 related pseudogene 302022192132219504Rat
15957682865a2class I gene fragment 28652022221552222352Rat
1595769Rcrg1-ps29Riken clone 5830469G19 related pseudogene 292022226612222951Rat
15957702860a1class I gene fragment 28602022271442227380Rat
15957712846a1a2class I gene fragment 28462022404472241229Rat
1595772Nerg-ps11EST221625 related pseudogene 112022516962252212Rat
1595773Rcrg1-ps28Riken clone 5830469G19 related pseudogene 282022550252255255Rat
15957742829a1a2class I gene fragment 28292022579702258447Rat
1595775Rcrg1-ps27Riken clone 5830469G19 related pseudogene 272022584762258767Rat
15957762824a1class I gene fragment 28242021723342172570Rat
15957772812a1a2class I gene fragment 28122022752252276024Rat
1595778Rcrg1-ps26Riken clone 5830469G19 related pseudogene 262022844932284801Rat
15957792800a1a2class I gene fragment 28002022874392287916Rat
1595780Rcrg1-ps25Riken clone 5830469G19 related pseudogene 252022879452288236Rat
15957812795a1class I gene fragment 27952022924902292729Rat
15957822788a1a2class I gene fragment 2788a1a22022983962299178Rat
1595786RT1-CE7RT1 class I, locus CE72034342053437152Rat
1595816RT1-M5RT1 class Ib, locus M52015464961548948Rat
1594403Cdk2ap1-ps8Cdk2ap1-ps8 pseudogene2032679053268051Rat
15944412673a1a2class I gene fragment 26732024161452416621Rat
1597066Rpl39-ps1ribosomal protein 39 pseudogene 12016880771688661Rat
1597067Pbp-psPbp pseudogene2016889191689377Rat
1597068Trim15-ps1tripartite motif-containing 15, pseudogene 12017014311704183Rat
1597069RT1-M10-4-psRT1 class I, locus M10, gene 4, pseudogene2017699091772038Rat
15970703298a3RT1 class I, pseudogene 3298a32017802761780538Rat
1597071RT1-M10-3-psRT1 class I, locus M10, gene 3, pseudogene2017914201793027Rat
15970723281a3RT1 class I, pseudogene 3281a32017976531797898Rat
15970733258a2RT1 class I, pseudogene 3258a22018210071821191Rat
15970743252a3RT1 class I pseudogene 3252a32018267651826955Rat
1597075RT1-M8-psRT1 class I, locus M8, pseudogene2018284871829703Rat
1597076RT1-M7-psRT1 class I, locus M7, pseudogene2018301191832303Rat
1597077RT1-M1-3-psRT1 class I, locus M1, gene 3, pseudogene2018937761895367Rat
1597078Ppid-ps1peptidylprolyl isomerase D, pseudogene 12019459011946181Rat
1597079RT1-M1-1-psRT1 class I, locus M1, gene 1, pseudogene2019374431940047Rat
1597081RT1-M10-2-psRT1 class I, locus M10, gene 2, pseudogene2019627271964874Rat
15970823082ex4-5RT1 class pseudogene 3082ex4-52019963271996756Rat
1597084Rps15-ps1ribosomal protein S15, pseudogene 12015645011564989Rat
1594404LOC224733l-9LOC224733l-9 pseudogene2032824953282800Rat
1594405Cdk2ap1-ps7Cdk2ap1-ps7 pseudogene2032896063289752Rat
1594406Cdk2ap1-ps6Cdk2ap1-ps6 pseudogene2033261663327363Rat
1594407Sacm2l-ps7Sacm2l-ps7 pseudogene2033307463331375Rat
1594408Sacm2l-ps6Sacm2l-ps6 pseudogene2033314613331539Rat
1594409Sacm2l-ps5Sacm2l-ps5 pseudogene2033317283332881Rat
1594410LOC224733l-8LOC224733l-8 pseudogene2033619303362233Rat
1594411Cdk2ap1-ps5Cdk2ap1-ps5 pseudogene2033690473369193Rat
1594412LOC224733l-7LOC224733l-7 pseudogene2033831633383468Rat
1594413RT1-CE9-ps1RT1 class I, locus CE9, pseudogene 12034036553406844Rat
1594414RT1-CE8-ps1RT1 class I, locus CE8, pseudogene 12034182653421623Rat
1594415LOC224733l-6LOC224733l-6 pseudogene2034236423423957Rat
1594416Cdk2ap1-ps4Cdk2ap1-ps4 pseudogene2034289273430126Rat
1594417LOC224733l-5LOC224733l-5 pseudogene2034397233440020Rat
1594418Sacm2l-ps4Sacm2l-ps4 pseudogene2034680353469175Rat
1594419LOC224733l-4LOC224733l-4 pseudogene2034828943483196Rat
1594420Cdk2ap1-ps3Cdk2ap1-ps3 pseudogene2034930953493240Rat
1594421LOC224733l-3LOC224733l-3 pseudogene2035079743508279Rat
1594422Cdk2ap1-ps2Cdk2ap1-ps2 pseudogene2035335093534644Rat
1594423Sacm2l-ps3Sacm2l-ps3 pseudogene2035484813548940Rat
1594424Rps25-ps2ribosomal protein S25, pseudogene 22037353473735801Rat
15944252361ex4-5class I gene fragment 23612026939752694324Rat
1594426Rpl41-ps1ribosomal protein L41, pseudogene 12027044562704840Rat
15944272331ex4-5class I gene fragment 23312027242342724758Rat
15944282310ex4-5class I gene fragment 23102027453912745740Rat
