LY6G6F (lymphocyte antigen 6 family member G6F)

Gene: LY6G6F (lymphocyte antigen 6 family member G6F) Sus scrofa

Analyze

Symbol:

LY6G6F

Name:

lymphocyte antigen 6 family member G6F

RGD ID:

14173112

Description:

ENCODES a protein that exhibits acetylcholine receptor inhibitor activity (inferred); INVOLVED IN acetylcholine receptor signaling pathway (inferred); ASSOCIATED WITH megacolon (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN external side of plasma membrane (inferred); plasma membrane (inferred); synapse (inferred)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

G6F-LY6G6D fusion protein; g6g-ly6g6d; lymphocyte antigen 6 complex locus protein G6f; lymphocyte antigen 6 complex, locus G6F

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	23,817,640 - 23,822,382 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	23,815,682 - 23,823,306 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

megacolon (ISO)

proteasome-associated autoinflammatory syndrome 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acetylcholine receptor signaling pathway (IEA)

Cellular Component

external side of plasma membrane (IEA)

plasma membrane (IEA)

synapse (IEA)

Molecular Function

acetylcholine receptor inhibitor activity (IEA)

protein binding (ISO)

References

Genomics

Comparative Map Data

LY6G6F
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	23,817,640 - 23,822,382 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	23,815,682 - 23,823,306 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

LY6G6F
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	31,706,866 - 31,710,679 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	31,706,866 - 31,710,679 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	31,674,643 - 31,678,456 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	31,782,663 - 31,786,351 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	31,782,662 - 31,786,351	NCBI
Celera	6	33,272,902 - 33,276,590 (+)	NCBI		Celera
Cytogenetic Map	6	p21.33	NCBI
HuRef	6	31,460,902 - 31,464,590 (+)	NCBI		HuRef
CHM1_1	6	31,676,801 - 31,680,489 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	31,559,901 - 31,563,714 (+)	NCBI		T2T-CHM13v2.0

Ly6g6f
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	35,299,514 - 35,304,571 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	35,299,456 - 35,304,586 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	35,080,538 - 35,085,595 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	35,080,480 - 35,085,610 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	35,217,483 - 35,222,540 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	34,688,536 - 34,693,666 (-)	NCBI		MGSCv36	mm8
Celera	17	38,177,222 - 38,182,277 (-)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI
cM Map	17	18.59	NCBI

Ly6g6f
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	3,742,116 - 3,746,984 (+)	NCBI		GRCr8
mRatBN7.2	20	3,737,459 - 3,742,327 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	3,737,459 - 3,752,248 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	4,436,626 - 4,441,648 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	3,798,679 - 3,803,701 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	4,336,523 - 4,341,546 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	5,071,041 - 5,076,627 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	5,071,062 - 5,076,586 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	7,143,971 - 7,149,557 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	3,801,118 - 3,805,986 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	3,801,344 - 3,806,213 (+)	NCBI
Celera	20	4,283,655 - 4,288,523 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

Ly6g6f
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	247,094 - 250,695 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	247,408 - 250,877 (+)	NCBI	ChiLan1.0	ChiLan1.0

LOC100969283
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	46,183,226 - 46,195,191 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	42,144,718 - 42,156,680 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	31,367,840 - 31,372,220 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	32,257,047 - 32,267,942 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	32,257,047 - 32,267,909 (+)	Ensembl	panpan1.1		panPan2

LY6G6F
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	1,185,592 - 1,189,757 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	1,322,247 - 1,325,462 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	1,331,051 - 1,334,270 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	1,331,077 - 1,336,071 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	1,190,377 - 1,201,671 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	1,257,548 - 1,260,761 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	1,324,994 - 1,328,210 (+)	NCBI		UU_Cfam_GSD_1.0

LOC101960526
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	35,735,761 - 35,745,170 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936727	1,822,803 - 1,825,563 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0 Ensembl	NW_004936727	1,816,220 - 1,817,933 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936727	1,822,803 - 1,825,563 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC103221756
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	40,313,045 - 40,340,331 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	40,305,738 - 40,316,963 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	31,618,212 - 31,630,506 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ly6g6f
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	24,500,678 - 24,503,519 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	24,499,550 - 24,504,048 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in LY6G6F
80 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001195347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021098150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021098151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021098152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU282344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01081845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KU253662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KU253663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KU253664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KU253665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KU253668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000051619 ⟹ ENSSSCP00000039866

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	23,817,653 - 23,822,382 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000052677 ⟹ ENSSSCP00000041289

