Tmem177 (transmembrane protein 177) - Rat Genome Database

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Gene: Tmem177 (transmembrane protein 177) Rattus norvegicus
Analyze
Symbol: Tmem177
Name: transmembrane protein 177
RGD ID: 1310320
Description: Predicted to be located in mitochondrial inner membrane. Predicted to be active in membrane. Orthologous to human TMEM177 (transmembrane protein 177); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; gentamycin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC304735; MGC112654; RGD1310320; similar to hypothetical protein MGC10993
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81333,576,704 - 33,580,129 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1333,574,281 - 33,582,159 (-)EnsemblGRCr8
mRatBN7.21331,023,893 - 31,027,368 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1331,023,455 - 31,027,378 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1333,605,119 - 33,608,545 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01334,892,949 - 34,896,375 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01332,167,832 - 32,171,257 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01335,929,783 - 35,933,271 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1335,929,819 - 35,933,243 (-)Ensemblrn6Rnor6.0
Rnor_5.01341,042,437 - 41,045,862 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41332,688,858 - 32,692,283 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1330,915,783 - 30,919,208 (-)NCBICelera
RGSC_v3.11332,691,956 - 32,692,896 (-)NCBI
Cytogenetic Map13q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:29154948   PMID:34800366  


Genomics

Comparative Map Data
Tmem177
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81333,576,704 - 33,580,129 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1333,574,281 - 33,582,159 (-)EnsemblGRCr8
mRatBN7.21331,023,893 - 31,027,368 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1331,023,455 - 31,027,378 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1333,605,119 - 33,608,545 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01334,892,949 - 34,896,375 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01332,167,832 - 32,171,257 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01335,929,783 - 35,933,271 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1335,929,819 - 35,933,243 (-)Ensemblrn6Rnor6.0
Rnor_5.01341,042,437 - 41,045,862 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41332,688,858 - 32,692,283 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1330,915,783 - 30,919,208 (-)NCBICelera
RGSC_v3.11332,691,956 - 32,692,896 (-)NCBI
Cytogenetic Map13q11NCBI
TMEM177
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382119,679,201 - 119,723,618 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2119,679,137 - 119,686,507 (+)Ensemblhg38GRCh38
GRCh372120,436,777 - 120,481,194 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362120,153,213 - 120,156,164 (+)NCBIBuild 36Build 36hg18NCBI36
Celera2113,762,466 - 113,765,417 (+)NCBICelera
Cytogenetic Map2q14.2NCBI
HuRef2112,761,605 - 112,764,556 (+)NCBIHuRef
CHM1_12120,439,910 - 120,442,861 (+)NCBICHM1_1
T2T-CHM13v2.02120,112,838 - 120,157,662 (+)NCBIT2T-CHM13v2.0
Tmem177
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391119,835,620 - 119,840,913 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1119,835,620 - 119,840,938 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381119,907,890 - 119,913,183 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1119,907,890 - 119,913,208 (-)Ensemblmm10GRCm38
MGSCv371121,804,467 - 121,809,745 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361121,735,436 - 121,740,714 (-)NCBIMGSCv36mm8
Celera1122,567,480 - 122,572,758 (-)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.53NCBI
Tmem177
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545910,065,837 - 10,192,821 (-)Ensembl
ChiLan1.0NW_00495545910,068,022 - 10,070,911 (-)NCBIChiLan1.0ChiLan1.0
TMEM177
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21321,679,354 - 21,682,357 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B21,694,325 - 21,697,328 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B6,612,969 - 6,623,704 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B120,190,439 - 120,193,418 (+)NCBIPanPan1.1PanPan1.1panPan2
TMEM177
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11930,374,685 - 30,377,755 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1930,371,712 - 30,375,933 (-)EnsemblcanFam3CanFam3.1
Tmem177
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530390,896,831 - 90,902,910 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646950,714,910 - 50,720,431 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493646950,716,622 - 50,720,467 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM177
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1531,578,224 - 31,582,437 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11531,578,049 - 31,582,472 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21536,158,310 - 36,169,708 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM177
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11010,633,105 - 10,636,106 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1010,633,435 - 10,634,370 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606112,052,532 - 12,055,555 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem177
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473225,394,688 - 25,400,164 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473225,396,929 - 25,397,864 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tmem177
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11012,477,038 - 12,480,549 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tmem177
48 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:48
Interacting mature miRNAs:53
Transcripts:ENSRNOT00000039074
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134785618Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131186625456866254Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131228551734884386Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132485392569853925Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131244842147969993Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131746828262468282Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)13143736554Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131228551734884386Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13600200847359539Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)132433543255601132Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131244842148744906Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132624480871244808Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)13308875548088755Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13600200837088115Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132624480871244808Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131771133662711336Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13134785618Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131186625456866254Rat

