Lpp (LIM domain containing preferred translocation partner in lipoma) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Lpp (LIM domain containing preferred translocation partner in lipoma) Rattus norvegicus
Analyze
Symbol: Lpp
Name: LIM domain containing preferred translocation partner in lipoma
RGD ID: 1310535
Description: Predicted to enable metal ion binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in several cellular components, including anchoring junction; cytosol; and nucleus. Predicted to be active in focal adhesion and stress fiber. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human LPP (LIM domain containing preferred translocation partner in lipoma); PARTICIPATES IN E-cadherin signaling pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LIM domain containing preferred translocation partner in lipoma (predicted); LIM domain-containing preferred translocation partner in lipoma; lipoma-preferred partner homolog; Lipoma-preferred-partner; LOC288010; LOC360732; Lpp_predicted; similar to LIM domain containing preferred translocation partner in lipoma
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81189,292,060 - 89,933,973 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1189,305,187 - 89,805,264 (-)EnsemblGRCr8
mRatBN7.21175,787,326 - 76,426,646 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1175,797,078 - 76,422,597 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1184,585,467 - 85,080,546 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01177,220,535 - 77,715,680 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01176,299,777 - 76,794,828 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01179,192,603 - 79,827,858 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1179,205,730 - 79,703,736 (-)Ensemblrn6Rnor6.0
Rnor_5.01180,966,777 - 81,532,915 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41177,963,582 - 78,416,872 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1174,696,679 - 75,188,394 (-)NCBICelera
Cytogenetic Map11q23NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-alpha-phellandrene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,6-dimethoxyphenol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
allethrin  (EXP)
alpha-phellandrene  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crotonaldehyde  (ISO)
cyclosporin A  (ISO)
cyhalothrin  (EXP)
cypermethrin  (EXP,ISO)
DDT  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dimethyl sulfoxide  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
eugenol  (EXP)
fenamidone  (ISO)
fenthion  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furfural  (ISO)
gallic acid  (ISO)
geldanamycin  (ISO)
genistein  (ISO)
hydralazine  (ISO)
hydrazine  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
leflunomide  (ISO)
methidathion  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
ochratoxin A  (ISO)
ozone  (EXP,ISO)
paracetamol  (ISO)
paraquat  (ISO)
parathion  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
Ptaquiloside  (ISO)
pyrethrins  (EXP)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
thiram  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:16641100   PMID:21423176   PMID:23504181  


Genomics

Comparative Map Data
Lpp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81189,292,060 - 89,933,973 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1189,305,187 - 89,805,264 (-)EnsemblGRCr8
mRatBN7.21175,787,326 - 76,426,646 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1175,797,078 - 76,422,597 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1184,585,467 - 85,080,546 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01177,220,535 - 77,715,680 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01176,299,777 - 76,794,828 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01179,192,603 - 79,827,858 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1179,205,730 - 79,703,736 (-)Ensemblrn6Rnor6.0
Rnor_5.01180,966,777 - 81,532,915 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41177,963,582 - 78,416,872 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1174,696,679 - 75,188,394 (-)NCBICelera
Cytogenetic Map11q23NCBI
LPP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383188,153,021 - 188,890,671 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3188,152,994 - 188,890,671 (+)Ensemblhg38GRCh38
GRCh373187,870,809 - 188,608,460 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363189,413,415 - 190,080,135 (+)NCBIBuild 36Build 36hg18NCBI36
Build 343189,413,422 - 190,080,143NCBI
Celera3186,302,146 - 187,042,707 (+)NCBICelera
Cytogenetic Map3q27.3-q28NCBI
HuRef3185,276,702 - 186,012,895 (+)NCBIHuRef
CHM1_13187,834,800 - 188,571,334 (+)NCBICHM1_1
T2T-CHM13v2.03190,970,544 - 191,707,297 (+)NCBIT2T-CHM13v2.0
Lpp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391624,212,100 - 24,811,328 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1624,212,257 - 24,811,328 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381624,393,350 - 24,992,578 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1624,393,507 - 24,992,578 (+)Ensemblmm10GRCm38
MGSCv371624,393,436 - 24,992,664 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361624,308,839 - 24,896,379 (+)NCBIMGSCv36mm8
