Tmem177 (transmembrane protein 177)

Gene: Tmem177 (transmembrane protein 177) Ictidomys tridecemlineatus

Analyze

Symbol:

Tmem177

Name:

transmembrane protein 177

RGD ID:

12707188

Description:

ASSOCIATED WITH genetic disease (ortholog); FOUND IN mitochondrial inner membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	90,896,831 - 90,902,910 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	50,714,910 - 50,720,431 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	50,716,622 - 50,720,467 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

mitochondrial inner membrane (IEA)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

Tmem177
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	90,896,831 - 90,902,910 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	50,714,910 - 50,720,431 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	50,716,622 - 50,720,467 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM177
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	119,679,201 - 119,723,618 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	119,679,167 - 119,686,507 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	120,436,777 - 120,481,194 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	120,153,213 - 120,156,164 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	113,762,466 - 113,765,417 (+)	NCBI		Celera
Cytogenetic Map	2	q14.2	NCBI
HuRef	2	112,761,605 - 112,764,556 (+)	NCBI		HuRef
CHM1_1	2	120,439,910 - 120,442,861 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	120,112,838 - 120,157,662 (+)	NCBI		T2T-CHM13v2.0

Tmem177
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	119,835,620 - 119,840,913 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	119,835,620 - 119,840,938 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	119,907,890 - 119,913,183 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	119,907,890 - 119,913,208 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	121,804,467 - 121,809,745 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	121,735,436 - 121,740,714 (-)	NCBI		MGSCv36	mm8
Celera	1	122,567,480 - 122,572,758 (-)	NCBI		Celera
Cytogenetic Map	1	E2.3	NCBI
cM Map	1	52.53	NCBI

Tmem177
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	33,576,704 - 33,580,129 (-)	NCBI		GRCr8
mRatBN7.2	13	31,023,893 - 31,027,368 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	31,023,455 - 31,027,378 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	33,605,119 - 33,608,545 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	34,892,949 - 34,896,375 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	32,167,832 - 32,171,257 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	35,929,783 - 35,933,271 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	35,929,819 - 35,933,243 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	41,042,437 - 41,045,862 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	32,688,858 - 32,692,283 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	32,691,956 - 32,692,896 (-)	NCBI
Celera	13	30,915,783 - 30,919,208 (-)	NCBI		Celera
Cytogenetic Map	13	q11	NCBI

Tmem177
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955459	10,065,837 - 10,192,821 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955459	10,068,022 - 10,070,911 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM177
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	21,679,354 - 21,682,357 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	21,694,325 - 21,697,328 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	6,612,969 - 6,623,704 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	120,190,439 - 120,193,418 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

TMEM177
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	30,374,685 - 30,377,755 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	30,371,712 - 30,375,933 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1

TMEM177
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	31,578,224 - 31,582,437 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	31,578,049 - 31,582,472 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	36,158,310 - 36,169,708 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM177
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	10,633,105 - 10,636,106 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	10,633,435 - 10,634,370 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666061	12,052,532 - 12,055,555 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem177
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	25,394,688 - 25,400,164 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624732	25,396,929 - 25,397,864 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005315914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021722043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000034513 ⟹ ENSSTOP00000031300

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936469	50,714,910 - 50,720,431 (-)	Ensembl

RefSeq Acc Id:

XM_005315914 ⟹ XP_005315971

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	90,896,836 - 90,902,910 (+)	NCBI
SpeTri2.0	NW_004936469	50,716,622 - 50,720,467 (-)	NCBI

Sequence:

show sequence

GCGTGCTTTGCGGTCGCCCCCGCAGGGCCCCGCGCACGTGTCGCCGCGTACTGGGCAGCCGCAG
AGCAGCCAGGTTGTCAGCAGTGGGAGCACTCATGGCTGGTCCCCTGTGGCGGGTCTCAGCCTTC
ATACAGAGACACAGGACAGCCCTTTTAGTGGGTTCCTGCACAGGCCTGTTTGGAGCTCAAATCT
CGTACCACCTCTTCCCGGATCCCGTGGTCCAGTGGCTTTACCAGTACTGGCCCCAGGGCCAACC
GGCCCCACTCTCCTCAGAACTACAAAGCCTCTTCCAAGAGGTCCTGCAGGATATGGGCGTCCCT
TCTGGCCACTGCTACAAGCCCTTCACCACCTTTACCTTCCAGCCTGTGAGTGCCGGCTTCCCAA
GACTCCCTGCCGGGGCTGTCATAGGCATCCCTGCCAGCTTCCTTGGTGGCCCAGTAACCAACAC
TGATCATCCTGTGGTCGTACATGGGCAAAGAGTAGACTGGCAGACCCCAGCAGGCACCCGTCTA
AGAGATGCCCTGACCCTCTCCCGTGACGCCCAGAAGTTTGCCTTGGCCAGAGAGGTGGTATACC
TGGAGACTAGTGCAGCTGCCCTGCAGGCCCTGCCAGCCCCAGCTTGCCTGGCAGGAACCTGGGC
ACTGAGTGTGGGTGCCAAGCATGCACTAGGACTCTATGGAGGCCCCATGAACATACGAGCTGCC
TTCAACTTGGTGGCAGCAGTGGCAGGCTTCGTGGCCTATGCCTTCTCCGCAGACTCTCTTACTC
ATGCCCTGGAAGGTTGGCTGGACCGCCGCACCGCCTCCCTGTCTACAGCCTACGCCCGAGGTGG
AGTGGAATTCTATGAGAAGGTTCTGTCAGGCAACCTGGCCCTGCGCAGTCTCTTGGGCAGACGC
GGGGAGAAGCTGTATACACCCAGTGGGAACATTGTCCCCAGACACTGGTTCCGCATCAAGCATT
TACCCTACACAACCCGCCTGGACTCTGTACTGCAGATATGGAGGGTAGCACCCAACCCAGGCCG
CTCCTGAGGTGCTCATCACCAGGACAGTTCCAATTCATGCAAATACCACTCTGGCATTGTCTGG
GGGAATCCCTTGGGACCTCTGGACCCACACACCACAGTCAGAAAAATTATAGGCTTTGGAGTTA
AATATCCTAGATTCTGTCTTCTCCTACCACTTATGAACTCAGGGACCTTGGGCAAGCCCCCTTT
ATGAATCTGAGCCTTAGTTTTCTCAACTATAATGTGGAGAGGATATAAACTACCTCACAGGATT
ATAGAGTTATGTGAAATCATGAATAAGAGGACCTGGCAGAAAGAGTACCATGAATAAACAGAAT
ATTGCTCCTCCTTTA

hide sequence

RefSeq Acc Id:

XM_021722043 ⟹ XP_021577718

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	90,896,832 - 90,902,910 (+)	NCBI
SpeTri2.0	NW_004936469	50,716,622 - 50,720,467 (-)	NCBI

Sequence:

show sequence

GCGTGCTTTGCGGTCGCCCCCGCAGGGCCCCGCGCACGTGTCGCCGCGTACTGGGCAGCCGCAG
AGCAGGTTGTCAGCAGTGGGAGCACTCATGGCTGGTCCCCTGTGGCGGGTCTCAGCCTTCATAC
AGAGACACAGGACAGCCCTTTTAGTGGGTTCCTGCACAGGCCTGTTTGGAGCTCAAATCTCGTA
CCACCTCTTCCCGGATCCCGTGGTCCAGTGGCTTTACCAGTACTGGCCCCAGGGCCAACCGGCC
CCACTCTCCTCAGAACTACAAAGCCTCTTCCAAGAGGTCCTGCAGGATATGGGCGTCCCTTCTG
GCCACTGCTACAAGCCCTTCACCACCTTTACCTTCCAGCCTGTGAGTGCCGGCTTCCCAAGACT
CCCTGCCGGGGCTGTCATAGGCATCCCTGCCAGCTTCCTTGGTGGCCCAGTAACCAACACTGAT
CATCCTGTGGTCGTACATGGGCAAAGAGTAGACTGGCAGACCCCAGCAGGCACCCGTCTAAGAG
ATGCCCTGACCCTCTCCCGTGACGCCCAGAAGTTTGCCTTGGCCAGAGAGGTGGTATACCTGGA
GACTAGTGCAGCTGCCCTGCAGGCCCTGCCAGCCCCAGCTTGCCTGGCAGGAACCTGGGCACTG
AGTGTGGGTGCCAAGCATGCACTAGGACTCTATGGAGGCCCCATGAACATACGAGCTGCCTTCA
ACTTGGTGGCAGCAGTGGCAGGCTTCGTGGCCTATGCCTTCTCCGCAGACTCTCTTACTCATGC
CCTGGAAGGTTGGCTGGACCGCCGCACCGCCTCCCTGTCTACAGCCTACGCCCGAGGTGGAGTG
GAATTCTATGAGAAGGTTCTGTCAGGCAACCTGGCCCTGCGCAGTCTCTTGGGCAGACGCGGGG
AGAAGCTGTATACACCCAGTGGGAACATTGTCCCCAGACACTGGTTCCGCATCAAGCATTTACC
CTACACAACCCGCCTGGACTCTGTACTGCAGATATGGAGGGTAGCACCCAACCCAGGCCGCTCC
TGAGGTGCTCATCACCAGGACAGTTCCAATTCATGCAAATACCACTCTGGCATTGTCTGGGGGA
ATCCCTTGGGACCTCTGGACCCACACACCACAGTCAGAAAAATTATAGGCTTTGGAGTTAAATA
TCCTAGATTCTGTCTTCTCCTACCACTTATGAACTCAGGGACCTTGGGCAAGCCCCCTTTATGA
ATCTGAGCCTTAGTTTTCTCAACTATAATGTGGAGAGGATATAAACTACCTCACAGGATTATAG
AGTTATGTGAAATCATGAATAAGAGGACCTGGCAGAAAGAGTACCATGAATAAACAGAATATTG
CTCCTCCTTTA

