TMEM177 (transmembrane protein 177) - Rat Genome Database

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Gene: TMEM177 (transmembrane protein 177) Sus scrofa
Analyze
Symbol: TMEM177
Name: transmembrane protein 177
RGD ID: 14014101
Description: FOUND IN mitochondrial inner membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1531,578,224 - 31,582,437 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11531,578,049 - 31,582,472 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21536,158,310 - 36,169,708 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
TMEM177
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1531,578,224 - 31,582,437 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11531,578,049 - 31,582,472 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21536,158,310 - 36,169,708 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM177
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382119,679,201 - 119,723,618 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2119,679,167 - 119,686,507 (+)EnsemblGRCh38hg38GRCh38
GRCh372120,436,777 - 120,481,194 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362120,153,213 - 120,156,164 (+)NCBINCBI36Build 36hg18NCBI36
Celera2113,762,466 - 113,765,417 (+)NCBICelera
Cytogenetic Map2q14.2NCBI
HuRef2112,761,605 - 112,764,556 (+)NCBIHuRef
CHM1_12120,439,910 - 120,442,861 (+)NCBICHM1_1
T2T-CHM13v2.02120,112,838 - 120,157,662 (+)NCBIT2T-CHM13v2.0
Tmem177
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391119,835,620 - 119,840,913 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1119,835,620 - 119,840,938 (-)EnsemblGRCm39 Ensembl
GRCm381119,907,890 - 119,913,183 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1119,907,890 - 119,913,208 (-)EnsemblGRCm38mm10GRCm38
MGSCv371121,804,467 - 121,809,745 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361121,735,436 - 121,740,714 (-)NCBIMGSCv36mm8
Celera1122,567,480 - 122,572,758 (-)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.53NCBI
Tmem177
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81333,576,704 - 33,580,129 (-)NCBIGRCr8
mRatBN7.21331,023,893 - 31,027,368 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1331,023,455 - 31,027,378 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1333,605,119 - 33,608,545 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01334,892,949 - 34,896,375 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01332,167,832 - 32,171,257 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01335,929,783 - 35,933,271 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1335,929,819 - 35,933,243 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01341,042,437 - 41,045,862 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41332,688,858 - 32,692,283 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11332,691,956 - 32,692,896 (-)NCBI
Celera1330,915,783 - 30,919,208 (-)NCBICelera
Cytogenetic Map13q11NCBI
Tmem177
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545910,065,837 - 10,192,821 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545910,068,022 - 10,070,911 (-)NCBIChiLan1.0ChiLan1.0
TMEM177
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21321,679,354 - 21,682,357 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B21,694,325 - 21,697,328 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B6,612,969 - 6,623,704 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B120,190,439 - 120,193,418 (+)NCBIpanpan1.1PanPan1.1panPan2
TMEM177
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11930,374,685 - 30,377,755 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1930,371,712 - 30,375,933 (-)EnsemblCanFam3.1canFam3CanFam3.1
Tmem177
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530390,896,831 - 90,902,910 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646950,714,910 - 50,720,431 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646950,716,622 - 50,720,467 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM177
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11010,633,105 - 10,636,106 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1010,633,435 - 10,634,370 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606112,052,532 - 12,055,555 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem177
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473225,394,688 - 25,400,164 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473225,396,929 - 25,397,864 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM177
221 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 8 4 3 4 2 23 2 3 1
Below cutoff 2 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000057476   ⟹   ENSSSCP00000039779
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1531,578,224 - 31,582,437 (-)Ensembl
RefSeq Acc Id: XM_003133310   ⟹   XP_003133358
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11531,578,049 - 31,582,472 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003133358   ⟸   XM_003133310
- UniProtKB: F1RXW5 (UniProtKB/TrEMBL),   A0A8D1KAB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000039779   ⟸   ENSSSCT00000057476


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015742 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025056843 UniProtKB/TrEMBL
  ENSSSCG00035001747 UniProtKB/TrEMBL
  ENSSSCG00040038637 UniProtKB/TrEMBL
  ENSSSCG00045008896 UniProtKB/TrEMBL
  ENSSSCG00050054805 UniProtKB/TrEMBL
  ENSSSCG00055008184 UniProtKB/TrEMBL
  ENSSSCG00060013587 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000057476 ENTREZGENE
  ENSSSCT00000057476.3 UniProtKB/TrEMBL
  ENSSSCT00025077754.1 UniProtKB/TrEMBL
  ENSSSCT00035002167.1 UniProtKB/TrEMBL
  ENSSSCT00040051654.1 UniProtKB/TrEMBL
  ENSSSCT00045015041.1 UniProtKB/TrEMBL
  ENSSSCT00050074750.1 UniProtKB/TrEMBL
  ENSSSCT00055015948.1 UniProtKB/TrEMBL
  ENSSSCT00060017903.1 UniProtKB/TrEMBL
InterPro TMEM177 UniProtKB/TrEMBL
KEGG Report ssc:100523095 UniProtKB/TrEMBL
NCBI Gene TMEM177 ENTREZGENE
PANTHER PTHR21824 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 177 UniProtKB/TrEMBL
UniProt A0A8D1H600_PIG UniProtKB/TrEMBL
  A0A8D1KAB7 ENTREZGENE, UniProtKB/TrEMBL
  F1RXW5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:96166 ENTREZGENE