Celera1624,992,698 - 25,542,701 (+)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1616.17NCBI
Lpp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542019,014,398 - 19,478,472 (-)Ensembl
ChiLan1.0NW_00495542019,014,398 - 19,634,102 (-)NCBIChiLan1.0ChiLan1.0
LPP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22186,022,456 - 186,760,585 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13186,023,356 - 186,765,299 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03185,179,432 - 185,916,477 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13193,738,521 - 194,474,541 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3193,991,530 - 194,462,641 (+)EnsemblpanPan2panpan1.1
LPP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13420,538,580 - 21,157,978 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3420,632,193 - 21,142,914 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3424,650,600 - 25,252,579 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03420,478,361 - 21,091,684 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3420,410,286 - 21,076,578 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13420,506,069 - 21,108,654 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03420,499,818 - 21,102,764 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03420,740,447 - 21,343,608 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lpp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602115,268,388 - 115,917,157 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365781,370,757 - 1,945,623 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365781,362,041 - 2,009,031 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LPP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13125,782,471 - 126,463,303 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113125,782,373 - 126,478,927 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LPP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11582,560,877 - 83,141,838 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1582,867,376 - 83,136,633 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604155,959,509 - 56,722,529 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lpp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473068,136,917 - 68,645,497 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473068,122,915 - 68,757,843 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Lpp
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v149,177,318 - 9,774,505 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:31
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000044279
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)115893182292356038Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)118295102896351019Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat

Markers in Region
D11Got69  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21175,917,320 - 75,917,412 (+)MAPPERmRatBN7.2
Rnor_6.01179,509,003 - 79,509,092NCBIRnor6.0
Rnor_6.01179,322,390 - 79,322,479NCBIRnor6.0
Rnor_5.01181,403,173 - 81,403,262UniSTSRnor5.0
Rnor_5.01181,221,301 - 81,221,390UniSTSRnor5.0
RGSC_v3.41178,081,531 - 78,081,621RGDRGSC3.4
RGSC_v3.41178,081,532 - 78,081,621UniSTSRGSC3.4
Celera1174,807,541 - 74,807,630UniSTS
RGSC_v3.11178,139,121 - 78,139,210RGD
RH 3.4 Map11621.7UniSTS
RH 3.4 Map11621.7RGD
Cytogenetic Map11q23UniSTS
RH133608  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21176,112,643 - 76,112,852 (+)MAPPERmRatBN7.2
Rnor_6.01179,517,498 - 79,517,706NCBIRnor6.0
Rnor_5.01181,212,308 - 81,212,516UniSTSRnor5.0
RGSC_v3.41178,279,749 - 78,279,957UniSTSRGSC3.4
Celera1175,003,220 - 75,003,428UniSTS
RH 3.4 Map11617.5UniSTS
Cytogenetic Map11q23UniSTS
BF388375  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21175,993,675 - 75,993,796 (+)MAPPERmRatBN7.2
Rnor_6.01179,398,798 - 79,398,918NCBIRnor6.0
Rnor_5.01181,326,865 - 81,326,985UniSTSRnor5.0
RGSC_v3.41178,158,217 - 78,158,337UniSTSRGSC3.4
Celera1174,884,025 - 74,884,145UniSTS
RH 3.4 Map11615.9UniSTS
Cytogenetic Map11q23UniSTS
AU048993  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21175,853,897 - 75,854,172 (+)MAPPERmRatBN7.2
Rnor_6.01179,259,276 - 79,259,550NCBIRnor6.0
Rnor_5.01181,466,152 - 81,466,426UniSTSRnor5.0
RGSC_v3.41178,017,490 - 78,017,764UniSTSRGSC3.4
Celera1174,750,002 - 74,750,276UniSTS
Cytogenetic Map11q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC083627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000044279   ⟹   ENSRNOP00000042917
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1189,305,187 - 89,805,264 (-)Ensembl
mRatBN7.2 Ensembl1175,800,345 - 76,360,953 (-)Ensembl
Rnor_6.0 Ensembl1179,205,730 - 79,703,736 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096354   ⟹   ENSRNOP00000083451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1189,305,187 - 89,588,662 (-)Ensembl
mRatBN7.2 Ensembl1175,800,345 - 76,084,116 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107426   ⟹   ENSRNOP00000087235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1175,797,078 - 76,207,599 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113595   ⟹   ENSRNOP00000090019
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1189,305,187 - 89,805,264 (-)Ensembl