1594430Rpl22-ps1ribosomal protein L22, pseudogene 12031901483190745Rat
15944312722a1a2class I gene fragment 27222023412322342016Rat
15944322715a1class I gene fragment 27152023487462349014Rat
1594433Nerg-ps9EST221625 related pseudogene 92022037872204305Rat
1594434Rcrg1-ps19Riken clone 5830469G19 related pseudogene 192023561362356444Rat
15944352705a1class I gene fragment 27052023590822359279Rat
15944362702a1class I gene fragment 27022023612522361491Rat
15944372690a1-a1a2class I gene fragment 26902021923542193135Rat
15944382683a1class I gene fragment 26832024063242406592Rat
1594439Nerg-ps8EST221625 related pseudogene 82024098712410388Rat
1594440Rcrg1-ps18Riken clone 5830469G19 related pseudogene 182024131962413504Rat
1595920RT1-S2RT1 class Ib, locus S22026502332651654Rat
1595921RT1-HaRT1 class II, locus Ha2047606314770662Rat
1595922RT1-Db2RT1 class II, locus Db22045207234539724Rat
1595923RT1-A2RT1 class Ia, locus A22048709394910183Rat
1595924RT1-A1RT1 class Ia, locus A12049053094914593Rat
1595925Hspa1lheat shock protein family A (Hsp70) member 1 like2038488433855571Rat
1593284Hspa1aheat shock protein family A (Hsp70) member 1A2038707653873221Rat
1598543Cdsncorneodesmosin2031794323184252Rat
1594464Rcrg1-ps10Riken clone 5830469G19 related pseudogene 102025296092529917Rat
1594465Nerg-ps6EST221625 related pseudogene 62025308862531404Rat
1594466Nerg-ps5EST221625 related pseudogene 52025477202548326Rat
1594467Rcrg1-ps9Riken clone 5830469G19 related pseudogene 92025507642550859Rat
1594468Rcrg1-ps8Riken clone 5830469G19 related pseudogene 82025528552553162Rat
15944692509a1class I gene fragment 25092025562282556436Rat
1594470Rcrg1-ps7Riken clone 5830469G19 related pseudogene 72025576622557813Rat
1594471Rcrg2-ps6Riken clone 2210412D01 related pseudogene 62025597562560041Rat
1594472Rcrg1-ps6Riken clone 5830469G19 related pseudogene 62025602442560657Rat
1594473Rcrg2-ps5Riken clone 2210412D01 related pseudogene 52025627012564984Rat
1594477Nerg-ps3EST221625 related pseudogene 32025657442566336Rat
1594479Rcrg1-ps4Riken clone 5830469G19 related pseudogene 42025683912570631Rat
1595732RT1-O3-psRT1 class I, locus O3, pseudogene2026244652626661Rat
1595733Rps2-ps2ribosomal protein S2, pseudogene 22026201172620845Rat
1595734RT1-O2-psRT1 class I, locus O2, pseudogene2026301102635431Rat
1595735Rps2-ps1ribosomal protein S2, pseudogene 12026539582654686Rat
1595736RT1-P2-ps1RT1 class I, locus P2, pseudogene 12020435662046079Rat
1595737Rcrg1-ps40Riken clone 5830469G19 related pseudogene 402020590012059309Rat
1595738Nerg-ps15EST221625 related pseudogene 152020602782060796Rat
15957392994a1class I gene fragment 29942020846342084890Rat
1595740Nerg-ps14EST221625 related pseudogene 142021311292131647Rat
1595741Rcrg1-ps39Riken clone 5830469G19 related pseudogene 392021344712134778Rat
15957422984a1a2class I gene fragment 29842021374192137896Rat
1595743Rcrg1-ps38Riken clone 5830469G19 related pseudogene 382021379252138215Rat
15957442981a1a2class I gene fragment 29812021408552141332Rat
1594398Sacm2l-ps2Sacm2l-ps2 pseudogene2048602074861343Rat
1594399Sacm2l-ps1Sacm2l-ps1 pseudogene2048614394861499Rat
1594400LOC224733l-2LOC224733l-2 pseudogene2048669864867269Rat
1594401LOC224733l-1LOC224733l-1 pseudogene2048937044901482Rat
15970532764a12764a1 pseudogene2023229262323123Rat
1597054Rcrg1-ps22Riken clone 5830469G19 related pseudogene 222023234322323722Rat
15970552759a12759a1 pseudogene2021066672106903Rat
15970562747a1a22747a1a2 pseudogene2021685922169375Rat
1597058Rcrg1-ps21Riken clone 5830469G19 related pseudogene 212023832692383559Rat
1597060Rcrg1-ps20Riken clone 5830469G19 related pseudogene 202023868072387126Rat
1597063Tsbp1testis expressed basic protein 12044100024467284Rat
1597065Ppp1cb-ps1protein phosphatase 1, catalytic subunit, beta isoform, pseudogene 12016776631678586Rat
1593280Slc39a7solute carrier family 39 member 72048231664826538Rat
1593282RT1-Db1RT1 class II, locus Db12045486644558237Rat
1593283RT1-DaRT1 class II, locus Da2045134644518457Rat
1591983C4bcomplement C4B2041973714211684Rat
15970482781a1class I gene fragment 27812023058812306148Rat
