Rxrb (retinoid X receptor beta) - Rat Genome Database

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Gene: Rxrb (retinoid X receptor beta) Rattus norvegicus
Analyze
Symbol: Rxrb
Name: retinoid X receptor beta
RGD ID: 3611
Description: Enables nuclear receptor activity and nuclear receptor binding activity. Involved in nuclear receptor-mediated signaling pathway and regulation of myelination. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Orthologous to human RXRB (retinoid X receptor beta); PARTICIPATES IN retinoic acid signaling pathway; eicosanoid signaling pathway via peroxisome proliferator-activated receptor gamma; non-small cell lung carcinoma pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 3,3',5-triiodo-L-thyronine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: nuclear receptor co-regulator 1; nuclear receptor coregulator 1; nuclear receptor subfamily 2 group B member 2; Retinoic acid receptor beta; retinoic acid receptor RXR-beta; retinoic acid receptor, beta; RXR-beta
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,818,707 - 4,824,968 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl204,818,709 - 4,825,359 (-)EnsemblGRCr8
mRatBN7.2204,816,813 - 4,823,267 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,816,815 - 4,828,773 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx205,568,399 - 5,574,352 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0204,930,151 - 4,936,106 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,411,249 - 5,417,188 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,822,673 - 3,829,138 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,823,042 - 3,829,140 (+)Ensemblrn6Rnor6.0
Rnor_5.0205,901,997 - 5,908,469 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4204,954,336 - 4,960,880 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera206,417,001 - 6,422,951 (-)NCBICelera
RGSC_v3.1204,955,307 - 4,960,928 (-)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
2,2-(2-Chlorophenyl-4'-chlorophenyl)-1,1-dichloroethene  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trichlorophenol  (ISO)
2,4-dichlorophenol  (ISO)
2,4-dinitrotoluene  (EXP)
2-hydroxyphytanic acid  (ISO)
2-isopropylphenol  (ISO)
2-tert-Butylphenol  (ISO)
3,3',5-triiodo-L-thyronine  (EXP)
3,4-Dichlorophenol  (ISO)
3-chloropropane-1,2-diol  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-tert-Octylphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
8-Br-cAMP  (ISO)
9-cis-retinoic acid  (EXP,ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (EXP,ISO)
all-trans-retinol  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bexarotene  (ISO)
bezafibrate  (ISO)
bicalutamide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (EXP)
calciol  (ISO)
capsaicin  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cholesterol  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
DDT  (ISO)
Di-n-decyl phthalate  (ISO)
Di-n-hexyl phthalate  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
diethyl phthalate  (ISO)
diheptyl phthalate  (ISO)
Diisodecyl phthalate  (ISO)
diisononyl phthalate  (ISO)
Dimethyl phthalate  (ISO)
dipentyl phthalate  (ISO)
dipropyl phthalate  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
fentin hydroxide  (ISO)
fludioxonil  (ISO)
folic acid  (ISO)
gamma-hexachlorocyclohexane  (ISO)
hexachlorobenzene  (ISO)
indometacin  (EXP)
inulin  (ISO)
isotretinoin  (EXP)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
lithocholic acid  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methoprene  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
NCX-4040  (ISO)
nickel sulfate  (ISO)
nitrates  (ISO)
ozone  (ISO)
p-tert-Amylphenol  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
parathion  (ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phthalic acid  (ISO)
phytanic acid  (ISO)
pirinixic acid  (EXP)
potassium dichromate  (ISO)
raloxifene  (ISO)
rimonabant  (ISO)
sodium chloride  (EXP)
tert-butyl hydroperoxide  (ISO)
testosterone enanthate  (ISO)
Tetrachlorobisphenol A  (ISO)
titanium dioxide  (ISO)
tributylstannane  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. International Union of Pharmacology. LXIII. Retinoid X receptors. Germain P, etal., Pharmacol Rev. 2006 Dec;58(4):760-72.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Retinoic acid regulates myelin formation in the peripheral nervous system. Latasa MJ, etal., Glia. 2010 Sep;58(12):1451-64.
