Th (tyrosine hydroxylase) - Rat Genome Database

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Gene: Th (tyrosine hydroxylase) Chinchilla lanigera
Analyze
Symbol: Th
Name: tyrosine hydroxylase
RGD ID: 8835217
Description: ENCODES a protein that exhibits amino acid binding (ortholog); dopamine binding (ortholog); enzyme binding (ortholog); INVOLVED IN aminergic neurotransmitter loading into synaptic vesicle (ortholog); animal organ morphogenesis (ortholog); catecholamine biosynthetic process (ortholog); PARTICIPATES IN aromatic L-amino acid decarboxylase deficiency pathway; catecholamine biosynthetic pathway; dopamine biosynthetic pathway; ASSOCIATED WITH brain disease (ortholog); Brain Injuries (ortholog); brain ischemia (ortholog); FOUND IN neuron projection terminus; perikaryon; axon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tyrosine 3-monooxygenase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542213,943,552 - 13,951,137 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542213,943,590 - 13,951,102 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
brain disease  (ISO)
Brain Injuries  (ISO)
brain ischemia  (ISO)
Catalepsy  (ISO)
congestive heart failure  (ISO)
Contusions  (ISO)
delta beta-thalassemia  (ISO)
depressive disorder  (ISO)
developmental and epileptic encephalopathy  (ISO)
Drug-Induced Dyskinesia  (ISO)
dystonia  (ISO)
dystonia 5  (ISO)
early infantile epileptic encephalopathy  (ISO)
epilepsy  (ISO)
essential hypertension  (ISO)
Experimental Diabetes Mellitus  (ISO)
Experimental Liver Cirrhosis  (ISO)
generalized dystonia  (ISO)
genetic disease  (ISO)
heart disease  (ISO)
hepatocellular carcinoma  (ISO)
Hyperkinesis  (ISO)
Hyperproinsulinemia  (ISO)
hyperprolactinemia  (ISO)
hypertension  (ISO)
hypoglycemia  (ISO)
Hypoinsulinemia  (ISO)
immunodeficiency 39  (ISO)
intellectual disability  (ISO)
learning disability  (ISO)
Lewy body dementia  (ISO)
Machado-Joseph disease  (ISO)
maturity-onset diabetes of the young  (ISO)
maturity-onset diabetes of the young type 1  (ISO)
maturity-onset diabetes of the young type 10  (ISO)
middle cerebral artery infarction  (ISO)
myocardial infarction  (ISO)
neonatal diabetes  (ISO)
Nerve Degeneration  (ISO)
neuroblastoma  (ISO)
neuronal ceroid lipofuscinosis  (ISO)
obesity  (ISO)
Parkinson's disease  (ISO)
Parkinsonism  (ISO)
Permanent Neonatal Diabetes Mellitus 4  (ISO)
pheochromocytoma  (ISO)
polycystic ovary syndrome  (ISO)
portal hypertension  (ISO)
Reperfusion Injury  (ISO)
schizophrenia  (ISO)
Segawa Syndrome, Autosomal Recessive  (ISO)
transient neonatal diabetes mellitus  (ISO)
type 1 diabetes mellitus  (ISO)
type 1 diabetes mellitus 2  (ISO)
type 2 diabetes mellitus  (ISO)
Type 2 Diabetes Mellitus 1  (ISO)
uremia  (ISO)
withdrawal disorder  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
aminergic neurotransmitter loading into synaptic vesicle  (ISO)
animal organ morphogenesis  (ISO)
catecholamine biosynthetic process  (ISO)
cellular response to alkaloid  (ISO)
cellular response to glucose stimulus  (ISO)
cellular response to growth factor stimulus  (ISO)
cellular response to manganese ion  (ISO)
cellular response to nicotine  (ISO)
cellular response to xenobiotic stimulus  (ISO)
cerebral cortex development  (ISO)
circadian sleep/wake cycle  (ISO)
cognition  (ISO)
dopamine biosynthetic process  (ISO)
dopamine biosynthetic process from tyrosine  (ISO)
eating behavior  (ISO)
embryonic camera-type eye morphogenesis  (ISO)
epinephrine biosynthetic process  (ISO)
eye photoreceptor cell development  (ISO)
fatty acid metabolic process  (ISO)
glycoside metabolic process  (ISO)
heart development  (ISO)
hyaloid vascular plexus regression  (ISO)
isoquinoline alkaloid metabolic process  (ISO)
learning  (ISO)
locomotory behavior  (ISO)
mating behavior  (ISO)
memory  (ISO)
norepinephrine biosynthetic process  (ISO)
phthalate metabolic process  (ISO)
phytoalexin metabolic process  (ISO)
regulation of heart contraction  (ISO)
response to activity  (ISO)
response to amphetamine  (ISO)
response to corticosterone  (ISO)
response to electrical stimulus  (ISO)
response to estradiol  (ISO)
response to ethanol  (ISO)
response to ether  (ISO)
response to growth factor  (ISO)
response to herbicide  (ISO)
response to hypoxia  (ISO)
response to immobilization stress  (ISO)
response to insecticide  (ISO)
response to isolation stress  (ISO)
response to light stimulus  (ISO)
response to lipopolysaccharide  (ISO)
response to metal ion  (ISO)
response to nicotine  (ISO)
response to nutrient levels  (ISO)
response to organic cyclic compound  (ISO)
response to peptide hormone  (ISO)
response to pyrethroid  (ISO)
response to salt stress  (ISO)
response to steroid hormone  (ISO)
response to xenobiotic stimulus  (ISO)
response to zinc ion  (ISO)
social behavior  (ISO)
sphingolipid metabolic process  (ISO)
synaptic transmission, dopaminergic  (ISO)
terpene metabolic process  (ISO)
visual perception  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. Morphology and immunohistochemical characteristics of the pterygopalatine ganglion in the chinchilla (Chinchilla laniger, Molina). Szczurkowski A, etal., Pol J Vet Sci. 2013;16(2):359-68.