mRatBN7.2 Ensembl1175,799,695 - 76,422,597 (-)Ensembl
RefSeq Acc Id: NM_001013864   ⟹   NP_001013886
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,305,185 - 89,805,264 (-)NCBI
mRatBN7.21175,800,455 - 76,300,565 (-)NCBI
Rnor_6.01179,205,728 - 79,703,736 (-)NCBI
Rnor_5.01180,966,777 - 81,532,915 (+)NCBI
RGSC_v3.41177,963,582 - 78,416,872 (-)RGD
Celera1174,696,679 - 75,188,394 (-)RGD
Sequence:
RefSeq Acc Id: XM_006248505   ⟹   XP_006248567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,292,060 - 89,905,505 (-)NCBI
mRatBN7.21175,787,326 - 76,400,832 (-)NCBI
Rnor_6.01179,192,603 - 79,827,638 (-)NCBI
Rnor_5.01180,966,777 - 81,532,915 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006248507   ⟹   XP_006248569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,292,060 - 89,590,004 (-)NCBI
mRatBN7.21175,787,326 - 76,092,129 (-)NCBI
Rnor_6.01179,192,603 - 79,496,549 (-)NCBI
Rnor_5.01180,966,777 - 81,532,915 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597910   ⟹   XP_017453399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,292,060 - 89,933,973 (-)NCBI
mRatBN7.21175,787,326 - 76,426,646 (-)NCBI
Rnor_6.01179,192,603 - 79,827,651 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597911   ⟹   XP_017453400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,292,060 - 89,933,973 (-)NCBI
mRatBN7.21175,787,326 - 76,426,646 (-)NCBI
Rnor_6.01179,192,603 - 79,827,858 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597912   ⟹   XP_017453401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,292,060 - 89,889,574 (-)NCBI
mRatBN7.21175,787,326 - 76,386,526 (-)NCBI
Rnor_6.01179,192,603 - 79,791,960 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597913   ⟹   XP_017453402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,292,060 - 89,933,973 (-)NCBI
mRatBN7.21175,787,326 - 76,426,646 (-)NCBI
Rnor_6.01179,192,603 - 79,827,654 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597915   ⟹   XP_017453404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,292,060 - 89,875,383 (-)NCBI
mRatBN7.21175,787,326 - 76,370,696 (-)NCBI
Rnor_6.01179,192,603 - 79,773,355 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597918   ⟹   XP_017453407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,292,060 - 89,736,854 (-)NCBI
mRatBN7.21175,787,326 - 76,232,156 (-)NCBI
Rnor_6.01179,192,603 - 79,636,072 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088097   ⟹   XP_038944025
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,292,060 - 89,933,973 (-)NCBI
mRatBN7.21175,787,326 - 76,426,646 (-)NCBI
RefSeq Acc Id: XM_039088098   ⟹   XP_038944026
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,292,060 - 89,933,973 (-)NCBI
mRatBN7.21175,787,326 - 76,426,646 (-)NCBI
RefSeq Acc Id: XM_039088099   ⟹   XP_038944027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,292,060 - 89,933,973 (-)NCBI
mRatBN7.21175,787,326 - 76,426,646 (-)NCBI
RefSeq Acc Id: XM_039088102   ⟹   XP_038944030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,292,060 - 89,875,384 (-)NCBI
mRatBN7.21175,787,326 - 76,370,669 (-)NCBI
RefSeq Acc Id: XM_039088103   ⟹   XP_038944031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,292,060 - 89,588,354 (-)NCBI
mRatBN7.21175,787,326 - 76,092,127 (-)NCBI
RefSeq Acc Id: XM_063270369   ⟹   XP_063126439
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,292,060 - 89,933,973 (-)NCBI
RefSeq Acc Id: XM_063270371   ⟹   XP_063126441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,292,060 - 89,875,383 (-)NCBI
RefSeq Acc Id: XM_063270372   ⟹   XP_063126442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,292,060 - 89,736,854 (-)NCBI
RefSeq Acc Id: XM_063270373   ⟹   XP_063126443
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81189,292,060 - 89,590,002 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001013886 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424658 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424659 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424660 (Get FASTA)   NCBI Sequence Viewer  
  NP_001424661 (Get FASTA)   NCBI Sequence Viewer  
  XP_006248567 (Get FASTA)   NCBI Sequence Viewer  
  XP_006248569 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453399 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453400 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453401 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453402 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453404 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453407 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944025 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944026 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944027 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944030 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944031 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126439 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126441 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126442 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126443 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83627 (Get FASTA)   NCBI Sequence Viewer  
  AAH83890 (Get FASTA)   NCBI Sequence Viewer  
  EDL78104 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000042917