5. Vitamin A regulation of gene expression: molecular mechanism of a prototype gene. McGrane MM J Nutr Biochem. 2007 Aug;18(8):497-508. Epub 2007 Feb 22.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. RXR beta: a coregulator that enhances binding of retinoic acid, thyroid hormone, and vitamin D receptors to their cognate response elements. Yu VC, etal., Cell 1991 Dec 20;67(6):1251-66.
Additional References at PubMed
PMID:1312497   PMID:2554307   PMID:7823919   PMID:7831303   PMID:7990953   PMID:9428411   PMID:9892670   PMID:12477932   PMID:12767074   PMID:17182792   PMID:18922886   PMID:19100254  
PMID:23017197   PMID:23318218   PMID:23327965   PMID:28267642  


Genomics

Comparative Map Data
Rxrb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,818,707 - 4,824,968 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl204,818,709 - 4,825,359 (-)EnsemblGRCr8
mRatBN7.2204,816,813 - 4,823,267 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,816,815 - 4,828,773 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx205,568,399 - 5,574,352 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0204,930,151 - 4,936,106 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,411,249 - 5,417,188 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,822,673 - 3,829,138 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,823,042 - 3,829,140 (+)Ensemblrn6Rnor6.0
Rnor_5.0205,901,997 - 5,908,469 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4204,954,336 - 4,960,880 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera206,417,001 - 6,422,951 (-)NCBICelera
RGSC_v3.1204,955,307 - 4,960,928 (-)NCBI
Cytogenetic Map20p12NCBI
RXRB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38633,193,588 - 33,200,853 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl633,193,588 - 33,200,666 (-)Ensemblhg38GRCh38
GRCh37633,161,365 - 33,168,630 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36633,269,343 - 33,276,410 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34633,269,343 - 33,276,410NCBI
Celera634,715,731 - 34,722,798 (-)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef632,903,933 - 32,910,518 (-)NCBIHuRef
CHM1_1633,163,235 - 33,170,347 (-)NCBICHM1_1
T2T-CHM13v2.0633,014,941 - 33,022,206 (-)NCBIT2T-CHM13v2.0
Rxrb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,250,786 - 34,257,377 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,250,786 - 34,257,373 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381734,031,812 - 34,038,403 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,031,812 - 34,038,399 (+)Ensemblmm10GRCm38
MGSCv371734,168,797 - 34,175,344 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361733,642,306 - 33,648,853 (+)NCBIMGSCv36mm8
Celera1736,777,982 - 36,784,532 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Rxrb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,767,833 - 1,774,401 (-)Ensembl
ChiLan1.0NW_0049554371,767,833 - 1,774,401 (-)NCBIChiLan1.0ChiLan1.0
RXRB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2547,671,456 - 47,678,303 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1643,543,098 - 43,549,972 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0632,765,818 - 32,772,876 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1633,880,758 - 33,887,887 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl633,880,758 - 33,887,820 (-)EnsemblpanPan2panpan1.1
RXRB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,657,058 - 2,663,648 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,657,792 - 2,663,706 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha122,738,197 - 2,744,918 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0122,987,789 - 2,994,513 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl122,987,789 - 2,994,459 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1122,655,982 - 2,662,701 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0122,737,356 - 2,744,070 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0122,811,921 - 2,818,640 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rxrb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,297,888 - 38,305,050 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,655,209 - 25,662,416 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647625,655,164 - 25,662,369 