LY6G6F (lymphocyte antigen 6 family member G6F) - Rat Genome Database

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Gene: LY6G6F (lymphocyte antigen 6 family member G6F) Canis lupus familiaris
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Symbol: LY6G6F
Name: lymphocyte antigen 6 family member G6F
RGD ID: 12055791
Description: ASSOCIATED WITH megacolon (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lymphocyte antigen 6 complex locus protein G6f; lymphocyte antigen 6 complex, locus G6F
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,185,592 - 1,189,757 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,322,247 - 1,325,462 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,331,051 - 1,334,270 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,331,077 - 1,336,071 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,190,377 - 1,201,671 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,257,548 - 1,260,761 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,324,994 - 1,328,210 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LY6G6F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,185,592 - 1,189,757 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,322,247 - 1,325,462 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,331,051 - 1,334,270 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,331,077 - 1,336,071 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,190,377 - 1,201,671 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,257,548 - 1,260,761 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,324,994 - 1,328,210 (+)NCBIUU_Cfam_GSD_1.0
LY6G6F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,706,866 - 31,710,679 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,706,866 - 31,710,679 (+)EnsemblGRCh38hg38GRCh38
GRCh37631,674,643 - 31,678,456 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,782,663 - 31,786,351 (+)NCBINCBI36Build 36hg18NCBI36
Build 34631,782,662 - 31,786,351NCBI
Celera633,272,902 - 33,276,590 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,460,902 - 31,464,590 (+)NCBIHuRef
CHM1_1631,676,801 - 31,680,489 (+)NCBICHM1_1
T2T-CHM13v2.0631,559,901 - 31,563,714 (+)NCBIT2T-CHM13v2.0
Ly6g6f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,299,514 - 35,304,571 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,299,456 - 35,304,586 (-)EnsemblGRCm39 Ensembl
GRCm381735,080,538 - 35,085,595 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,080,480 - 35,085,610 (-)EnsemblGRCm38mm10GRCm38
MGSCv371735,217,483 - 35,222,540 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361734,688,536 - 34,693,666 (-)NCBIMGSCv36mm8
Celera1738,177,222 - 38,182,277 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.59NCBI
Ly6g6f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,742,116 - 3,746,984 (+)NCBIGRCr8
mRatBN7.2203,737,459 - 3,742,327 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,737,459 - 3,752,248 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,436,626 - 4,441,648 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,798,679 - 3,803,701 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,336,523 - 4,341,546 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,071,041 - 5,076,627 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,071,062 - 5,076,586 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,143,971 - 7,149,557 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,801,118 - 3,805,986 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1203,801,344 - 3,806,213 (+)NCBI
Celera204,283,655 - 4,288,523 (-)NCBICelera
Cytogenetic Map20p12NCBI
Ly6g6f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437247,094 - 250,695 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955437247,408 - 250,877 (+)NCBIChiLan1.0ChiLan1.0
LOC100969283
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,183,226 - 46,195,191 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,144,718 - 42,156,680 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,367,840 - 31,372,220 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,257,047 - 32,267,942 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,257,047 - 32,267,909 (+)Ensemblpanpan1.1panPan2
LOC101960526
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,735,761 - 35,745,170 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,822,803 - 1,825,563 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049367271,816,220 - 1,817,933 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,822,803 - 1,825,563 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LY6G6F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,817,640 - 23,822,382 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,815,682 - 23,823,306 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103221756
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,313,045 - 40,340,331 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1740,305,738 - 40,316,963 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604431,618,212 - 31,630,506 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ly6g6f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,500,678 - 24,503,519 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,499,550 - 24,504,048 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LY6G6F
63 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1
Low 2 2 5 2 1 5
Below cutoff 5 5 20 4 4 5 6 12 8 5 6

Sequence


RefSeq Acc Id: ENSCAFT00845020997   ⟹   ENSCAFP00845016502
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl121,331,077 - 1,336,071 (+)Ensembl
RefSeq Acc Id: XM_005627153   ⟹   XP_005627210
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1121,185,594 - 1,189,757 (+)NCBI
Dog10K_Boxer_Tasha121,322,247 - 1,325,462 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038491351   ⟹   XP_038347279
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1121,190,377 - 1,193,586 (+)NCBI
RefSeq Acc Id: XM_038491352   ⟹   XP_038347280
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1121,190,377 - 1,201,671 (+)NCBI
RefSeq Acc Id: XM_038553546   ⟹   XP_038409474
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0121,324,994 - 1,328,210 (+)NCBI
RefSeq Acc Id: XM_038617436   ⟹   XP_038473364
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0121,257,548 - 1,260,761 (+)NCBI
RefSeq Acc Id: XM_038683021   ⟹   XP_038538949
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0121,331,051 - 1,334,270 (+)NCBI
RefSeq Acc Id: XP_005627210   ⟸   XM_005627153
- Peptide Label: isoform X1
- UniProtKB: A0A8P0N3W4 (UniProtKB/TrEMBL),   A0A8C0YUX1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038347280   ⟸   XM_038491352
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038347279   ⟸   XM_038491351
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038473364   ⟸   XM_038617436
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038538949   ⟸   XM_038683021
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MGU3 (UniProtKB/TrEMBL),   A0A8I3NMA5 (UniProtKB/TrEMBL),   A0A8C0YUX1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409474   ⟸   XM_038553546
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MGU3 (UniProtKB/TrEMBL),   A0A8C0YUX1 (UniProtKB/TrEMBL),   A0A8I3NMA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845016502   ⟸   ENSCAFT00845020997
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000000610 UniProtKB/TrEMBL
  ENSCAFG00030004236 UniProtKB/TrEMBL
  ENSCAFG00040010734 UniProtKB/TrEMBL
  ENSCAFG00845011828 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000000936.3 UniProtKB/TrEMBL
  ENSCAFT00030007828.1 UniProtKB/TrEMBL
  ENSCAFT00040019888.1 UniProtKB/TrEMBL
  ENSCAFT00845020997 ENTREZGENE
  ENSCAFT00845020997.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  LY6G6d/LY6G6f UniProtKB/TrEMBL
KEGG Report cfa:481715 UniProtKB/TrEMBL
NCBI Gene LY6G6F ENTREZGENE
PANTHER LYMPHOCYTE ANTIGEN 6 COMPLEX LOCUS PROTEIN G6F UniProtKB/TrEMBL
  PTHR32286 UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8C0MGU3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YUX1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NMA5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0N3W4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:110586 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-01 LY6G6F  lymphocyte antigen 6 family member G6F    lymphocyte antigen 6 complex, locus G6F  Symbol and/or name change 5135510 APPROVED