F2r (coagulation factor II (thrombin) receptor) - Rat Genome Database

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Gene: F2r (coagulation factor II (thrombin) receptor) Rattus norvegicus
Analyze
Symbol: F2r
Name: coagulation factor II (thrombin) receptor
RGD ID: 2586
Description: Predicted to enable several functions, including G-protein alpha-subunit binding activity; G-protein beta-subunit binding activity; and thrombin-activated receptor activity. Involved in several processes, including establishment of synaptic specificity at neuromuscular junction; negative regulation of glomerular filtration; and positive regulation of vasoconstriction. Located in neuromuscular junction and postsynaptic membrane. Used to study hypertension. Biomarker of brain edema and brain ischemia. Orthologous to human F2R (coagulation factor II thrombin receptor); PARTICIPATES IN G protein mediated signaling pathway; protease mediated signaling via protease-activated receptor 1; calcium/calcium-mediated signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coagulation factor II receptor; MGC93622; PAR-1; Par1; protease-activated receptor 1; proteinase-activated receptor 1; Thrombin receptor; TRGPC
RGD Orthologs
Human
Mouse
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: F2rem1Mcwi  
Genetic Models: T2DN-F2rem1Mcwi
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8228,604,066 - 28,620,579 (-)NCBIGRCr8
mRatBN7.2226,869,343 - 26,885,856 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl226,868,404 - 26,885,870 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx233,907,656 - 33,924,163 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0232,007,753 - 32,024,260 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0226,823,845 - 26,840,377 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0226,118,760 - 26,135,340 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl226,118,760 - 26,135,340 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0245,254,489 - 45,257,761 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4225,985,800 - 25,989,072 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1225,906,181 - 25,909,441 (-)NCBI
Celera222,933,182 - 22,949,696 (-)NCBICelera
RH 3.4 Map213.3RGD
Cytogenetic Map2q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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F2rRatNeurodevelopmental Disorders  ISOF2R (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
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F2rRatExperimental Liver Cirrhosis  ISOF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
F2rRatExperimental Neoplasms  ISOF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17374729
F2rRathepatitis  ISOF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21907177
F2rRatInflammation  ISOF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20008134
F2rRatliver cirrhosis  ISOF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21037076
F2rRatsteatotic liver disease  ISOF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20008134 more ...
F2rRatStomach Neoplasms  ISOF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16367923

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F2rRat(1->4)-beta-D-glucan multiple interactionsISOF2r (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of F2R mRNACTDPMID:36331819
F2rRat1,2-dimethylhydrazine multiple interactionsISOF2r (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of F2R mRNACTDPMID:22206623
F2rRat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of F2R mRNACTDPMID:25380136
F2rRat1-naphthyl isothiocyanate multiple interactionsISOF2r (Mus musculus)6480464F2R protein promotes the reaction [1-Naphthylisothiocyanate results in increased expression of CCL2 mRNA] more ...CTDPMID:21037076
F2rRat1-naphthyl isothiocyanate increases expressionISOF2r (Mus musculus)64804641-Naphthylisothiocyanate results in increased expression of F2R mRNACTDPMID:21037076
F2rRat1-naphthyl isothiocyanate multiple interactionsISOF2R (Homo sapiens)6480464F2R protein promotes the reaction [1-Naphthylisothiocyanate results in increased expression of [ITGB6 protein co-treated with ITGA5 protein]]CTDPMID:21037076
F2rRat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of F2R mRNACTDPMID:32145629
F2rRat17beta-estradiol affects expressionISOF2r (Mus musculus)6480464Estradiol affects the expression of F2R mRNACTDPMID:39298647
F2rRat17beta-hydroxy-5alpha-androstan-3-one decreases expressionISOF2r (Mus musculus)6480464Dihydrotestosterone results in decreased expression of F2R mRNACTDPMID:17023530
F2rRat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISOF2r (Mus musculus)6480464[2 more ...CTDPMID:25510870
F2rRat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOF2R (Homo sapiens)64804642 more ...CTDPMID:19095052
F2rRat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISOF2r (Mus musculus)6480464[2 more ...CTDPMID:25510870
F2rRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOF2R (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of F2R mRNACTDPMID:12377990
F2rRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of F2R mRNACTDPMID:33387578
F2rRat2,3,7,8-tetrachlorodibenzodioxine affects response to substanceISOF2r (Mus musculus)6480464F2R affects the susceptibility to TetrachlorodibenzodioxinCTDPMID:27613713
F2rRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOF2r (Mus musculus)6480464F2R gene mutant form inhibits the reaction [Tetrachlorodibenzodioxin results in increased expression of and results in increased secretion of IL6 protein]CTDPMID:27613713
F2rRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOF2r (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of F2R mRNACTDPMID:28922406
F2rRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOF2R (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of F2R mRNACTDPMID:23152189
F2rRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of F2R mRNACTDPMID:22298810
F2rRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOF2r (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of F2R mRNACTDPMID:19770486