Markers in Region
RH130142  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21331,023,948 - 31,024,103 (+)MAPPERmRatBN7.2
Rnor_6.01335,929,839 - 35,929,993NCBIRnor6.0
Rnor_5.01341,042,458 - 41,042,612UniSTSRnor5.0
RGSC_v3.41332,688,879 - 32,689,033UniSTSRGSC3.4
Celera1330,915,804 - 30,915,958UniSTS
Cytogenetic Map13q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 66 161 91 90 59 92 59 6 355 191 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000039074   ⟹   ENSRNOP00000036312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1333,575,913 - 33,580,324 (-)Ensembl
mRatBN7.2 Ensembl1331,023,917 - 31,027,378 (-)Ensembl
Rnor_6.0 Ensembl1335,929,819 - 35,933,243 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102460   ⟹   ENSRNOP00000094878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1333,574,615 - 33,580,324 (-)Ensembl
mRatBN7.2 Ensembl1331,023,932 - 31,027,323 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118103   ⟹   ENSRNOP00000087342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1333,576,041 - 33,582,159 (-)Ensembl
mRatBN7.2 Ensembl1331,023,455 - 31,027,378 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000154463   ⟹   ENSRNOP00000110919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1333,574,281 - 33,580,157 (-)Ensembl
RefSeq Acc Id: NM_001037776   ⟹   NP_001032865
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,576,704 - 33,580,129 (-)NCBI
mRatBN7.21331,023,928 - 31,027,353 (-)NCBI
Rnor_6.01335,929,818 - 35,933,243 (-)NCBI
Rnor_5.01341,042,437 - 41,045,862 (-)NCBI
RGSC_v3.41332,688,858 - 32,692,283 (-)RGD
Celera1330,915,783 - 30,919,208 (-)RGD
Sequence:
RefSeq Acc Id: XM_006249664   ⟹   XP_006249726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,576,708 - 33,580,105 (-)NCBI
mRatBN7.21331,023,893 - 31,027,290 (-)NCBI
Rnor_6.01335,929,783 - 35,933,207 (-)NCBI
Rnor_5.01341,042,437 - 41,045,862 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063272237   ⟹   XP_063128307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,576,708 - 33,579,714 (-)NCBI
RefSeq Acc Id: NP_001032865   ⟸   NM_001037776
- UniProtKB: Q4KM93 (UniProtKB/Swiss-Prot),   A6K7X9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249726   ⟸   XM_006249664
- Peptide Label: isoform X1
- UniProtKB: Q4KM93 (UniProtKB/Swiss-Prot),   A6K7X9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000036312   ⟸   ENSRNOT00000039074
Ensembl Acc Id: ENSRNOP00000094878   ⟸   ENSRNOT00000102460
Ensembl Acc Id: ENSRNOP00000087342   ⟸   ENSRNOT00000118103
RefSeq Acc Id: XP_063128307   ⟸   XM_063272237
- Peptide Label: isoform X1
- UniProtKB: Q4KM93 (UniProtKB/Swiss-Prot),   A6K7X9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000110919   ⟸   ENSRNOT00000154463

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4KM93-F1-model_v2 AlphaFold Q4KM93 1-311 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698765
Promoter ID:EPDNEW_R9289
Type:single initiation site
Name:Tmem177_1
Description:transmembrane protein 177
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01335,933,251 - 35,933,311EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310320 AgrOrtholog
BioCyc Gene G2FUF-18512 BioCyc
Ensembl Genes ENSRNOG00000025484 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000039074.4 UniProtKB/Swiss-Prot
  ENSRNOT00000102460.1 UniProtKB/Swiss-Prot
  ENSRNOT00000118103.1 UniProtKB/Swiss-Prot
  ENSRNOT00000154463 ENTREZGENE
IMAGE_CLONE IMAGE:7386020 IMAGE-MGC_LOAD
InterPro TMEM177 UniProtKB/Swiss-Prot
KEGG Report rno:304735 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112654 IMAGE-MGC_LOAD
NCBI Gene 304735 ENTREZGENE
PANTHER PTHR21824 UniProtKB/Swiss-Prot
  TRANSMEMBRANE PROTEIN 177 UniProtKB/Swiss-Prot
PhenoGen Tmem177 PhenoGen
RatGTEx ENSRNOG00000025484 RatGTEx
UniProt A6K7X9 ENTREZGENE, UniProtKB/TrEMBL
  Q4KM93 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-27 Tmem177  transmembrane protein 177  RGD1310320  similar to hypothetical protein MGC10993  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1310320  similar to hypothetical protein MGC10993  RGD1310320_predicted  similar to hypothetical protein MGC10993 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310320_predicted  similar to hypothetical protein MGC10993 (predicted)  LOC304735_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC304735_predicted  similar to hypothetical protein MGC10993 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL