| 1641893 | Alcrsp7 | Alcohol response QTL 7 | | | Alcohol response | loss of righting reflex | 20 | 1 | 27477794 | Rat |
| 2317851 | Alcrsp22 | Alcohol response QTL 22 | 3.2 | .05 | Alcohol response | | 20 | 1 | 27477794 | Rat |
| 1641915 | Colcr9 | Colorectal carcinoma resistance QTL 9 | 2.97 | .0024 | Colorectal carcinoma resistance | | 20 | 1 | 32560683 | Rat |
| 6893685 | Bw111 | Body weight QTL 111 | 2.7 | .004 | Body weight | salt-loaded | 20 | 1 | 32910115 | Rat |
| 2305926 | Iddm37 | Insulin dependent diabetes mellitus QTL 37 | 6 | | Glucose level | | 20 | 1616332 | 46616332 | Rat |
| 2306850 | Pia40 | Pristane induced arthritis QTL 40 | | .0001 | Joint/bone inflammation | pristane induced | 20 | 1616449 | 5447380 | Rat |
| 2317057 | Aia27 | Adjuvant induced arthritis QTL 27 | 2.83 | | Joint/bone inflammation | adjuvant induced | 20 | 3039759 | 37383914 | Rat |
| 1598816 | Memor12 | Memory QTL 12 | 2.4 | | Memory | navigation-spatial | 20 | 3055886 | 48055886 | Rat |
| 1300152 | Bp195 | Blood pressure QTL 195 | 3.46 | | Blood pressure | salt-loaded systolic | 20 | 3660638 | 9534510 | Rat |
| 1331772 | Cdexp2 | CD45RC expression in CD8 T cells QTL 2 | 5.7 | | CD8 T cell CD45RC expression level | | 20 | 3660638 | 10410227 | Rat |
| 61432 | Cia1 | Collagen induced arthritis QTL 1 | | | Joint/bone inflammation | type II collagen induced | 20 | 3660646 | 14605852 | Rat |
| 61474 | Eae1 | Experimental allergic encephalomyelitis QTL 1 | 3 | | Brain/spinal cord inflammation | severity of disease | 20 | 4740609 | 6880472 | Rat |
| 1558640 | Prcs2 | Prostate cancer susceptibility QTL 2 | 3.3 | | Prostate tumor susceptibility | lesions with ACI-type nuclei | 20 | 4740609 | 18411969 | Rat |
| 4889857 | Pur27 | Proteinuria QTL 27 | 12.2 | .001 | Renal function | urine protein level | 20 | 4740609 | 18411969 | Rat |
| 7175096 | Tcs1 | T cell selection QTL 1 | | | T cell selection | expression | 20 | 4864606 | 5176689 | Rat |