Rps18 (ribosomal protein S18) - Rat Genome Database

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Gene: Rps18 (ribosomal protein S18) Rattus norvegicus
Analyze
Symbol: Rps18 (Ensembl: B3galt4)
Name: ribosomal protein S18 (Ensembl:Beta-1,3-galactosyltransferase 4)
RGD ID: 3595
Description: Enables protein kinase binding activity. Predicted to be involved in ganglioside biosynthetic process; protein glycosylation; and translation. Part of cytosolic small ribosomal subunit. Orthologous to human RPS18 (ribosomal protein S18); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S18; Ke3; MGC156545; small ribosomal subunit protein uS13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,933,741 - 4,937,423 (+)NCBIGRCr8
mRatBN7.2204,931,427 - 4,935,538 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,931,768 - 4,938,315 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl10101,204,500 - 101,205,146 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx205,655,349 - 5,659,060 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,017,094 - 5,020,805 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,497,879 - 5,501,592 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,441,875 - 5,445,553 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,441,876 - 5,445,553 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,500,487 - 7,504,165 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,083,626 - 5,087,304 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1205,083,852 - 5,087,531 (+)NCBI
Celera206,516,103 - 6,519,781 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
amino acid  (ISO)
amiodarone  (EXP)
ammonium chloride  (EXP)
antimycin A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
azoxystrobin  (ISO)
benzalkonium chloride  (ISO)
benzatropine  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clofibrate  (EXP)
clofibric acid  (EXP)
Cuprizon  (ISO)
cypermethrin  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
dihydroartemisinin  (ISO)
dioxygen  (ISO)
ethanol  (ISO)
fenpyroximate  (ISO)
folic acid  (ISO)
genistein  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
lead diacetate  (ISO)
miconazole  (ISO)
N-nitrosodiethylamine  (EXP)
omeprazole  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
pyrimidifen  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (ISO)
sunitinib  (ISO)
tebufenpyrad  (ISO)
temozolomide  (ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29. Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Cytogenetic localization of the growth and reproduction complex (Grc) in the rat and in the mouse and its position in relation to RT1.EC and other loci in the rat MHC. Helou K, etal., Hereditas 1999;130(2):105-9.
5. An overview of pre-ribosomal RNA processing in eukaryotes. Henras AK, etal., Wiley Interdiscip Rev RNA. 2015 Mar-Apr;6(2):225-42. doi: 10.1002/wrna.1269. Epub 2014 Oct 27.
6. Synaptotagmin 11 interacts with components of the RNA-induced silencing complex RISC in clonal pancreatic beta-cells. Milochau A, etal., FEBS Lett. 2014 Jun 27;588(14):2217-22. doi: 10.1016/j.febslet.2014.05.031. Epub 2014 May 29.
7. The S18 ribosomal protein is a putative substrate for Ca2+/calmodulin-activated protein kinase II. Mishra-Gorur K, etal., J Biol Chem 2002 Sep 13;277(37):33537-40. Epub 2002 Jul 26.
8. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:1300474   PMID:1872840   PMID:8706699   PMID:12477932   PMID:15060004   PMID:15883184   PMID:16452087   PMID:16854843   PMID:19056867   PMID:19903879   PMID:19946888   PMID:20458337  
PMID:21170055   PMID:21423176   PMID:21630459   PMID:21700703   PMID:22658674   PMID:22681889   PMID:22720776   PMID:23376485   PMID:23736358   PMID:23979707   PMID:24625528   PMID:24930395  
PMID:35352799  


Genomics

Comparative Map Data
Rps18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,933,741 - 4,937,423 (+)NCBIGRCr8
mRatBN7.2204,931,427 - 4,935,538 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,931,768 - 4,938,315 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl10101,204,500 - 101,205,146 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx205,655,349 - 5,659,060 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,017,094 - 5,020,805 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,497,879 - 5,501,592 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,441,875 - 5,445,553 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,441,876 - 5,445,553 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,500,487 - 7,504,165 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,083,626 - 5,087,304 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1205,083,852 - 5,087,531 (+)NCBI
Celera206,516,103 - 6,519,781 (+)NCBICelera
Cytogenetic Map20p12NCBI
RPS18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38633,272,075 - 33,276,511 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl633,272,075 - 33,276,511 (+)EnsemblGRCh38hg38GRCh38
GRCh37633,239,852 - 33,244,288 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36633,347,830 - 33,352,259 (+)NCBINCBI36Build 36hg18NCBI36
Build 34633,347,829 - 33,352,259NCBI
Celera634,794,207 - 34,798,639 (+)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef632,981,509 - 32,985,938 (+)NCBIHuRef
CHM1_1633,241,785 - 33,246,217 (+)NCBICHM1_1
T2T-CHM13v2.0633,093,437 - 33,097,873 (+)NCBIT2T-CHM13v2.0
Rps18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,170,972 - 34,174,639 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,170,973 - 34,174,975 (-)EnsemblGRCm39 Ensembl
GRCm381733,951,998 - 33,955,665 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,951,999 - 33,956,001 (-)EnsemblGRCm38mm10GRCm38
MGSCv371734,088,944 - 34,092,586 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,562,453 - 33,566,095 (-)NCBIMGSCv36mm8
Celera1736,704,880 - 36,708,531 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Rps18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,833,125 - 1,838,827 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554371,833,338 - 1,838,776 (+)NCBIChiLan1.0ChiLan1.0
RPS18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2547,749,839 - 47,754,353 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1643,621,506 - 43,626,020 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0632,844,234 - 32,848,748 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1633,958,471 - 33,962,940 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl633,958,471 - 33,962,941 (+)Ensemblpanpan1.1panPan2
RPS18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,712,958 - 2,718,657 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,712,952 - 2,718,663 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha122,794,099 - 2,799,574 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0123,043,936 - 3,049,831 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl123,043,930 - 3,049,837 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1122,711,826 - 2,717,304 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0122,793,331 - 2,798,802 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0122,868,026 - 2,873,489 (+)NCBIUU_Cfam_GSD_1.0
Rps18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,365,797 - 38,370,494 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,589,814 - 25,593,905 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647625,589,769 - 25,594,467 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl729,638,833 - 29,642,912 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1729,638,856 - 29,642,912 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2734,142,621 - 34,146,677 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11738,800,532 - 38,805,005 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604433,107,166 - 33,111,637 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,544,043 - 23,548,301 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475423,544,042 - 23,548,935 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rps18
65 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:95
Interacting mature miRNAs:100
Transcripts:ENSRNOT00000037499
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2046066076691706Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
7175096Tcs1T cell selection QTL 1T cell selectionexpression2047270785024580Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2 3 1
Medium 1 43 57 41 16 41 8 11 74 35 41 10 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_213557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC128962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ223831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC126072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX883042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000000550   ⟹   ENSRNOP00000000550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,935,970 - 4,938,315 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000037499   ⟹   ENSRNOP00000030371