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Biological Process
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Original Reference(s)
F2rRatblood coagulation involved_inIEAUniProtKB-KW:KW-00941600115GO_REF:0000043UniProtGO_REF:0000043
F2rRatblood coagulation involved_inIEAInterPro:IPR000935 and InterPro:IPR0039121600115GO_REF:0000002InterProGO_REF:0000002
F2rRatcell-cell junction maintenance involved_inIEAUniProtKB:P25116 and ensembl:ENSP000003213261600115GO_REF:0000107EnsemblGO_REF:0000107
F2rRatcell-cell junction maintenance involved_inISOF2R (Homo sapiens)1624291 PMID:23202369RGDPMID:23202369
F2rRatconnective tissue replacement involved in inflammatory response wound healing involved_inIEAUniProtKB:P25116 and ensembl:ENSP000003213261600115GO_REF:0000107EnsemblGO_REF:0000107
F2rRatconnective tissue replacement involved in inflammatory response wound healing involved_inISOF2R (Homo sapiens)1624291 PMID:9639571RGDPMID:9639571
F2rRatconnective tissue replacement involved in inflammatory response wound healing involved_inISSUniProtKB:P251161600115GO_REF:0000024UniProtGO_REF:0000024
F2rRatdendritic cell homeostasis acts_upstream_of_or_withinIEAUniProtKB:P30558 and ensembl:ENSMUSP000000617541600115GO_REF:0000107EnsemblGO_REF:0000107
F2rRatdendritic cell homeostasis acts_upstream_of_or_withinISOF2r (Mus musculus)1624291MGI:3038377 PMID:18305483RGDPMID:18305483
F2rRatestablishment of synaptic specificity at neuromuscular junction  IDA 1582330 RGD 
F2rRatG protein-coupled receptor signaling pathway  IDA 728482 RGD 
F2rRatG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR000276 and InterPro:IPR0009351600115GO_REF:0000002InterProGO_REF:0000002
F2rRatG protein-coupled receptor signaling pathway involved_inIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
F2rRathemostasis involved_inIEAUniProtKB-KW:KW-03561600115GO_REF:0000043UniProtGO_REF:0000043
F2rRathomeostasis of number of cells within a tissue involved_inISSUniProtKB:P305581600115GO_REF:0000024UniProtGO_REF:0000024
F2rRathomeostasis of number of cells within a tissue acts_upstream_of_or_withinIEAUniProtKB:P30558 and ensembl:ENSMUSP000000617541600115GO_REF:0000107EnsemblGO_REF:0000107
F2rRathomeostasis of number of cells within a tissue acts_upstream_of_or_withinISOF2r (Mus musculus)1624291MGI:3038377 PMID:18305483RGDPMID:18305483
F2rRatinflammatory response involved_inISSUniProtKB:P305581600115GO_REF:0000024UniProtGO_REF:0000024
F2rRatinflammatory response acts_upstream_of_or_withinIEAUniProtKB:P30558 and ensembl:ENSMUSP000000617541600115GO_REF:0000107EnsemblGO_REF:0000107
F2rRatinflammatory response acts_upstream_of_or_withinISOF2r (Mus musculus)1624291MGI:3038377 PMID:18305483RGDPMID:18305483
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Cellular Component
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F2rRatcaveola located_inISOF2R (Homo sapiens)1624291 PMID:17848177RGDPMID:17848177
F2rRatcaveola located_inISSUniProtKB:P251161600115GO_REF:0000024UniProtGO_REF:0000024
F2rRatcaveola located_inIEAUniProtKB:P25116 and ensembl:ENSP000003213261600115GO_REF:0000107EnsemblGO_REF:0000107
F2rRatcell surface located_inIEAUniProtKB:P25116 and ensembl:ENSP000003213261600115GO_REF:0000107EnsemblGO_REF:0000107
F2rRatcell surface located_inISOF2R (Homo sapiens)1624291 PMID:24732013RGDPMID:24732013
F2rRatearly endosome located_inIEAUniProtKB:P25116 and ensembl:ENSP000003213261600115GO_REF:0000107EnsemblGO_REF:0000107
F2rRatearly endosome located_inISOF2R (Homo sapiens)1624291 PMID:22547407 and PMID:24732013RGDPMID:22547407 and PMID:24732013
F2rRatlate endosome located_inIEAUniProtKB:P25116 and ensembl:ENSP000003213261600115GO_REF:0000107EnsemblGO_REF:0000107
