Shm2_m QTL Report (Mus musculus) - Rat Genome Database

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QTL Registration

QTL: Shm2_m (sperm head morphology 2 (mouse)) Mus musculus

Symbol: Shm2_m
Name: sperm head morphology 2 (mouse)
RGD ID: 12050091
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm394136,876,000 - 138,342,753MOUSEQTLGRCm39
GRCm384137,148,689 - 138,615,442MOUSEQTLGRCm38
cM Map4syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



References

References - curated
# Reference Title Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
Additional References at PubMed
PMID:22438012  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1319053Ddostdolichyl-di-phosphooligosaccharide-protein glycotransferase4138032049138039930Mouse
1314002Pink1PTEN induced putative kinase 14138040718138053631Mouse
401850631AB041806hypothetical protein, MNCb-24574138122361138125203Mouse
1322793Eif4g3eukaryotic translation initiation factor 4 gamma, 34137719090137934397Mouse
1552140Ece1endothelin converting enzyme 14137589548137692540Mouse
731885Alplalkaline phosphatase, liver/bone/kidney4137469042137523695Mouse
1551379Rap1gapRap1 GTPase-activating protein4137391549137457172Mouse
1558537Kif17kinesin family member 174137989562138029284Mouse
1609307Rap1gaposRAP1 GTPase activating protein, opposite strand4137424285137433917Mouse
16088052810405F17RikRIKEN cDNA 2810405F17 gene4137114577137115732Mouse
1558001Hspg2perlecan (heparan sulfate proteoglycan 2)4137196062137297941Mouse
16102821700095J12RikRIKEN cDNA 1700095J12 gene4137864891137865829Mouse
1614375Camk2n1calcium/calmodulin-dependent protein kinase II inhibitor 14138182459138187437Mouse
1320561Mul1mitochondrial ubiquitin ligase activator of NFKB 14138160239138169576Mouse
1618152Sh2d5SH2 domain containing 54137977722137988279Mouse
730977Cdc42cell division cycle 424137047011137085007Mouse
1332167Hp1bp3heterochromatin protein 1, binding protein 34137943781137971994Mouse
1621150Ldlrad2low density lipoprotein receptor class A domain containing 24137298185137309429Mouse
1322378Cdacytidine deaminase4138065839138095623Mouse
733868Wnt4wingless-type MMTV integration site family, member 44137004946137026812Mouse
1551945Usp48ubiquitin specific peptidase 484137321079137385842Mouse
16207991700013G24RikRIKEN cDNA 1700013G24 gene4137180607137182772Mouse
1317235Cela3bchymotrypsin-like elastase family, member 3B4137148319137157831Mouse
1332265Vwa5b1von Willebrand factor A domain containing 5B14138291540138363303Mouse
2295391Rpl31-ps10ribosomal protein L31, pseudogene 104137122540137123020Mouse
2295775Cela3achymotrypsin-like elastase family, member 3A4137128865137137102Mouse
2294560Rpl38-ps1ribosomal protein L38, pseudogene 14138153039138153353Mouse
2294561Fam43bfamily with sequence similarity 43, member B4138121403138123769Mouse
5145193Gm13003predicted gene 130034136886393136892377Mouse
5146215Gm13012predicted gene 130124137606695137611267Mouse
5147305Gm13005predicted gene 130054136946303136947752Mouse
9623540Gm32079predicted gene, 320794137530404137539121Mouse
9607127Gm32549predicted gene, 325494138223790138255825Mouse
9612262Gm31820predicted gene, 318204136911392136980072Mouse
9668327Mir7019microRNA 70194138043443138043511Mouse
9646678Mir7018microRNA 70184137265597137265681Mouse
9659140Mir6399microRNA 63994137890520137890603Mouse
10002672Gm13010predicted gene 130104137163892137194441Mouse
12797151Gm46872predicted gene, 468724136898608136909153Mouse
15019324Gm52681predicted gene, 526814137114456137118367Mouse
15019496Gm52682predicted gene, 526824137447271137449141Mouse
15019805Gm52683predicted gene, 526834137632688137635924Mouse
39130679Gm54263predicted gene, 542634137383742137392117Mouse
39129270Gm54278predicted gene, 542784137988332137989815Mouse
163703653LOC128925125CapStarr-seq enhancer MGSCv37_chr4:137524336-1375245194137695732137695915Mouse
163667502LOC128925124CapStarr-seq enhancer MGSCv37_chr4:137411929-1374121124137583325137583508Mouse
163666120LOC128925122CapStarr-seq enhancer MGSCv37_chr4:137149587-1371496964137320983137321092Mouse
163710166LOC128925123CapStarr-seq enhancer MGSCv37_chr4:137150478-1371506614137321874137322057Mouse
329962586LOC131340418STARR-seq mESC enhancer starr_117994138041681138042906Mouse
329962261LOC131340420STARR-seq mESC enhancer starr_118054138176048138177573Mouse
329963916LOC131340419STARR-seq mESC enhancer starr_118034138170471138173624Mouse
329962297LOC131340416STARR-seq mESC enhancer starr_117974137629202137631315Mouse
329963072LOC131340410STARR-seq mESC enhancer starr_117764137114986137116642Mouse
329966368LOC131340422STARR-seq mESC enhancer starr_118104138305239138306732Mouse
329969584LOC131340415STARR-seq mESC enhancer starr_117954137527877137529480Mouse
329967302LOC131340412STARR-seq mESC enhancer starr_117804137197023137199771Mouse
329968468LOC131340414STARR-seq mESC enhancer starr_117934137504759137506574Mouse
329969480LOC131340411STARR-seq mESC enhancer starr_117784137175227137178284Mouse
329967563LOC131340421STARR-seq mESC enhancer starr_118064138184368138185685Mouse
329968754LOC131340417STARR-seq mESC enhancer starr_117984137732672137734532Mouse
329968414LOC131340413STARR-seq mESC enhancer starr_117884137323862137326946Mouse
401833993LOC132410398STARR-positive B cell enhancer mm9_chr4:137024403-1370247044137195799137196100Mouse
401833488LOC132410407STARR-positive B cell enhancer ABC_E102704138046889138047189Mouse
401832479LOC132410405STARR-positive B cell enhancer ABC_E80024138010249138010550Mouse
401832833LOC132410408STARR-positive B cell enhancer ABC_E80034138161729138162030Mouse
401832735LOC132410400STARR-positive B cell enhancer ABC_E46914137515877137516178Mouse
401836092LOC132410396STARR-positive B cell enhancer ABC_E102684137083838137084138Mouse
401839567LOC132410401STARR-positive B cell enhancer ABC_E62404137593591137593892Mouse
401840398LOC132410402STARR-positive B cell enhancer mm9_chr4:137508798-1375090994137680194137680495Mouse
401838348LOC132410404STARR-positive B cell enhancer ABC_E62424137795970137796271Mouse
401837660LOC132410403STARR-positive B cell enhancer mm9_chr4:137549212-1375495134137720608137720909Mouse
401838020LOC132410399STARR-positive B cell enhancer ABC_E46904137229477137229778Mouse
401838468LOC132410406STARR-positive B cell enhancer ABC_E46924138031755138032056Mouse
401840689LOC132410397STARR-positive B cell enhancer ABC_E16614137084921137085222Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4141154Nba1_mNew Zealand Black autoimmunity 1 (mouse)Not determined131650724140879275Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
4142082Psds2_mpsoriasis-like skin disease severity 2 (mouse)Not determined4133154678137617995Mouse
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
4141779Ssrq8_mstress response QTL 8 (mouse)Not determined136876000137617995Mouse
12050091Shm2_msperm head morphology 2 (mouse)4136876000138342753Mouse
1357534Cinda3_mcytokine induced activation 3 (mouse)Not determined4137617848142289472Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137617848151654550Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137674005150676858Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:5816275 MouseQtl