1597049Nerg-ps10EST221625 related pseudogene 102023092612309779Rat
1597050Rcrg1-ps24Riken clone 5830469G19 related pseudogene 242020913302091638Rat
15970512768a1a22768a1a2 pseudogene2023194802319957Rat
1597052Rcrg1-ps23Riken clone 5830469G19 related pseudogene 232023199862320276Rat
1591984Cdk2ap1-ps1Cdk2ap1-pseudogene 12048778724878222Rat
1591985Sec61-psSec61 pseudogene2049909544991292Rat
1591986Rps25-ps1ribosomal protein S25, pseudogene 12049971124997779Rat
1595850RT1-N2RT1 class Ib, locus N22026411572645439Rat
1598230Trim39-psTrim39 pseudogene2019017281901822Rat
1598231RT1-CE3RT1 class I, locus CE32035166473520938Rat
1598232RT1-M6-1RT1 class I, locus M6, gene 12015662201569151Rat
1598233RT1-T24-4RT1 class I, locus T24, gene 42026845152747878Rat
1598234RT1-CE4RT1 class I, locus CE42034315093504535Rat
1598235RT1-CE2RT1 class I, locus CE22035384523541841Rat
1303287Agpat11-acylglycerol-3-phosphate O-acyltransferase 12041359554144880Rat
1598370RT1-N3RT1 class Ib, locus N32026591322665536Rat
1594462Rcrg1-ps11Riken clone 5830469G19 related pseudogene 112025257162526042Rat
1595745Rcrg1-ps37Riken clone 5830469G19 related pseudogene 372021413612141652Rat
15957472959a1class I gene fragment 29592021627002162936Rat
15957492950a1class I gene fragment 29502021723322172568Rat
1595750Rcrg1-ps36Riken clone 5830469G19 related pseudogene 362021021762102466Rat
15957512945a1a2class I gene fragment 29452021016702102147Rat
15957532941a1a2class I gene fragment 29412020982202099016Rat
1595754Rcrg1-ps34Riken clone 5830469G19 related pseudogene 342020912172091640Rat
1595755Nerg-ps13EST221625 related pseudogene 132021311312131649Rat
15957562927a1class I gene fragment 29272021277762128044Rat
15957572920a1a2class I gene fragment 29202021199882120776Rat
15957582906a1class I gene fragment 29062021066692106905Rat
1595759Rcrg1-ps33Riken clone 5830469G19 related pseudogene 332021767702177060Rat
15957602901a1a2class I gene fragment 29012021770882177566Rat
1595761Rcrg1-ps32Riken clone 5830469G19 related pseudogene 322021802042180627Rat
1595814RT1-DObRT1 class II, locus DOb2046194184625627Rat
1595815RT1-M6-2RT1 class I, locus M6, gene 22015832671587099Rat
1598536Lsm2LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated2038434673847217Rat
1598537Btnl5butyrophilin-like 52043667804376385Rat
1598538Btn3a2butyrophilin, subfamily 3, member A22043982544405681Rat
1595866RT1-Hb-ps1RT1 class II, locus Hb, pseudogene 12047755984779590Rat
1595867RT1-BaRT1 class II, locus Ba2045751344579727Rat
1595868RT1-CE5RT1 class I, locus CE52034034183479476Rat
1595869RT1-CE1RT1 class I, locus12035557793559487Rat
1594442Rcrg1-ps17Riken clone 5830469G19 related pseudogene 172024166502416940Rat
15944432669a1class I gene fragment 26692024195872419784Rat
1594444Rcrg1-ps16Riken clone 5830469G19 related pseudogene 162024200932420383Rat
15944462661a1a2class I gene fragment 26612021690302169377Rat
1594447Rcrg1-ps15Riken clone 5830469G19 related pseudogene 152023868092387128Rat
15944482646a1a2class I gene fragment 26462023835882384066Rat
1594449Rcrg1-ps14Riken clone 5830469G19 related pseudogene 142023832702383560Rat
15944502641a1class I gene fragment 26412023788422379078Rat
15944512619a1_ps2class I gene fragment 2619, pseudogene 22024386872439471Rat
15944522619a1-ps1class I gene fragment 2619, pseudogene 12024462512446518Rat
1594453Nerg-ps7EST221625 related pseudogene 72024496512450167Rat
1594454Rcrg1-ps13Riken clone 5830469G19 related pseudogene 132024529762453284Rat
15944552609a1a2class I gene fragment 26092024559282456396Rat
1594456Rcrg1-ps12Riken clone 5830469G19 related pseudogene 122024564252456708Rat
15944572600a1a2class I gene fragment 26002024652482465878Rat
1594458Rps2-ps4ribosomal protein S2, pseudogene 42024915102492420Rat
1594459RT1-V2-ps1RT1 class I, locus V2, pseudogene 12024955672499393Rat
1594460RT1-P1-ps1RT1 class I, locus P1, pseudogene 12025033232505787Rat
15944612543a1class I gene fragment 25432025225342522770Rat
1624210Btnl4butyrophilin-like 42042313504244825Rat
1624211RT1-T24-3RT1 class I, locus T24, gene 32027182102730604Rat
1642907Mlnmotilin2053042495308948Rat