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RXRB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl725,236,004 - 25,242,875 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1725,236,005 - 25,242,842 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2729,760,855 - 29,767,618 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RXRB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11738,874,467 - 38,881,527 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1738,874,681 - 38,881,653 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604433,027,908 - 33,034,945 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rxrb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,606,955 - 23,613,508 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475423,607,046 - 23,613,399 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rxrb
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1188,288,378 - 8,294,517 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rxrb
46 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:147
Count of miRNA genes:107
Interacting mature miRNAs:131
Transcripts:ENSRNOT00000041613
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015332005306452Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7175096Tcs1T cell selection QTL 1T cell selection trait (VT:0004917)expression2047282825026446Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362632310078622Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036263239244918Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
Rxrb  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,818,881 - 4,820,582 (-)MAPPERmRatBN7.2
Rnor_6.0203,825,372 - 3,827,071NCBIRnor6.0
Rnor_5.0205,904,703 - 5,906,402UniSTSRnor5.0
RGSC_v3.4204,956,996 - 4,958,695UniSTSRGSC3.4
Celera206,419,067 - 6,420,766UniSTS
Cytogenetic Map20p12UniSTS
BM385817  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,824,348 - 4,824,536 (-)MAPPERmRatBN7.2
Rnor_6.0203,821,418 - 3,821,605NCBIRnor6.0
Rnor_5.0205,900,749 - 5,900,936UniSTSRnor5.0
RGSC_v3.4204,962,463 - 4,962,650UniSTSRGSC3.4
Celera206,424,534 - 6,424,721UniSTS
RH 3.4 Map2068.9UniSTS
Cytogenetic Map20p12UniSTS
MARC_6301-6302:997299518:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8204,819,673 - 4,820,242 (+)Marker Load Pipeline
mRatBN7.2204,817,779 - 4,818,347 (-)MAPPERmRatBN7.2
Rnor_6.0203,827,606 - 3,828,173NCBIRnor6.0
Rnor_5.0205,906,937 - 5,907,504UniSTSRnor5.0
RGSC_v3.4204,955,301 - 4,956,462UniSTSRGSC3.4
RGSC_v3.4204,955,301 - 4,955,869UniSTSRGSC3.4
Celera206,417,966 - 6,418,533UniSTS
Cytogenetic Map20p12UniSTS
UniSTS:237626  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8204,818,767 - 4,819,004 (+)Marker Load Pipeline
mRatBN7.2204,816,872 - 4,817,110 (-)MAPPERmRatBN7.2
Rnor_6.0203,828,843 - 3,829,080NCBIRnor6.0
Rnor_5.0205,908,174 - 5,908,411UniSTSRnor5.0
RGSC_v3.4204,954,394 - 4,954,631UniSTSRGSC3.4
Celera206,417,059 - 6,417,296UniSTS
Cytogenetic Map20p12UniSTS
Rxrb  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8204,822,550 - 4,823,024 (+)Marker Load Pipeline
mRatBN7.2204,820,657 - 4,821,131 (-)MAPPERmRatBN7.2
Rnor_6.0203,824,823 - 3,825,296NCBIRnor6.0
Rnor_5.0205,904,154 - 5,904,627UniSTSRnor5.0
RGSC_v3.4204,958,772 - 4,959,245UniSTSRGSC3.4
Celera206,420,843 - 6,421,316UniSTS
Cytogenetic Map20p12UniSTS
MARC_5897-5898:997299407:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8204,819,904 - 4,820,453 (+)Marker Load Pipeline
mRatBN7.2204,818,011 - 4,818,559 (-)MAPPERmRatBN7.2
Rnor_6.0203,827,394 - 3,827,941NCBIRnor6.0
Rnor_5.0205,906,725 - 5,907,272UniSTSRnor5.0
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 92 59 6 356 192 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000041613   ⟹   ENSRNOP00000040499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,816,815 - 4,828,773 (-)Ensembl
Rnor_6.0 Ensembl203,823,042 - 3,829,140 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079967   ⟹   ENSRNOP00000074360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,827,367 - 3,827,906 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081588   ⟹   ENSRNOP00000068701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,827,086 - 3,828,288 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000084638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,825,928 - 3,829,140 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,826,907 - 3,827,589 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087670   ⟹   ENSRNOP00000070175