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Th
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542213,943,552 - 13,951,137 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542213,943,590 - 13,951,102 (-)NCBIChiLan1.0ChiLan1.0
TH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38112,163,929 - 2,171,815 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl112,163,929 - 2,171,815 (-)EnsemblGRCh38hg38GRCh38
GRCh37112,185,159 - 2,193,045 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36112,141,735 - 2,149,611 (-)NCBINCBI36Build 36hg18NCBI36
Build 34112,141,735 - 2,149,605NCBI
Celera112,221,752 - 2,229,624 (-)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef111,975,424 - 1,983,299 (-)NCBIHuRef
CHM1_1112,183,941 - 2,191,817 (-)NCBICHM1_1
T2T-CHM13v2.0112,253,295 - 2,261,192 (-)NCBIT2T-CHM13v2.0
Th
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397142,446,516 - 142,453,732 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7142,446,489 - 142,484,865 (-)EnsemblGRCm39 Ensembl
GRCm387142,892,779 - 142,899,995 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7142,892,752 - 142,931,128 (-)EnsemblGRCm38mm10GRCm38
MGSCv377150,078,681 - 150,085,871 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367142,702,166 - 142,709,356 (-)NCBIMGSCv36mm8
Celera7142,648,392 - 142,655,582 (-)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.06NCBI
Th
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81207,500,959 - 207,508,276 (-)NCBIGRCr8
mRatBN7.21198,071,500 - 198,078,832 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1198,071,503 - 198,109,767 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1206,450,387 - 206,457,507 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01213,537,252 - 213,544,373 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01206,211,403 - 206,218,524 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01216,073,034 - 216,080,287 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,073,031 - 216,080,287 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01222,935,462 - 222,942,715 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41203,164,253 - 203,171,506 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11203,317,712 - 203,324,972 (-)NCBI
Celera1195,642,057 - 195,649,203 (-)NCBICelera
RH 2.0 Map11080.1RGD
Cytogenetic Map1q41NCBI
TH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v294,590,095 - 4,597,992 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1113,801,867 - 3,809,764 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0112,204,820 - 2,212,750 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1112,234,095 - 2,242,030 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl112,231,248 - 2,242,433 (-)Ensemblpanpan1.1panPan2
TH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11846,327,136 - 46,334,973 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1846,327,137 - 46,335,602 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1844,936,923 - 44,944,750 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01847,006,609 - 47,014,412 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1847,006,611 - 47,014,441 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11846,455,359 - 46,462,897 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01846,035,687 - 46,043,215 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01846,782,129 - 46,789,967 (-)NCBIUU_Cfam_GSD_1.0
Th
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049472,535,447 - 2,543,939 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936794478,614 - 487,061 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936794478,651 - 486,887 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl21,499,620 - 1,506,170 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.121,499,628 - 1,506,180 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111,969,194 - 1,977,263 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11,966,460 - 1,977,218 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603899,163,059 - 99,174,711 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Th
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476715,003,092 - 15,010,154 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476715,003,073 - 15,010,207 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000022931   ⟹   ENSCLAP00000022722
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542213,943,552 - 13,951,137 (-)Ensembl
RefSeq Acc Id: XM_005384197   ⟹   XP_005384254
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542213,943,590 - 13,951,102 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005384254 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000022722
  ENSCLAP00000022722.1
RefSeq Acc Id: XP_005384254   ⟸   XM_005384197
- UniProtKB: A0A8C2YTS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000022722   ⟸   ENSCLAT00000022931

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015576 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000022931 ENTREZGENE
  ENSCLAT00000022931.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.800.10 UniProtKB/TrEMBL
  3.30.70.260 UniProtKB/TrEMBL
InterPro ACT-like_dom_sf UniProtKB/TrEMBL
  ArAA_hydroxylase UniProtKB/TrEMBL
  ArAA_hydroxylase_Fe/CU_BS UniProtKB/TrEMBL
  ArAA_hydroxylase_sf UniProtKB/TrEMBL
  Aro-AA_hydroxylase_C_sf UniProtKB/TrEMBL
  Aromatic-AA_hydroxylase_C UniProtKB/TrEMBL
  Eu_TyrOH_cat UniProtKB/TrEMBL
  TH_ACT UniProtKB/TrEMBL
  Tyr_3_mOase UniProtKB/TrEMBL
  Tyrosine_3-monooxygenase-like UniProtKB/TrEMBL
  Tyrosine_hydroxylase_CS UniProtKB/TrEMBL
NCBI Gene Th ENTREZGENE
PANTHER PTHR11473 UniProtKB/TrEMBL
  TYROSINE 3-MONOOXYGENASE UniProtKB/TrEMBL
Pfam Biopterin_H UniProtKB/TrEMBL
  TH_ACT UniProtKB/TrEMBL
  TOH_N UniProtKB/TrEMBL
PIRSF PIRSF000336 UniProtKB/TrEMBL
PRINTS FYWHYDRXLASE UniProtKB/TrEMBL
PROSITE BH4_AAA_HYDROXYL_1 UniProtKB/TrEMBL
  BH4_AAA_HYDROXYL_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF55021 UniProtKB/TrEMBL
  SSF56534 UniProtKB/TrEMBL
UniProt A0A8C2YTS5 ENTREZGENE, UniProtKB/TrEMBL