2313830Cb707485hypothetical LOC1003107832030213903024364Rat
2323486Srsf6-ps1serine and arginine rich splicing factor 6, pseudogene 12025949862596778Rat
2324335Mt1mmetallothionein 1M2031590373159409Rat
2325510Mir877microRNA 8772028114762811560Rat
2325545Mir219a1microRNA 219a-12048296874829796Rat
6496746Trim15tripartite motif containing 152017009051710249Rat
7489035Mir6328microRNA 63282028853002885396Rat
7513962LOC102554813uncharacterized LOC1025548132016156941622041Rat
7624899H2-M10.6lhistocompatibility 2, M region locus 10.6 like2019582701965247Rat
7661101LOC102553878uncharacterized LOC1025538782039398263944890Rat
7736232Abhd17c-ps3abhydrolase domain containing 17C, depalmitoylase, pseudogene 32025688122573376Rat
7678499LOC102553505uncharacterized LOC1025535052029620292972097Rat
7707260LOC102549726uncharacterized LOC1025497262038765633879281Rat
7730633Rps2-ps32ribosomal protein S2, pseudogene 322024915222492383Rat
11357632LOC108353253uncharacterized LOC1083532532032606973290136Rat
11436027LOC108349032uncharacterized LOC1083490322038206733830868Rat
11396817LOC108353257uncharacterized LOC1083532572052713225274062Rat
11477629LOC108349035uncharacterized LOC1083490352044758274479937Rat
11496771Smim40small integral membrane protein 402049786584989050Rat
41203922LOC120098829uncharacterized LOC1200988292033180513324485Rat
41359868Brd2lbromodomain containing 2 like2047150494726873Rat
41360187LOC120099074small nucleolar RNA SNORA512017261281726261Rat
41360741LOC120098827uncharacterized LOC1200988272031788873183700Rat
41363335Trnaa-agc96transfer RNA alanine (anticodon AGC) 962049960874996159Rat
41176734LOC120098833uncharacterized LOC1200988332034373733439343Rat
41213255LOC120098965uncharacterized LOC1200989652052967725304377Rat
41154967LOC120098963uncharacterized LOC1200989632051928055201154Rat
41288091RT1-O1l1RT1 class Ib, locus O1 like 12026240732658023Rat
41100225LOC120098968uncharacterized LOC1200989682027081982732345Rat
41396061LOC120099048U6 spliceosomal RNA2037745723774677Rat
41289706LOC120098824uncharacterized LOC1200988242031507553162973Rat
41072487LOC120098979uncharacterized LOC1200989792039009763906605Rat
41104675Snord48small nucleolar RNA, C/D box 482038772833877346Rat
41374192Snord83Small nucleolar RNA SNORD832035787663578840Rat
41106045LOC120099050U6 spliceosomal RNA2049281454928241Rat
41005805RT1-CE15-ps1RT1 class I, locus CE15, pseudogene 12026132432618150Rat
40991350LOC120098978uncharacterized LOC1200989782040846124087472Rat
41049112LOC120098832uncharacterized LOC1200988322033588293382786Rat
41079206LOC120099056small nucleolar RNA SNORD832035839713584049Rat
41318103Snora38small nucleolar RNA, H/ACA box 382036609003661033Rat
41315246LOC120098897uncharacterized LOC1200988972048430814847572Rat
41062511Snord52small nucleolar RNA, C/D box 522038784123878477Rat
41016453LOC120098811uncharacterized LOC1200988112050991415106643Rat
41066463LOC120098828uncharacterized LOC1200988282032790753280604Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
11206D20Arb21642026463952646556Ratregion
11206D20Arb21642026664952666654Ratregion
11207D20Wox52592026588952659158Ratregion
11208D20Mgh32462034177563417890Ratregion
11208D20Mgh32462035168013516931Ratregion
11209D20Wox42412034177613417890Ratregion
11209D20Wox42412035168063516931Ratregion
34349D20Mgh61202015826631582799Ratregion
34749D20UW11522036216493621791Ratregion
34749D20UW11522036216493621791Ratregion
11428D20Wox31152036216563621771Ratregion
11428D20Wox31152036216563621771Ratregion
37594D20Rat411952046066074606812Ratregion
35188D20Rat12282016589031659140Ratregion
35593D20Rat171722033967533396913Ratregion
38324D20Rat321602048391514839323Ratregion
40208D20Rat471392015278421527959Ratregion
38826D20Rat421412044596984459841Ratregion
41466D20Rat451252053045755304690Ratregion
41562D20Rat461682028925972892739Ratregion
43140D20Rat712322028836772883902Ratregion
43141D20Rat662022046754394675614Ratregion
45668D20Got21272030900783090202Ratregion
45669D20Got41742037758303776003Ratregion
66471D20Uia11402044487204448860Ratregion
1576369D20Ztm21592051064685106627Ratregion
1576378D20Ztm11742036215993621773Ratregion