F2rRatlate endosome located_inISOF2R (Homo sapiens)1624291 PMID:24732013RGDPMID:24732013
F2rRatmembrane located_inIEAInterPro:IPR000276 more ...1600115GO_REF:0000002InterProGO_REF:0000002
F2rRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
F2rRatneuromuscular junction  IDA 1582330 RGD 
F2rRatplasma membrane is_active_inIBAMGI:1298208 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
F2rRatplasma membrane located_inIEAUniProtKB:P25116 and ensembl:ENSP000003213261600115GO_REF:0000107EnsemblGO_REF:0000107
F2rRatplasma membrane located_inIDA 1582290PMID:15145074UniProt 
F2rRatplasma membrane located_inISOF2R (Homo sapiens)1624291 PMID:22547407 and PMID:9038223RGDPMID:22547407 and PMID:9038223
F2rRatplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
F2rRatplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
F2rRatplatelet dense tubular network located_inISSUniProtKB:P251161600115GO_REF:0000024UniProtGO_REF:0000024
F2rRatplatelet dense tubular network located_inISOF2R (Homo sapiens)1624291 PMID:9038223RGDPMID:9038223
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Molecular Function
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F2rRatG protein-coupled receptor activity enablesISSUniProtKB:P305581600115GO_REF:0000024UniProtGO_REF:0000024
F2rRatG protein-coupled receptor activity enablesIEAInterPro:IPR000276 and InterPro:IPR0009351600115GO_REF:0000002InterProGO_REF:0000002
F2rRatG protein-coupled receptor activity enablesIEAUniProtKB:P30558 and ensembl:ENSMUSP000000617541600115GO_REF:0000107EnsemblGO_REF:0000107
F2rRatG protein-coupled receptor activity enablesIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
F2rRatG protein-coupled receptor activity enablesISOF2r (Mus musculus)1624291 PMID:20215560RGDPMID:20215560
F2rRatG-protein alpha-subunit binding enablesIEAUniProtKB:P30558 and ensembl:ENSMUSP000000617541600115GO_REF:0000107EnsemblGO_REF:0000107
F2rRatG-protein alpha-subunit binding enablesISOF2r (Mus musculus)1624291 PMID:20215560RGDPMID:20215560
F2rRatG-protein alpha-subunit binding enablesISSUniProtKB:P305581600115GO_REF:0000024UniProtGO_REF:0000024
F2rRatG-protein beta-subunit binding enablesISSUniProtKB:P305581600115GO_REF:0000024UniProtGO_REF:0000024
F2rRatG-protein beta-subunit binding enablesISOF2r (Mus musculus)1624291 PMID:20215560RGDPMID:20215560
F2rRatG-protein beta-subunit binding enablesIEAUniProtKB:P30558 and ensembl:ENSMUSP000000617541600115GO_REF:0000107EnsemblGO_REF:0000107
F2rRatprotein binding enablesISOF2R (Homo sapiens)1624291UniProtKB:D4ADZ2 more ...RGDPMID:17299037 more ...
F2rRatsignaling receptor binding enablesIEAUniProtKB:P25116 and ensembl:ENSP000003213261600115GO_REF:0000107EnsemblGO_REF:0000107
F2rRatsignaling receptor binding enablesISOF2R (Homo sapiens)1624291UniProtKB:P25116 and PMID:1672265RGDPMID:1672265
F2rRatthrombin-activated receptor activity  TAS 728482 RGD 
F2rRatthrombin-activated receptor activity enablesIBAPANTHER:PTN002796613 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
F2rRatthrombin-activated receptor activity enablesIEAInterPro:IPR0039121600115GO_REF:0000002InterProGO_REF:0000002
F2rRatthrombin-activated receptor activity enablesISOF2R (Homo sapiens)1624291 PMID:10692450 and PMID:1672265RGDPMID:10692450 and PMID:1672265
F2rRatthrombin-activated receptor activity enablesIEAUniProtKB:P25116 and ensembl:ENSP000003213261600115GO_REF:0000107EnsemblGO_REF:0000107
F2rRatthrombin-activated receptor activity enablesISSUniProtKB:P251161600115GO_REF:0000024UniProtGO_REF:0000024
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RGD Manual Annotations


