Ly6g6f (lymphocyte antigen 6 family member G6F) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ly6g6f (lymphocyte antigen 6 family member G6F) Chinchilla lanigera
Analyze
Symbol: Ly6g6f
Name: lymphocyte antigen 6 family member G6F
RGD ID: 8716939
Description: ASSOCIATED WITH megacolon (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lymphocyte antigen 6 complex locus protein G6f; lymphocyte antigen 6 complex, locus G6F
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437247,094 - 250,695 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955437247,408 - 250,877 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Ly6g6f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437247,094 - 250,695 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955437247,408 - 250,877 (+)NCBIChiLan1.0ChiLan1.0
LY6G6F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,706,866 - 31,710,679 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,706,866 - 31,710,679 (+)EnsemblGRCh38hg38GRCh38
GRCh37631,674,643 - 31,678,456 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,782,663 - 31,786,351 (+)NCBINCBI36Build 36hg18NCBI36
Build 34631,782,662 - 31,786,351NCBI
Celera633,272,902 - 33,276,590 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,460,902 - 31,464,590 (+)NCBIHuRef
CHM1_1631,676,801 - 31,680,489 (+)NCBICHM1_1
T2T-CHM13v2.0631,559,901 - 31,563,714 (+)NCBIT2T-CHM13v2.0
Ly6g6f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,299,514 - 35,304,571 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,299,456 - 35,304,586 (-)EnsemblGRCm39 Ensembl
GRCm381735,080,538 - 35,085,595 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,080,480 - 35,085,610 (-)EnsemblGRCm38mm10GRCm38
MGSCv371735,217,483 - 35,222,540 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361734,688,536 - 34,693,666 (-)NCBIMGSCv36mm8
Celera1738,177,222 - 38,182,277 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.59NCBI
Ly6g6f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,742,116 - 3,746,984 (+)NCBIGRCr8
mRatBN7.2203,737,459 - 3,742,327 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,737,459 - 3,752,248 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,436,626 - 4,441,648 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,798,679 - 3,803,701 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,336,523 - 4,341,546 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,071,041 - 5,076,627 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,071,062 - 5,076,586 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,143,971 - 7,149,557 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,801,118 - 3,805,986 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1203,801,344 - 3,806,213 (+)NCBI
Celera204,283,655 - 4,288,523 (-)NCBICelera
Cytogenetic Map20p12NCBI
LOC100969283
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,183,226 - 46,195,191 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,144,718 - 42,156,680 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,367,840 - 31,372,220 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,257,047 - 32,267,942 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,257,047 - 32,267,909 (+)Ensemblpanpan1.1panPan2
LY6G6F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,185,592 - 1,189,757 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,322,247 - 1,325,462 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,331,051 - 1,334,270 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,331,077 - 1,336,071 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,190,377 - 1,201,671 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,257,548 - 1,260,761 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,324,994 - 1,328,210 (+)NCBIUU_Cfam_GSD_1.0
LOC101960526
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,735,761 - 35,745,170 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,822,803 - 1,825,563 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049367271,816,220 - 1,817,933 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,822,803 - 1,825,563 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LY6G6F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,817,640 - 23,822,382 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,815,682 - 23,823,306 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103221756
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,313,045 - 40,340,331 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1740,305,738 - 40,316,963 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604431,618,212 - 31,630,506 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ly6g6f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,500,678 - 24,503,519 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,499,550 - 24,504,048 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000016438   ⟹   ENSCLAP00000016274
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955437247,094 - 250,695 (+)Ensembl
RefSeq Acc Id: XM_005389359   ⟹   XP_005389416
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955437247,408 - 250,689 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005389360   ⟹   XP_005389417
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955437247,408 - 250,877 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516851   ⟹   XP_013372305
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955437247,408 - 250,534 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005389416 (Get FASTA)   NCBI Sequence Viewer  
  XP_005389417 (Get FASTA)   NCBI Sequence Viewer  
  XP_013372305 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016274
  ENSCLAP00000016274.1
RefSeq Acc Id: XP_005389417   ⟸   XM_005389360
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VIN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005389416   ⟸   XM_005389359
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013372305   ⟸   XM_013516851
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000016274   ⟸   ENSCLAT00000016438
Protein Domains
Immunoglobulin subtype


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011200 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016438 ENTREZGENE
  ENSCLAT00000016438.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  LY6G6d/LY6G6f UniProtKB/TrEMBL
NCBI Gene Ly6g6f ENTREZGENE
PANTHER LYMPHOCYTE ANTIGEN 6 COMPLEX LOCUS PROTEIN G6F UniProtKB/TrEMBL
  PTHR32286 UniProtKB/TrEMBL
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8C2VIN3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-01-31 Ly6g6f  lymphocyte antigen 6 family member G6F    lymphocyte antigen 6 complex, locus G6F  Symbol and/or name change 5135510 APPROVED