1576378D20Ztm11742036215993621773Ratregion
1630310D20Got1021622041463734146535Ratregion
1631186D20Ulb12212015973001597521Ratregion
1626730D20Rhw111862046093814609567Ratregion
1626764D20Rhw91812046044034604582Ratregion
1626768D20Rhw131522052205125220664Ratregion
1626778D20Rhw101662046066464606812Ratregion
1638494D20Got1261792016360171636193Ratregion
1639768D20Wox122032038688473869052Ratregion
1633553D20Wox152026464072646531Ratregion
1633553D20Wox152026665072666629Ratregion
2303197D20Yum621502041275334127683Ratregion
2303199D20Yum581702039985813998751Ratregion
2303201D20Yum91562018750751875233Ratregion
2303203D20Yum512212037340773734302Ratregion
2303205D20Yum711522044233414423493Ratregion
2303207D20Yum571792039658813966060Ratregion
2303209D20Yum761052047090294709134Ratregion
2303209D20Yum761052047090294709134Ratregion
2303211D20Yum611662040994114099577Ratregion
2303213D20Yum361562029236622924126Ratregion
2303213D20Yum361562029239702924126Ratregion
2303215D20Yum651062042423524242458Ratregion
2303219D20Yum551612038975213897682Ratregion
2303221D20Yum51682017577611757929Ratregion
2303223D20Yum671792042743464274525Ratregion
2303223D20Yum671792042770004277180Ratregion
2303225D20Yum631572041714334171590Ratregion
2303227D20Yum781522047678524768004Ratregion
2303227D20Yum781522047678524768004Ratregion
2303229D20Yum202152021981452198360Ratregion
2303231D20Yum291162025773842577501Ratregion
2303233D20Yum501552037025943702749Ratregion
2303235D20Yum371862029776932977879Ratregion
2303237D20Yum842392026612162661459Ratregion
2303239D20Yum591742040310684031242Ratregion
2303241D20Yum281652025552972555462Ratregion
2303243D20Yum821512049295044929655Ratregion
2303245D20Yum101542019203081920462Ratregion
2303247D20Yum311792026884992688678Ratregion
2303249D20Yum641542042014954201649Ratregion
2303251D20Yum381512030050823005233Ratregion
2303253D20Yum602040571584057419Ratregion
2303253D20Yum602040572774057419Ratregion
2303255D20Yum411672031366703136837Ratregion
2303257D20Yum71752018274471827622Ratregion
2303259D20Yum192021026992102918Ratregion
2303259D20Yum192022231852223404Ratregion
2303259D20Yum192022590002259219Ratregion
2303259D20Yum192022884692288688Ratregion
2303259D20Yum192023239562324175Ratregion
2303259D20Yum192024206172420836Ratregion
2303261D20Yum32042016792611679465Ratregion
2303263D20Yum61962017823541782550Ratregion
2303265D20Yum472272035761103576337Ratregion
2303267D20Yum402372031078673108104Ratregion
2303269D20Yum741622045763954576557Ratregion
2303271D20Yum422452031660293166274Ratregion
2303273D20Yum702272044095874409812Ratregion
2303275D20Yum491852036473353647520Ratregion
2303277D20Yum21762016229321623108Ratregion
2303279D20Yum142102020646862064896Ratregion
2303281D20Yum341662028072422807408Ratregion
2303283D20Yum42062016967321696938Ratregion
2303285D20Yum231572022772142277371Ratregion
2303287D20Yum481922036268273627019Ratregion
2303287D20Yum481922036268273627019Ratregion
2303289D20Yum522232037500983750321Ratregion
2303291D20Yum791582047956504795808Ratregion
2303293D20Yum331632027664602766623Ratregion
2303295D20Yum122152019739651974180Ratregion
2303297D20Yum751832046262034626386Ratregion
2303299D20Yum531972038366033836800Ratregion
2303301D20Yum391672030573303057497Ratregion
2303305D20Yum691892043432284343417Ratregion
2303307D20Yum731142045224654522579Ratregion
2303307D20Yum731142045224654522797Ratregion
2303309D20Yum721692044931384493307Ratregion
7206058Tubb52012029159292916130Ratregion
7206082Pou5f13472032245213224868Ratregion
7206734MARC_5897-5898:997299407:12592048180114818559Ratregion
7206776RH6471111072050874405087471Ratregion
5036051Zfp2974542049672254967679Ratregion
5036189D17Dgm21952046004294600624Ratregion
5036334H2-D11562049085014908657Ratregion
5036516Tctex52022016036571603859Ratregion
5039116RH1275211862026449982645184Ratregion
5039134RH1275322032033293163329519Ratregion
5031244PMC112151P14702036230593623529Ratregion
5031244PMC112151P14702036230593623529Ratregion
5031256PMC116546P11712036235303623701Ratregion
5031256PMC116546P11712036235303623701Ratregion
5025988RH1304731512045183044518455Ratregion