  

Imported Annotations - KEGG (archival)

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F2rRatcalcium/calcium-mediated signaling pathway   IEA 6907045 KEGGrno:04020
F2rRatcoagulation cascade pathway   IEA 6907045 KEGGrno:04610
F2rRatcomplement system pathway  IEA 6907045 KEGGrno:04610
F2rRatendocytosis pathway  IEA 6907045 KEGGrno:04144
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Original Reference(s)
F2rRatabnormal nociception after inflammation  IDA 1582348 RGD 

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#
Reference Title
Reference Citation
1. Development of proteinase-activated receptor 1 antagonists as therapeutic agents for thrombosis, restenosis and inflammatory diseases. Ahn HS, etal., Curr Pharm Des. 2003;9(28):2349-65.
2. Proteinase-activated receptor-1 agonists attenuate nociception in response to noxious stimuli. Asfaha S, etal., Br J Pharmacol. 2002 Mar;135(5):1101-6.
3. Mechanisms of anticoagulant and cytoprotective actions of the protein C pathway. Bouwens EA, etal., J Thromb Haemost. 2013 Jun;11 Suppl 1:242-53. doi: 10.1111/jth.12247.
4. Vascular thrombin receptor regulation in hypertensive rats. Capers Q 4th, etal., Circ Res. 1997 Jun;80(6):838-44.
5. Protease-activated receptor 1 suppresses Helicobacter pylori gastritis via the inhibition of macrophage cytokine secretion and interferon regulatory factor 5. Chionh YT, etal., Mucosal Immunol. 2015 Jan;8(1):68-79. doi: 10.1038/mi.2014.43. Epub 2014 May 28.
6. Thrombin inhibits NMDA-mediated nociceptive activity in the mouse: possible mediation by endothelin. Fang M, etal., J Physiol. 2003 Jun 15;549(Pt 3):903-17. Epub 2003 Apr 25.
7. Cross Talk Pathways Between Coagulation and Inflammation. Foley JH and Conway EM, Circ Res. 2016 Apr 29;118(9):1392-408. doi: 10.1161/CIRCRESAHA.116.306853.
8. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
9. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
10. Bidirectional regulation of renal hemodynamics by activation of PAR1 and PAR2 in isolated perfused rat kidney. Gui Y, etal., Am J Physiol Renal Physiol. 2003 Jul;285(1):F95-104. Epub 2003 Mar 18.
11. Thrombin-receptor activation and thrombin-induced brain tolerance. Jiang Y, etal., J Cereb Blood Flow Metab. 2002 Apr;22(4):404-10.
12. A protective role of protease-activated receptor 1 in rat gastric mucosa. Kawabata A, etal., Gastroenterology. 2004 Jan;126(1):208-19.
13. Receptor-activating peptides for PAR-1 and PAR-2 relax rat gastric artery via multiple mechanisms. Kawabata A, etal., Life Sci. 2004 Oct 15;75(22):2689-702.
14. The PAR-1-activating peptide attenuates carrageenan-induced hyperalgesia in rats. Kawabata A, etal., Peptides. 2002 Jun;23(6):1181-3.
15. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
16. Role and expression of thrombin receptor PAR-1 in muscle cells and neuromuscular junctions during the synapse elimination period in the neonatal rat. Lanuza MA, etal., J Neurosci Res. 2003 Jul 1;73(1):10-21.
17. Thrombin receptor: An endogenous inhibitor of inflammatory pain, activating opioid pathways. Martin L, etal., Pain. 2009 Nov;146(1-2):121-9. doi: 10.1016/j.pain.2009.07.016. Epub 2009 Aug 11.
18. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
19. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
20. Thrombin receptor expression in normal and atherosclerotic human arteries. Nelken NA, etal., J Clin Invest. 1992 Oct;90(4):1614-21.
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PMID:1672265   PMID:9038223   PMID:9639571   PMID:9701242   PMID:10692450   PMID:11447194   PMID:12477932   PMID:12761501   PMID:12767046   PMID:15637325   PMID:15829229   PMID:16403464  
PMID:16934779   PMID:16942465   PMID:17023547   PMID:17136598   PMID:17324513   PMID:17360912   PMID:17404307   PMID:17468933   PMID:17623652   PMID:17848177   PMID:17940541   PMID:18035722  
PMID:18083763   PMID:18224254   PMID:18305483   PMID:18398001   PMID:18502312   PMID:18620539   PMID:19092124   PMID:19263282   PMID:19278590   PMID:19427359   PMID:19625519   PMID:19639229  
PMID:19937805   PMID:20164183   PMID:20215560   PMID:20511551   PMID:20819545   PMID:20875131   PMID:21162277   PMID:21209875   PMID:21302496   PMID:21414931   PMID:21827709   PMID:21854391  
PMID:21859963   PMID:22547407   PMID:22831762   PMID:22859370   PMID:22889888   PMID:22952817   PMID:23202369   PMID:23564130   PMID:23937416   PMID:24732013   PMID:24916589   PMID:25843668  
PMID:25931468   PMID:27012211   PMID:27385592   PMID:27910893   PMID:28059686   PMID:30391321   PMID:30566391   PMID:32583327   PMID:32726124   PMID:33176506   PMID:34831181   PMID:35923090  
PMID:36809978   PMID:37172885   PMID:37557948   PMID:37722138   PMID:39067398  