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,823,596 - 3,824,966 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,826,729 - 3,827,926 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,824,176 - 3,825,802 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118105   ⟹   ENSRNOP00000087218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl204,818,713 - 4,825,359 (-)Ensembl
mRatBN7.2 Ensembl204,816,819 - 4,828,773 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000171523   ⟹   ENSRNOP00000109374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl204,818,709 - 4,825,359 (-)Ensembl
RefSeq Acc Id: NM_206849   ⟹   NP_996731
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,818,709 - 4,824,659 (-)NCBI
mRatBN7.2204,816,815 - 4,822,766 (-)NCBI
Rnor_6.0203,823,188 - 3,829,138 (+)NCBI
Rnor_5.0205,901,997 - 5,908,469 (+)NCBI
RGSC_v3.4204,954,336 - 4,960,880 (-)RGD
Celera206,417,001 - 6,422,951 (-)RGD
Sequence:
RefSeq Acc Id: XM_006255960   ⟹   XP_006256022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,818,707 - 4,824,968 (-)NCBI
mRatBN7.2204,816,813 - 4,823,267 (-)NCBI
Rnor_6.0203,822,673 - 3,829,138 (+)NCBI
Rnor_5.0205,901,997 - 5,908,469 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255961   ⟹   XP_006256023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,818,707 - 4,824,411 (-)NCBI
mRatBN7.2204,816,813 - 4,822,516 (-)NCBI
Rnor_6.0203,823,458 - 3,829,138 (+)NCBI
Rnor_5.0205,901,997 - 5,908,469 (+)NCBI
Sequence:
RefSeq Acc Id: NP_996731   ⟸   NM_206849
- UniProtKB: A6JJF7 (UniProtKB/TrEMBL),   Q499T0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256022   ⟸   XM_006255960
- Peptide Label: isoform X1
- UniProtKB: A0A0G2QBZ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256023   ⟸   XM_006255961
- Peptide Label: isoform X2
- UniProtKB: F1M9P1 (UniProtKB/TrEMBL),   Q6MGB3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070175   ⟸   ENSRNOT00000087670
Ensembl Acc Id: ENSRNOP00000040499   ⟸   ENSRNOT00000041613
Ensembl Acc Id: ENSRNOP00000074360   ⟸   ENSRNOT00000079967
Ensembl Acc Id: ENSRNOP00000068701   ⟸   ENSRNOT00000081588
Ensembl Acc Id: ENSRNOP00000087218   ⟸   ENSRNOT00000118105
Ensembl Acc Id: ENSRNOP00000109374   ⟸   ENSRNOT00000171523
Protein Domains
NR LBD   Nuclear receptor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P49743-F1-model_v2 AlphaFold P49743 1-458 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701317
Promoter ID:EPDNEW_R11841
Type:multiple initiation site
Name:Rxrb_1
Description:retinoid X receptor beta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0203,823,002 - 3,823,062EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3611 AgrOrtholog
BioCyc Gene G2FUF-4543 BioCyc
Ensembl Genes ENSRNOG00000000464 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000171523 ENTREZGENE
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot
  3.30.50.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7933132 IMAGE-MGC_LOAD
InterPro NHR-like_dom_sf UniProtKB/Swiss-Prot
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot
  Nuclear_hormone_rcpt_NR2 UniProtKB/Swiss-Prot
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot
  Retinoid-X_rcpt/HNF4 UniProtKB/Swiss-Prot
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot
  Znf_NHR/GATA UniProtKB/Swiss-Prot
MGC_CLONE MGC:124514 IMAGE-MGC_LOAD
NCBI Gene Rxrb ENTREZGENE
PANTHER NUCLEAR HORMONE RECEPTOR UniProtKB/Swiss-Prot
Pfam Hormone_recep UniProtKB/Swiss-Prot
  zf-C4 UniProtKB/Swiss-Prot
PhenoGen Rxrb PhenoGen
PRINTS RETINOIDXR UniProtKB/Swiss-Prot
  STRDHORMONER UniProtKB/Swiss-Prot
  STROIDFINGER UniProtKB/Swiss-Prot
PROSITE NR_LBD UniProtKB/Swiss-Prot
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000464 RatGTEx
SMART HOLI UniProtKB/Swiss-Prot
  ZnF_C4 UniProtKB/Swiss-Prot
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot
  SSF48508 UniProtKB/Swiss-Prot
UniProt A0A0G2QBZ5 ENTREZGENE
  A0A8I6A7J9_RAT UniProtKB/TrEMBL
  A0ABK0LTG5_RAT UniProtKB/TrEMBL
  A6JJF7 ENTREZGENE, UniProtKB/TrEMBL
  F1M9P1 ENTREZGENE
  P49743 ENTREZGENE
  Q499T0 ENTREZGENE, UniProtKB/TrEMBL
  Q6MGB3 ENTREZGENE, UniProtKB/TrEMBL
  RXRB_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Rxrb  Retinoic acid receptor, beta      Symbol and Name status set to approved 70586 APPROVED