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,442,390 - 5,445,509 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000046010   ⟹   ENSRNOP00000047371
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10101,204,500 - 101,205,146 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092262
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,441,892 - 5,442,488 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,445,281 - 5,445,553 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092476   ⟹   ENSRNOP00000075857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,931,768 - 4,937,663 (+)Ensembl
Rnor_6.0 Ensembl205,441,876 - 5,445,550 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,443,590 - 5,445,552 (+)Ensembl
RefSeq Acc Id: NM_213557   ⟹   NP_998722
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,933,745 - 4,937,423 (+)NCBI
mRatBN7.2204,931,860 - 4,935,538 (+)NCBI
Rnor_6.0205,441,875 - 5,445,553 (+)NCBI
Rnor_5.0207,500,487 - 7,504,165 (+)NCBI
RGSC_v3.4205,083,626 - 5,087,304 (+)RGD
Celera206,516,103 - 6,519,781 (+)RGD
Sequence:
RefSeq Acc Id: XM_063279022   ⟹   XP_063135092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,933,741 - 4,937,423 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_998722   ⟸   NM_213557
- UniProtKB: P62271 (UniProtKB/Swiss-Prot),   A0JN05 (UniProtKB/Swiss-Prot),   A6JJH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075857   ⟸   ENSRNOT00000092476
RefSeq Acc Id: ENSRNOP00000030371   ⟸   ENSRNOT00000037499
RefSeq Acc Id: ENSRNOP00000047371   ⟸   ENSRNOT00000046010
RefSeq Acc Id: ENSRNOP00000000550   ⟸   ENSRNOT00000000550
RefSeq Acc Id: XP_063135092   ⟸   XM_063279022
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62271-F1-model_v2 AlphaFold P62271 1-152 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701410
Promoter ID:EPDNEW_R11933
Type:single initiation site
Name:Rps18l1_1
Description:ribosomal protein S18-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,441,877 - 5,441,937EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3595 AgrOrtholog
BioCyc Gene G2FUF-4520 BioCyc
Ensembl Genes ENSRNOG00000000471 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000028505 Ensembl
  ENSRNOG00000033152 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00055007299 UniProtKB/Swiss-Prot
  ENSRNOG00055007555 UniProtKB/Swiss-Prot
  ENSRNOG00055033090 UniProtKB/Swiss-Prot
  ENSRNOG00060004883 UniProtKB/Swiss-Prot
  ENSRNOG00060024247 UniProtKB/Swiss-Prot
  ENSRNOG00060031467 UniProtKB/Swiss-Prot
  ENSRNOG00065018398 UniProtKB/Swiss-Prot
  ENSRNOG00065022090 UniProtKB/Swiss-Prot
  ENSRNOG00065031286 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000046010.4 UniProtKB/Swiss-Prot
  ENSRNOT00000092476.2 UniProtKB/TrEMBL
  ENSRNOT00055012157 UniProtKB/Swiss-Prot
  ENSRNOT00055012618 UniProtKB/Swiss-Prot
  ENSRNOT00055057192 UniProtKB/Swiss-Prot
  ENSRNOT00060008125 UniProtKB/Swiss-Prot
  ENSRNOT00060041938 UniProtKB/Swiss-Prot
  ENSRNOT00060054531 UniProtKB/Swiss-Prot
  ENSRNOT00065030863 UniProtKB/Swiss-Prot
  ENSRNOT00065037618 UniProtKB/Swiss-Prot
  ENSRNOT00065053963 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.8.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.550.50 UniProtKB/TrEMBL
  30s ribosomal protein s13, domain 2 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:8362450 IMAGE-MGC_LOAD
InterPro 30s_Rbsml_prot_S13_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glyco_trans_31 UniProtKB/TrEMBL
  Ribosomal_S13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S13-like_H2TH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S13_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:100360679 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  rno:294282 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:156545 IMAGE-MGC_LOAD
NCBI Gene Rps18 ENTREZGENE
PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  40S RIBOSOMAL PROTEIN S18 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BETA-1,3-GALACTOSYLTRANSFERASE 4 UniProtKB/TrEMBL
  PTHR11214 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
  Ribosomal_S13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rps18 PhenoGen
PIRSF Ribosomal_S13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S13_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIBOSOMAL_S13_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000471 RatGTEx
  ENSRNOG00000028505 RatGTEx
  ENSRNOG00000033152 RatGTEx
  ENSRNOG00055007299 RatGTEx
  ENSRNOG00055007555 RatGTEx
  ENSRNOG00055033090 RatGTEx
  ENSRNOG00060004883 RatGTEx
  ENSRNOG00060024247 RatGTEx
  ENSRNOG00060031467 RatGTEx
  ENSRNOG00065018398 RatGTEx
  ENSRNOG00065022090 RatGTEx
  ENSRNOG00065031286 RatGTEx
Superfamily-SCOP S13-like H2TH domain UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A0A8L2URK8_RAT UniProtKB/TrEMBL
  A0JN05 ENTREZGENE
  A6JJH6 ENTREZGENE, UniProtKB/TrEMBL
  P62271 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0JN05 UniProtKB/Swiss-Prot
  P25232 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Rps18  Ribosomal protein S18      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_regulation phosphorylated by the delta-isoform of Ca(2+)/calmodulin-activated protein kinase II (CaMK II) 1300474