5028591AI3260742072037195393719746Ratregion
7205922UniSTS:4634054202047875704788444Ratregion
5028753RH1421991832046667174666900Ratregion
5034400BE1170581502028555672855717Ratregion
5034450AA9003791862036763863676977Ratregion
5034480BG3725722062037926423793155Ratregion
5026550RH1326411822017098361710018Ratregion
5034660BF3908041852041366264136811Ratregion
5026672RH1330972142045959994596213Ratregion
5029529Bat1_microsatellite1412035727293572876Ratregion
5032479D17Ertd710e2252039196383919863Ratregion
5027173G351001392015533051553432Ratregion
5029743BI2844841902027253132725503Ratregion
5032801RH1353492002026455442645744Ratregion
5027519AI255840982039763003976398Ratregion
5032973RH1371622322049207674921002Ratregion
5030335AI1132372152036204783620693Ratregion
5030335AI1132372152036204783620693Ratregion
5025356RH1279991942038435753843769Ratregion
5033427RH1387921462040999164100062Ratregion
5033455RH1388961202037275253727645Ratregion
5033661RH1396421882049372464937434Ratregion
5030981BF4053041642026775592677730Ratregion
5031159BI2987341542026850512685205Ratregion
5031159BI2987341542027619432762097Ratregion
5051911RH947291752036241973624375Ratregion
5051911RH947291752036241973624375Ratregion
5052061RH948173302036226943623024Ratregion
5052061RH948173302036226943623024Ratregion
5051276RH1345401812038057873806488Ratregion
5051913RH947301452036216583621793Ratregion
5051913RH947301452036216583621793Ratregion
5057247AA9260632152049764974976712Ratregion
5055647RH1439211712034372183437388Ratregion
5055647RH1439211712035045463504716Ratregion
5058600BI2843062062041363854136591Ratregion
5058656BE1022691692051094135109582Ratregion
5056361RH1443342602035726013572969Ratregion
5052549AI450394942028778142877908Ratregion
5058954BF3938581402048307114830851Ratregion
5058200BI2777091972049824174982614Ratregion
5053205RH1425141002037813183781418Ratregion
5058452BE0961391512016157631615914Ratregion
5058492AW5238911012026519642652065Ratregion
5057844BF3862482032052737815273984Ratregion
5049826RH1337042142037191303719391Ratregion
5049906RH1337501912041477934147984Ratregion
5049974RH1337892182017065081706726Ratregion
7193040Rxrb02048206574821131Ratregion
5050382RH1340241802051004935100673Ratregion
5051671Rxrb2882048188814820582Ratregion
5051715RH94616902040265094026599Ratregion
5041592RH1289461852038728853873070Ratregion
5041670RH1289912102046722414672451Ratregion
5041828RH1290821692029179092918078Ratregion
5040910RH1285541802050601945060374Ratregion
5044600RH1306972172049665244966741Ratregion
5041050RH1286341952020197052020049Ratregion
5041594RH1289472052050226445022847Ratregion
5041598RH1289491802049786694978849Ratregion
5045780RH1313742052016048491605054Ratregion
5046034RH1315202132027253662725579Ratregion
5046070RH1315411812031795223179703Ratregion
5041826RH1290811632037955793795742Ratregion
5044844RH1308362072039758063976336Ratregion
5048724RH1330692012041571914157392Ratregion
5046292RH1316681942028616622861856Ratregion
5046306RH1316772062020881932088399Ratregion
5046306RH1316772062023094672309673Ratregion
5046592RH1318422122016045981604808Ratregion
5047544RH1323881832046931924693375Ratregion
5047544RH1323881832046931924693375Ratregion
5046166RH1315962182038586363858854Ratregion
5047646RH1324471802032022713202451Ratregion
5049182RH1333331942048284584828652Ratregion
5046662RH1318821502041180034118153Ratregion
5046728RH1319201832029284482928631Ratregion
5049232RH1333611902028937742893964Ratregion
5048046RH1326772032032645543264757Ratregion
5048046RH1326772032032862503286454Ratregion
5048046RH1326772032033656903365894Ratregion
5048160RH1327432192027832782783761Ratregion
5046938RH13204102030936733094016Ratregion
5048212RH1327731532046522064653401Ratregion
5048212RH1327731532046522064653401Ratregion
5047106RH1321371972036977273697924Ratregion
5048384RH1328721962036384753638774Ratregion
5048576RH132983982026794032679501Ratregion
5049522RH1335291532045966024596755Ratregion
5049578RH13356102033108593311041Ratregion
5049578RH13356102033517533351935Ratregion
5040020RH1280431812028439812844162Ratregion
5040094RH1280852132037615043761717Ratregion