  ENSRNOP00000083451
  ENSRNOP00000090019
  ENSRNOP00000090019.1
GenBank Protein Q5XI07 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001013886   ⟸   NM_001013864
- UniProtKB: Q5XI07 (UniProtKB/Swiss-Prot),   A0A8I6A5H9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248567   ⟸   XM_006248505
- Peptide Label: isoform X4
- UniProtKB: Q5XI07 (UniProtKB/Swiss-Prot),   A0A8I6A5H9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248569   ⟸   XM_006248507
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017453400   ⟸   XM_017597911
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017453402   ⟸   XM_017597913
- Peptide Label: isoform X4
- UniProtKB: Q5XI07 (UniProtKB/Swiss-Prot),   A0A8I6A5H9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453399   ⟸   XM_017597910
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017453401   ⟸   XM_017597912
- Peptide Label: isoform X4
- UniProtKB: Q5XI07 (UniProtKB/Swiss-Prot),   A0A8I6A5H9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453404   ⟸   XM_017597915
- Peptide Label: isoform X4
- UniProtKB: Q5XI07 (UniProtKB/Swiss-Prot),   A0A8I6A5H9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453407   ⟸   XM_017597918
- Peptide Label: isoform X4
- UniProtKB: Q5XI07 (UniProtKB/Swiss-Prot),   A0A8I6A5H9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000042917   ⟸   ENSRNOT00000044279
RefSeq Acc Id: XP_038944026   ⟸   XM_039088098
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038944025   ⟸   XM_039088097
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944027   ⟸   XM_039088099
- Peptide Label: isoform X4
- UniProtKB: Q5XI07 (UniProtKB/Swiss-Prot),   A0A8I6A5H9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944030   ⟸   XM_039088102
- Peptide Label: isoform X4
- UniProtKB: Q5XI07 (UniProtKB/Swiss-Prot),   A0A8I6A5H9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944031   ⟸   XM_039088103
- Peptide Label: isoform X8
- UniProtKB: A0A8I6A5H9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000090019   ⟸   ENSRNOT00000113595
Ensembl Acc Id: ENSRNOP00000083451   ⟸   ENSRNOT00000096354
Ensembl Acc Id: ENSRNOP00000087235   ⟸   ENSRNOT00000107426
RefSeq Acc Id: XP_063126439   ⟸   XM_063270369
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063126441   ⟸   XM_063270371
- Peptide Label: isoform X5
- UniProtKB: A0A8L2QL16 (UniProtKB/TrEMBL),   A6JS03 (UniProtKB/TrEMBL),   A0A8I6A5H9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126442   ⟸   XM_063270372
- Peptide Label: isoform X5
- UniProtKB: A0A8L2QL16 (UniProtKB/TrEMBL),   A6JS03 (UniProtKB/TrEMBL),   A0A8I6A5H9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126443   ⟸   XM_063270373
- Peptide Label: isoform X7
Protein Domains
LIM zinc-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XI07-F1-model_v2 AlphaFold Q5XI07 1-632 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698239
Promoter ID:EPDNEW_R8764
Type:initiation region
Name:Lpp_1
Description:LIM domain containing preferred translocation partner in lipoma
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01179,703,745 - 79,703,805EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310535 AgrOrtholog
BioCyc Gene G2FUF-20920 BioCyc
Ensembl Genes ENSRNOG00000031669 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000044279 ENTREZGENE
  ENSRNOT00000096354 ENTREZGENE
  ENSRNOT00000113595 ENTREZGENE
  ENSRNOT00000113595.1 UniProtKB/Swiss-Prot
Gene3D-CATH Cysteine Rich Protein UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7132481 IMAGE-MGC_LOAD
  IMAGE:7134282 IMAGE-MGC_LOAD
InterPro Znf_LIM UniProtKB/Swiss-Prot
KEGG Report rno:288010 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94415 IMAGE-MGC_LOAD
  MGC:95216 IMAGE-MGC_LOAD
NCBI Gene Lpp ENTREZGENE
PANTHER PTHR24207:SF0 UniProtKB/Swiss-Prot
  ZYX102 PROTEIN UniProtKB/Swiss-Prot
Pfam LIM UniProtKB/Swiss-Prot
PhenoGen Lpp PhenoGen
PROSITE LIM_DOMAIN_1 UniProtKB/Swiss-Prot
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000031669 RatGTEx
SMART LIM UniProtKB/Swiss-Prot
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot
UniProt A0A8I5ZVW3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A5H9 ENTREZGENE
  A0A8L2QL16 ENTREZGENE, UniProtKB/TrEMBL
  A6JS03 ENTREZGENE, UniProtKB/TrEMBL
  LPP_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2007-03-14 Lpp  LIM domain containing preferred translocation partner in lipoma  Lpp_predicted  LIM domain containing preferred translocation partner in lipoma (predicted)  Symbol and Name updated 1299863 APPROVED
2007-02-12 Lpp_predicted  LIM domain containing preferred translocation partner in lipoma (predicted)  LOC288010  similar to LIM domain containing preferred translocation partner in lipoma; LIM domain-containing preferred translocation partner in lipoma; Lipoma-preferred-partner gene  Data merged from RGD:1565437 737654 APPROVED
2006-02-09 LOC288010  similar to LIM domain containing preferred translocation partner in lipoma; LIM domain-containing preferred translocation partner in lipoma; Lipoma-preferred-partner gene      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Lpp_predicted  LIM domain containing preferred translocation partner in lipoma (predicted)      Symbol and Name status set to approved 70820 APPROVED