hide sequence

RefSeq Acc Id:

XM_040294116 ⟹ XP_040150050

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	90,897,359 - 90,902,910 (+)	NCBI

RefSeq Acc Id:

XM_040294117 ⟹ XP_040150051

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	90,897,359 - 90,902,910 (+)	NCBI

RefSeq Acc Id:

XM_040294118 ⟹ XP_040150052

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	90,896,831 - 90,902,910 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005315971	(Get FASTA)	NCBI Sequence Viewer
	XP_021577718	(Get FASTA)	NCBI Sequence Viewer
	XP_040150050	(Get FASTA)	NCBI Sequence Viewer
	XP_040150051	(Get FASTA)	NCBI Sequence Viewer
	XP_040150052	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000031300.1
GenBank Protein	KAG3274250	(Get FASTA)	NCBI Sequence Viewer
	KAG3274251	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005315971 ⟸ XM_005315914
- Peptide Label:	isoform X2
- UniProtKB:	A0A287DCK3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGPLWRVSAFIQRHRTALLVGSCTGLFGAQISYHLFPDPVVQWLYQYWPQGQPAPLSSELQSL FQEVLQDMGVPSGHCYKPFTTFTFQPVSAGFPRLPAGAVIGIPASFLGGPVTNTDHPVVVHGQR VDWQTPAGTRLRDALTLSRDAQKFALAREVVYLETSAAALQALPAPACLAGTWALSVGAKHALG LYGGPMNIRAAFNLVAAVAGFVAYAFSADSLTHALEGWLDRRTASLSTAYARGGVEFYEKVLSG NLALRSLLGRRGEKLYTPSGNIVPRHWFRIKHLPYTTRLDSVLQIWRVAPNPGRS hide sequence

RefSeq Acc Id:	XP_021577718 ⟸ XM_021722043
- Peptide Label:	isoform X2
- UniProtKB:	A0A287DCK3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGPLWRVSAFIQRHRTALLVGSCTGLFGAQISYHLFPDPVVQWLYQYWPQGQPAPLSSELQSL FQEVLQDMGVPSGHCYKPFTTFTFQPVSAGFPRLPAGAVIGIPASFLGGPVTNTDHPVVVHGQR VDWQTPAGTRLRDALTLSRDAQKFALAREVVYLETSAAALQALPAPACLAGTWALSVGAKHALG LYGGPMNIRAAFNLVAAVAGFVAYAFSADSLTHALEGWLDRRTASLSTAYARGGVEFYEKVLSG NLALRSLLGRRGEKLYTPSGNIVPRHWFRIKHLPYTTRLDSVLQIWRVAPNPGRS hide sequence

RefSeq Acc Id:	XP_040150052 ⟸ XM_040294118
- Peptide Label:	isoform X2
- UniProtKB:	A0A287DCK3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040150051 ⟸ XM_040294117
- Peptide Label:	isoform X2
- UniProtKB:	A0A287DCK3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040150050 ⟸ XM_040294116
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSSTOP00000031300 ⟸ ENSSTOT00000034513

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000029730	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000034513.1	UniProtKB/TrEMBL
InterPro	TMEM177	UniProtKB/TrEMBL
NCBI Gene	Tmem177	ENTREZGENE
PANTHER	PTHR21824	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 177	UniProtKB/TrEMBL
UniProt	A0A287DCK3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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