5042648RH1295601892052020735202262Ratregion
5042660RH1295672122052019995202211Ratregion
5039338RH1276491822029159642916146Ratregion
5039362RH1276622102036276373627847Ratregion
5039362RH1276622102036276373627847Ratregion
5040506RH1283231922039930113993203Ratregion
5042260RH1293321872048263274826514Ratregion
5042402RH1294132052049569494957154Ratregion
5040746RH1284591892028150852815274Ratregion
5040886RH1285402092032225723222781Ratregion
5043344RH1299721902037051103705300Ratregion
5043582RH13010802049207224920922Ratregion
7192235D20Wox122042038688463869052Ratregion
5072778RH1370481862037051153705301Ratregion
5071940RH1353732052036519103652637Ratregion
5072084RH1366422152048941464894361Ratregion
5073932RH1377222182019603251960542Ratregion
5074022RH1377741552049786924978847Ratregion
5075544RH1386551712036243603624532Ratregion
5075544RH1386551712036243603624532Ratregion
5072552RH1369152162047070454707261Ratregion
5072552RH1369152162047070454707261Ratregion
5076652RH1393001602052825785282738Ratregion
5076756RH1393601722017083311708503Ratregion
5076798RH1393842042041357964136000Ratregion
5077632RH1398681912046563654656556Ratregion
5077722RH1399202152037608083761023Ratregion
5077736RH1399281872028890112889198Ratregion
5076822RH1393982272046563174656544Ratregion
5075694RH1387421372049575204957657Ratregion
5076288RH1390891892041613384161713Ratregion
5077998RH1400822102028101602810370Ratregion
5078746RH1405282272015934971593724Ratregion
5079980RH1413132062049219834922189Ratregion
5078186RH1401931942038976813897875Ratregion
5078264RH1402392162026443762644590Ratregion
5078264RH1402392162026648532665068Ratregion
5078896RH1406141912049485254948716Ratregion
5078568RH1404191992017105451710744Ratregion
5079300RH1409011512029178632918014Ratregion
5070974RH1348141842040265584026742Ratregion
5073334RH1373761502027998512800001Ratregion
5080420RH1415691802033285753328755Ratregion
5080420RH1415691802033285753328755Ratregion
5080420RH1415691802034315273431707Ratregion
5080420RH1415691802034315273431707Ratregion
5078672RH1404821322041323614132493Ratregion
5078716RH1405092222049372124937434Ratregion
5071400RH1350601922037451353745327Ratregion
5071660RH1352112142041361834136397Ratregion
5074338RH1379591892020057682005957Ratregion
5066704AU0482001262046161384616264Ratregion
5070135RH94492952046723604672455Ratregion
5070201RH945301872038729183873105Ratregion
5070211RH94536892047539554754044Ratregion
5060654BE1041851042049381004938204Ratregion
5060676BE0988921722036889303689103Ratregion
5062480BE1067281572049584824958639Ratregion
5062754AW5342601582015887201588878Ratregion
5062800AW5345051512051008355100986Ratregion
5065894AA9979091322036054513605583Ratregion
5065438BE1154942122040909764091188Ratregion
5064018BI2960251602052320725232232Ratregion
5062728AW5341061762052273405227516Ratregion
5066056BF4132352012040766934076894Ratregion
5061146BI2930461612032058003205961Ratregion
5062936BE1134821512041807094180860Ratregion
5066352PMC162222P19282041494854150413Ratregion
5064956BF4053322002041246334125169Ratregion
5082179BI2803351552033769373377091Ratregion
5087138BQ1943501662033815393381705Ratregion
5087138BQ1943501662034812553481421Ratregion
5082653BE1199391692041474994147668Ratregion
5087560PMC314357P14892038567183857207Ratregion
5087560PMC314357P14892038713103871800Ratregion
5087785D17Dgm5752046701594670234Ratregion
5087914H2-Q63612049057184906260Ratregion
5082835BF3902031652049645194964684Ratregion
5087518PMC26794P36722036230583623730Ratregion
5087518PMC26794P36722036230583623730Ratregion
5087530PMC275467P44792052011935201672Ratregion
5083787AI5995271982051291445129342Ratregion
5088853AU0488091972046094154609612Ratregion
5084460AI1768041012041517444151845Ratregion
5084500AI2352232242048521044852328Ratregion
5084518AI1775601112034447173445771Ratregion
5084572AI0139412282040870984087326Ratregion
5084720AI0082581242050565025056626Ratregion
5081823BI2737851742029159642916138Ratregion
5082079BF4159531322020166862016818Ratregion
5084930AI2367511222028886512888773Ratregion
5088153Trim266562017111981711854Ratregion
5080934RH1418682082049225914922798Ratregion
5085493AI5480471642028573642857528Ratregion
5081384AI4539612092041482174148512Ratregion
5081234RH1420432062036937483693954Ratregion
5086553BM3858171882048243484824536Ratregion
5085689BM3834641752034224963422670Ratregion
5084022AI2324781342049214324921566Ratregion
5503258UniSTS:2376241832049663694966552Ratregion
5503262UniSTS:2376262382048168724817110Ratregion
5503354CGCb741762047316994731873Ratregion
5503354CGCb741762047316994731873Ratregion
5503520H2-Ke610272048273294828356Ratregion
5503522UniSTS:46341511942050098835011077Ratregion
5503524Slc39a712342048251084826342Ratregion
5503528UniSTS:46343714872049247334926220Ratregion
5507585Aif102036510593651818Ratregion
5503560UniSTS:46395902036228633623794Ratregion
5503560UniSTS:46395902036228633623794Ratregion
5503648UniSTS:4654675612041616764162237Ratregion
5504522PMC26660P43182029155792915897Ratregion
5505126H2-T234392026711772672392Ratregion
5505982UniSTS:4967391022029289402929042Ratregion
5506310Tap214532046374924638945Ratregion
5506310Tap214532046374924638945Ratregion
5506169UniSTS:4985067482037451873745935Ratregion
5506207Pou5f11772032233763223553Ratregion
5506231Clic11552037650253765180Ratregion
5499635MARC_5887-5888:991939775:17322041545724155304Ratregion
5500011UniSTS:2361251432050112135011477Ratregion
5499619MARC_3347-3348:991937077:11952037040623705128Ratregion
5500469RH12686602036798163680353Ratregion
5500507RH12688102035725693572935Ratregion
5503264UniSTS:2376302142040999204100134Ratregion
5501516RH358712462036778353678288Ratregion
5501760MARC_11957-11958:1003854518:15572036629913663548Ratregion
5501728UniSTS:2670092022029158572916059Ratregion
5502146MARC_5857-5858:997299374:102036512403651828Ratregion
5502150MARC_6301-6302:997299518:102048177794818347Ratregion
5502124MARC_5045-5046:996690083:15632036726193673182Ratregion
5502132MARC_5411-5412:996690356:11742036763813676960Ratregion
5502299RH1243321632041324554132618Ratregion
Position Markers

Flank 1: (D20Rat45)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2205,304,575 - 5,304,690 (+)MAPPER
Rnor_6.0206,567,419 - 6,567,533NCBI
Rnor_5.0208,810,219 - 8,810,333UniSTS
RGSC_v3.46133,455,626 - 133,455,718RGD
RGSC_v3.4205,447,380 - 5,447,494UniSTS
RGSC_v3.1205,447,483 - 5,447,954RGD
Celera206,868,428 - 6,868,552UniSTS
SHRSP x BN Map200.0UniSTS
SHRSP x BN Map200.0RGD
Flank 2: (D20Rat47)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2201,527,842 - 1,527,959 (+)MAPPER
Rnor_6.0202,018,654 - 2,018,770NCBI
Rnor_5.0204,059,279 - 4,059,395UniSTS
RGSC_v3.4201,616,333 - 1,616,449UniSTS
RGSC_v3.4201,616,332 - 1,616,449RGD
RGSC_v3.1201,616,333 - 1,616,449RGD
Celera202,236,388 - 2,236,504UniSTS
RH 3.4 Map2015.8RGD
RH 3.4 Map2015.8UniSTS
RH 2.0 Map200.0RGD
SHRSP x BN Map200.0RGD
Cytogenetic Map20p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2013624629Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2026463954597031Rat
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2026463954597031Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
737973Pia21Pristane induced arthritis QTL 214.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2036216564606812Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat
7175099Tcs2T cell selection QTL 2T cell selectionexpression2045040024693102Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2046066076691706Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
7175096Tcs1T cell selection QTL 1T cell selectionexpression2047270785024580Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general inducing agent: pristane (2,6,10,14-tetramethylpentadecane) 2306838
qtl_general measurement method: arthritis was induced at the age of 7-9 week by an intradermal injection at the tail tip with pristane (2,6,10,14-tetramethylpentadecane) and was monitored by a macroscopic scoring system of the four limbs ranging from 0 to 15 (1 point for each swollen or red toe, 1 point for midfoot digit and knuckle, and 5 points for a swollen ankle) 2306838
qtl_general software used: StatView from Stata, College Station TX 2306838
qtl_general number of animals used: 91 2306838