Lpp (LIM domain containing preferred translocation partner in lipoma) - Rat Genome Database

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Gene: Lpp (LIM domain containing preferred translocation partner in lipoma) Ictidomys tridecemlineatus
Analyze
Symbol: Lpp
Name: LIM domain containing preferred translocation partner in lipoma
RGD ID: 12670777
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN cell-cell adhesion (inferred); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); genetic disease (ortholog); juvenile rheumatoid arthritis (ortholog); FOUND IN cytosol (inferred); focal adhesion (inferred); stress fiber (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lipoma-preferred partner; LOC101967781
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602115,268,388 - 115,917,157 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365781,370,757 - 1,945,623 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365781,362,041 - 2,009,031 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Lpp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602115,268,388 - 115,917,157 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365781,370,757 - 1,945,623 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365781,362,041 - 2,009,031 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LPP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383188,153,021 - 188,890,671 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3188,153,284 - 188,890,671 (+)EnsemblGRCh38hg38GRCh38
GRCh373187,870,809 - 188,608,460 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363189,413,415 - 190,080,135 (+)NCBINCBI36Build 36hg18NCBI36
Build 343189,413,422 - 190,080,143NCBI
Celera3186,302,146 - 187,042,707 (+)NCBICelera
Cytogenetic Map3q27.3-q28NCBI
HuRef3185,276,702 - 186,012,895 (+)NCBIHuRef
CHM1_13187,834,800 - 188,571,334 (+)NCBICHM1_1
T2T-CHM13v2.03190,970,544 - 191,707,297 (+)NCBIT2T-CHM13v2.0
Lpp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391624,212,100 - 24,811,328 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1624,212,257 - 24,811,328 (+)EnsemblGRCm39 Ensembl
GRCm381624,393,350 - 24,992,578 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1624,393,507 - 24,992,578 (+)EnsemblGRCm38mm10GRCm38
MGSCv371624,393,436 - 24,992,664 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361624,308,839 - 24,896,379 (+)NCBIMGSCv36mm8
Celera1624,992,698 - 25,542,701 (+)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1616.17NCBI
Lpp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81189,292,060 - 89,933,973 (-)NCBIGRCr8
mRatBN7.21175,787,326 - 76,426,646 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1175,797,078 - 76,422,597 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1184,585,467 - 85,080,546 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01177,220,535 - 77,715,680 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01176,299,777 - 76,794,828 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01179,192,603 - 79,827,858 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1179,205,730 - 79,703,736 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01180,966,777 - 81,532,915 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41177,963,582 - 78,416,872 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1174,696,679 - 75,188,394 (-)NCBICelera
Cytogenetic Map11q23NCBI
Lpp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542019,014,398 - 19,478,472 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542019,014,398 - 19,634,102 (-)NCBIChiLan1.0ChiLan1.0
LPP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22186,022,456 - 186,760,585 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13186,023,356 - 186,765,299 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03185,179,432 - 185,916,477 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13193,738,521 - 194,474,541 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3193,991,530 - 194,462,641 (+)Ensemblpanpan1.1panPan2
LPP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13420,538,580 - 21,157,978 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3420,632,193 - 21,142,914 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3424,650,600 - 25,252,579 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03420,478,361 - 21,091,684 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3420,410,286 - 21,076,578 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13420,506,069 - 21,108,654 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03420,499,818 - 21,102,764 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03420,740,447 - 21,343,608 (+)NCBIUU_Cfam_GSD_1.0
LPP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13125,782,471 - 126,463,303 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113125,782,373 - 126,478,927 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LPP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11582,560,877 - 83,141,838 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1582,867,376 - 83,136,633 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604155,959,509 - 56,722,529 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lpp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473068,136,917 - 68,645,497 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473068,122,915 - 68,757,843 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000004789   ⟹   ENSSTOP00000004300
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365781,373,763 - 1,613,846 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000035512   ⟹   ENSSTOP00000027251
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365781,370,757 - 1,791,435 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000038061   ⟹   ENSSTOP00000028975
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365781,372,122 - 1,945,623 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000041766   ⟹   ENSSTOP00000025923
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365781,372,122 - 1,945,623 (-)Ensembl
RefSeq Acc Id: XM_005330981   ⟹   XP_005331038
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602115,268,388 - 115,917,157 (-)NCBI
SpeTri2.0NW_0049365781,362,041 - 2,009,031 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040270155   ⟹   XP_040126089
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602115,268,388 - 115,865,477 (-)NCBI
RefSeq Acc Id: XM_040270156   ⟹   XP_040126090
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602115,268,388 - 115,916,870 (-)NCBI
RefSeq Acc Id: XM_040270157   ⟹   XP_040126091
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602115,268,388 - 115,811,409 (-)NCBI
RefSeq Acc Id: XM_040270158   ⟹   XP_040126092
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602115,268,388 - 115,917,157 (-)NCBI
RefSeq Acc Id: XM_040270159   ⟹   XP_040126093
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602115,268,388 - 115,556,976 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005331038   ⟸   XM_005330981
- Peptide Label: isoform X1
- UniProtKB: A0A287D624 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040126092   ⟸   XM_040270158
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040126090   ⟸   XM_040270156
- Peptide Label: isoform X1
- UniProtKB: A0A287D624 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040126089   ⟸   XM_040270155
- Peptide Label: isoform X1
- UniProtKB: A0A287D624 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040126091   ⟸   XM_040270157
- Peptide Label: isoform X1
- UniProtKB: A0A287D624 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040126093   ⟸   XM_040270159
- Peptide Label: isoform X3
- UniProtKB: I3M4V8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000028975   ⟸   ENSSTOT00000038061
RefSeq Acc Id: ENSSTOP00000027251   ⟸   ENSSTOT00000035512
RefSeq Acc Id: ENSSTOP00000025923   ⟸   ENSSTOT00000041766
RefSeq Acc Id: ENSSTOP00000004300   ⟸   ENSSTOT00000004789
Protein Domains
LIM zinc-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004791 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004789.3 UniProtKB/TrEMBL
  ENSSTOT00000035512.1 UniProtKB/TrEMBL
  ENSSTOT00000038061.1 UniProtKB/TrEMBL
  ENSSTOT00000041766.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/TrEMBL
InterPro Znf_LIM UniProtKB/TrEMBL
NCBI Gene Lpp ENTREZGENE
PANTHER PTHR24207:SF0 UniProtKB/TrEMBL
  ZYX102 PROTEIN UniProtKB/TrEMBL
Pfam LIM UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A0A287D624 ENTREZGENE, UniProtKB/TrEMBL
  I3M4V8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-09 Lpp  LIM domain containing preferred translocation partner in lipoma  LOC101967781  LIM domain containing preferred translocation partner in lipoma  Symbol and/or name change 5135510 APPROVED
2021-03-26 LOC101967781  LIM domain containing preferred translocation partner in lipoma  Lpp  LIM domain containing preferred translocation partner in lipoma  Symbol and/or name change 5135510 APPROVED