F2r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8228,604,066 - 28,620,579 (-)NCBIGRCr8
mRatBN7.2226,869,343 - 26,885,856 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl226,868,404 - 26,885,870 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx233,907,656 - 33,924,163 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0232,007,753 - 32,024,260 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0226,823,845 - 26,840,377 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0226,118,760 - 26,135,340 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl226,118,760 - 26,135,340 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0245,254,489 - 45,257,761 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4225,985,800 - 25,989,072 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1225,906,181 - 25,909,441 (-)NCBI
Celera222,933,182 - 22,949,696 (-)NCBICelera
RH 3.4 Map213.3RGD
Cytogenetic Map2q12NCBI
F2R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38576,716,126 - 76,735,770 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl576,716,126 - 76,735,770 (+)EnsemblGRCh38hg38GRCh38
GRCh37576,011,951 - 76,031,595 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36576,047,542 - 76,067,054 (+)NCBINCBI36Build 36hg18NCBI36
Build 34576,047,546 - 76,067,054NCBI
Celera571,905,802 - 71,925,529 (+)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef571,219,384 - 71,239,536 (+)NCBIHuRef
CHM1_1575,445,069 - 75,464,798 (+)NCBICHM1_1
T2T-CHM13v2.0577,198,009 - 77,217,657 (+)NCBIT2T-CHM13v2.0
F2r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391395,738,288 - 95,754,974 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1395,738,311 - 95,754,995 (-)EnsemblGRCm39 Ensembl
GRCm381395,601,780 - 95,618,466 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1395,601,803 - 95,618,487 (-)EnsemblGRCm38mm10GRCm38
MGSCv371396,371,744 - 96,388,388 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361396,702,488 - 96,719,132 (-)NCBIMGSCv36mm8
Celera1399,218,583 - 99,235,265 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1350.21NCBI
F2r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542524,144,905 - 24,164,498 (-)NCBIChiLan1.0ChiLan1.0
F2R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1329,870,159 - 29,889,837 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl329,872,155 - 29,889,687 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha331,109,597 - 31,128,481 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0329,789,482 - 29,809,069 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl329,789,492 - 29,813,913 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1329,726,270 - 29,745,147 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0329,706,677 - 29,725,998 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0330,076,456 - 30,095,361 (-)NCBIUU_Cfam_GSD_1.0
F2r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213190,611,944 - 190,631,736 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936549225,371 - 247,042 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936549226,508 - 247,024 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
F2R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl285,641,474 - 85,656,636 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1285,642,794 - 85,659,133 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2287,279,785 - 87,296,140 (-)NCBISscrofa10.2Sscrofa10.2susScr3
F2R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1470,992,406 - 71,010,512 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl470,992,477 - 71,009,456 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604919,823,537 - 19,842,658 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
F2r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248691,181,354 - 1,200,664 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248691,181,288 - 1,200,751 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in F2r
57 total Variants

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:85
Interacting mature miRNAs:90
Transcripts:ENSRNOT00000074626
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 25 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22238462767384627Rat
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat

1 to 10 of 25 rows
RH94524  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2226,870,257 - 26,870,436 (+)MAPPERmRatBN7.2
Rnor_6.0226,119,675 - 26,119,853NCBIRnor6.0
Rnor_5.0245,255,404 - 45,255,582UniSTSRnor5.0
RGSC_v3.4225,986,715 - 25,986,893UniSTSRGSC3.4
Celera222,934,097 - 22,934,275UniSTS
RH 3.4 Map213.3UniSTS
Cytogenetic Map2q12UniSTS
RH140970  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2226,869,682 - 26,869,867 (+)MAPPERmRatBN7.2
Rnor_6.0226,119,100 - 26,119,284NCBIRnor6.0
Rnor_5.0245,254,829 - 45,255,013UniSTSRnor5.0
RGSC_v3.4225,986,140 - 25,986,324UniSTSRGSC3.4
Celera222,933,522 - 22,933,706UniSTS
RH 3.4 Map213.3UniSTS
Cytogenetic Map2q12UniSTS
PMC156147P9  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2226,871,915 - 26,872,025 (+)MAPPERmRatBN7.2
Rnor_6.0226,121,333 - 26,121,442NCBIRnor6.0
Rnor_5.0245,257,062 - 45,257,171UniSTSRnor5.0
RGSC_v3.4225,988,373 - 25,988,482UniSTSRGSC3.4
Celera222,935,755 - 22,935,864UniSTS
Cytogenetic Map2q12UniSTS


This gene F2r is modified in the following models/strains:




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000074626   ⟹   ENSRNOP00000065624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl226,868,404 - 26,885,870 (-)Ensembl
Rnor_6.0 Ensembl226,118,760 - 26,135,340 (-)Ensembl
RefSeq Acc Id: NM_012950   ⟹   NP_037082
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8228,604,066 - 28,620,579 (-)NCBI
mRatBN7.2226,869,343 - 26,885,856 (-)NCBI
Rnor_6.0226,118,760 - 26,135,340 (-)NCBI
Rnor_5.0245,254,489 - 45,257,761 (-)NCBI
RGSC_v3.4225,985,800 - 25,989,072 (-)RGD
Celera222,933,182 - 22,949,696 (-)RGD
Sequence:
Protein RefSeqs NP_037082 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA42274 (Get FASTA)   NCBI Sequence Viewer  
  AAH85759 (Get FASTA)   NCBI Sequence Viewer  
  EDM10103 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000065624
GenBank Protein P26824 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_037082   ⟸   NM_012950
- Peptide Label: precursor
- UniProtKB: P26824 (UniProtKB/Swiss-Prot),   Q5U324 (UniProtKB/TrEMBL),   M0R834 (UniProtKB/TrEMBL),   A0A9K3Y7Y4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000065624   ⟸   ENSRNOT00000074626
Name Modeler Protein Id AA Range Protein Structure
AF-P26824-F1-model_v2 AlphaFold P26824 1-432 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13691077
Promoter ID:EPDNEW_R1602
Type:multiple initiation site
Name:F2r_1
Description:coagulation factor II receptor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0226,135,365 - 26,135,425EPDNEW


1 to 28 of 28 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-54803 BioCyc
Ensembl Genes ENSRNOG00000048043 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000074626 ENTREZGENE
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7106133 IMAGE-MGC_LOAD
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  Protea_act_rcpt UniProtKB/Swiss-Prot
  Thrmbn_rcpt UniProtKB/Swiss-Prot
MGC_CLONE MGC:93622 IMAGE-MGC_LOAD
NCBI Gene 25439 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/Swiss-Prot
  PROTEINASE-ACTIVATED RECEPTOR 1 UniProtKB/Swiss-Prot
Pfam 7tm_1 UniProtKB/Swiss-Prot
PharmGKB F2R RGD
PhenoGen F2r PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot
  PROTEASEAR UniProtKB/Swiss-Prot
  THROMBINR UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000048043 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
TIGR TC228443
UniProt A0A9K3Y7Y4 ENTREZGENE, UniProtKB/TrEMBL
  M0R834 ENTREZGENE
  P26824 ENTREZGENE, UniProtKB/Swiss-Prot
  Q5U324 ENTREZGENE, UniProtKB/TrEMBL
1 to 28 of 28 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 F2r  coagulation factor II (thrombin) receptor    coagulation factor II receptor  Name updated 1299863 APPROVED
2002-11-06 F2r  coagulation factor II receptor    Coagulation factor II (thrombin) receptor  Name updated 625702 APPROVED
2001-10-23 F2r  Thrombin receptor      Name withdrawn 68913 WITHDRAWN
2001-10-23 F2r  Coagulation factor II (thrombin) receptor      Name updated to reflect Human and Mouse nomenclature 68913 APPROVED