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	23,817,640 - 23,819,003 (+)	Ensembl

RefSeq Acc Id:

NM_001195347 ⟹ NP_001182276

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	23,817,653 - 23,822,382 (+)	NCBI

Sequence:

show sequence

GAGAGAACGTGGTAAGCTCTCGCCATGGCTGGCATATTCCTCCTCCTTCTGTGCCTCCGTGGGC
TCCCCCGGGCTGCTGCAGCCGACATCCACACCATCTATGTGGCCTTGGGGGAAGCAGTGGAGCT
GCCATGTCCTTCACCACCCACCCTGCATGGGGACGAATTCCTGTCCTGGTTCCGCAGCCTTGCA
ACAGGCTCCTCCACTGCCTTGGTGGCCCGAGTCCAAGTGGCCAGTCCAGCCCCAGACTCTGGGA
AGCCCCACAGGGAATCCAGACTCAAACTGCTGAGAAACCACTCTTTGTGGCTGGAAGGGTCCAA
GGAGGGAGACGCCGGGCAGTACTGGTGCGCTATGGAGGGTCAGCGCCACACGTACCATAACTGG
AGGGTCTATGATGTCTCCGTGTTCAGAGGATCCCAGTACTCCGCGAGGGCCGAAGACGGATCCC
CCTGCTCTGTCCTCCTGTGCTCTGTGGTCCCCGCCAGACGCCTGGACTCTGTGACCTGGCTGGA
GGGGAAGAGTTCCGTGAAGGGCCACTCGAAGTCCTTCTGGGGTGATGGGGCCGCCCTGCTCTTG
GTGTGTCCCGGGGATGGACTACCCGAGCCCAGGGCACGGAGACCCAGAATCATTCGCTGCCTCT
TGCCTCAGAACAAAGGGGTCAGCTTTAGCCTGGCAGCCGCCACGGATGCCTCCCCTGCCCCCTG
TGCCTCTTCTGCAGGCTGGGATGTGCCCTGGATCCTGATGCTCCTGCTCACAGTGGGCCAGGGG
CTCACCATCCTGGTCCTCAGCATCATGCTCTGGAGGTGGAGGGTCCAGGGGGCTCGGCGCAGAG
ATGCTTCAATTCCTCAGTTCAAACCAGAGATCCAGGTCTACGAGAACATCCATTTGGCCCATCT
CAGCCCACCTGCCCCTAAGACCAGGTGATCTCGATGATACCTGCTGGGAAGTGTGACCTGCTGT
CTCCCTGGCCATCTGGCACCTGAAGGAGTCACTGAAAAACCTTGGCAATGGGGGAGGGGCTCGG
TCCCACTGGCTTCCATCAGCCAAGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTT
TAAAGGCCCAAGGGCTGAAGGACAGGAGAAGCATTATTCGGTGATGTAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_021098150 ⟹ XP_020953809

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	23,815,682 - 23,823,306 (+)	NCBI

Sequence:

show sequence

CACAGCGGGGACTCCTCTCAAACACATAAAATTTAATAGTCAGGGGCTCAGCAGTCTTTATGTG
CCAGATAGCCACAGAGAGAGTCATTCTAAGTCCCTTATGGACTACCGACTGGGTGTGCAGTCTT
GTGCCAAGTTCCCTGAAAACCAACATGAAGACAACTTCTTCGCTCATGGGTGGTTGGTCATCTC
TTGGATTGAAGGAGAGAACACAGAATACTTCCAGACTGATGGAAGGTGGACAGCTTTGACCCCT
TCTGCACAAGCTTCTCAGCGTGGAGAGTCTCTGATCTGAGTCCTTCAGCGGATGGAGTCTGATG
GTTGAAGAGGTCATCTTTGGACGGGTCTGATCTGGGTCTTTTTCCCCTTGGCACAGAAATGGTG
GTTGTCACTTCTTCCCTGGCAGACATGCAGCTGGGCTTTATCACCCCGGCATTCCCATCCTCTT
CAGAGGCCCGTGTCACTCCAGACTAGGGAGTGTGGGCCTTTATCTGGGCTCTGTTTCCTCCCTG
GGGATAGCAGGTCCCAAGCAAGAGAACGTGGTAAGCTCTCGCCATGGCTGGCATATTCCTCCTC
CTTCTGTGCCTCCGTGGGCTCCCCCGGGCTGCTGCAGCCGACATCCACACCATCTATGTGGCCT
TGGGGGAAGCAGTGGAGCTGCCATGTCCTTCACCACCCACCCTGCATGGGGACGAATTCCTGTC
CTGGTTCCGCAGCCTTGCAACAGGCTCCTCCACTGCCTTGGTGGCCCGAGTCCAAGTGGCCAGT
CCAGCCCCAGACTCTGGGAAGCCCCACAGGGAATCCAGGCTCAAACTGCTGAGAAACCACTCTT
TGTGGCTGGAAGGGTCCAAGGAGGGAGACGCCGGGCAGTACTGGTGCGCTATGGAGGGTCAGCA
CCACACGTACCATAACTGGAGGGTCTATGATGTCTCCGTGTTCAGAGGATCCCAGTACTCCGCG
AGGGCCGCAGACGGATCCCCCTGCTCTGTCCTCCTGTGCTCTGTGGTCCCCGCCAGACGCCTGG
ACTCTGTGACCTGGCTGGAGGGGAAGAGTTCCGTGAAGGGCCACTCGAAGTCCTTCTGGGGTGA
TGGGGCCGCCCTGCTCTTGGTGTGTCCCGGGGATGGACTACCCGAGCCCAGGGCACGGAGACCC
AGAATCATTCGCTGCCTCTTGCCTCAGAACAAAGGGGTCAGCTTTAGCCTGGCAGCCGCCACGG
ATGCCTCCCCTGCCCCCTGTGCCTCTTCTGCAGGCTGGGATGTGCCCTGGATCCTGATGCTCCT
GCTCACAGTGGGCCAGGGGCTCACCATCCTGGTCCTCAGCATCATGCTCTGGAGGTGGAGGGTC
CAGGGGGCTCGGCGCAGAGGCTTCTTCTCCCCAGATGCTTCAATTCCTCAGTTCAAACCAGAGA
TCCAGGTCTACGAGAACATCCATTTGGCCCATCTCAGCCCACCTGCCCCTAAGACCAGGTGATC
TCGATGATACCTGCTGGGAAGTGTGACCTGCTGTCTCCCTGGCCATCTGGCACCTGAAGGAGTC
ACTGAAAAACCTTGGCAATGGGGGAGGGGCTCGGTCCCACTGGCTTCCATCAGCCAAGCTCTGG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTAAAGGCCCAAGGGCTGAA
GGACAGGAGAAGCATTATTTGGTGATGTCACCTATGAAAAGGTGTGATTTCCTGTCTCACAGCA
GTGAGTGGAGGGATGGCCTGAACCTGCAGGACCATGGGGTTGAGGGGGTGGGGATGAGGCAGAA
AAGAGACAGAAGGATCCAGAGACTTGAGGAGTGGCCAGTTATGGGGGGAACCAAAGGACAAATG
GGGGAAGCTGAAGAAGAGAAGGACAAGGACAAATGGACAAATGGGGGAAGAGGCCCCGGGTGGG
AGGGGGAGGATGGAGGGCCAGGGAGACTAGAAGGCAGACTCGACATGCCTCTAAACTAAGCCAG
ATCCCTGCCTTTCTCATCCTCACAAGGAAGAGAAGACACTGACAAGAATAAGCACCTTTGATTA
GGCCCCAAGCTTCCTCAGATGCAGGGGGAAGTTCCTGGGTCAGGATGAGGGCACCTGTTCCGGC
CCCCAGCCCCAGGCCCCCCTCCTTATCCTAGGCACTCCATTGTGGCATCCAGAGCAGGGAGCCC
CTTATCACCCCAACATCCTGAGAGCCCCACCAGTCACACGCTCGCTATCCCCCTGGGCAGAGGG
AGTGTCCACAGCAGTGGGCGGGTGGATTCCCTGGTGGGGCGTGTAATTGAGCCCTGAGTGCTGG
ACTGTCCGTGAACCCTGGACAAGTCTGGGCTGGTGAAGCAGGGGACAAGTCCATGCTCCCAGCT
CTGGTCTCAGGCAGAAATAAGCTGGCCTCCAGCCACACCCTCATCACTGCACCAGAGGCCCTTT
TGTGTATCTACTCAAGCTTGGGCTTCACTGGGGCAAAGCTTTCTTGGAAGTCACACCTTAAGCC
CTCATGCTGCAGTGGCTTAAGCTAAGCTATTGTCAAGAAAGAGGACGCCAACGACAGAAGGAGG
ACAAAGCGAAAGTTGTGGTTCAGGTGCCAACACCCAGCCCAACACACCAAGCAGCT

hide sequence

RefSeq Acc Id:

XM_021098151 ⟹ XP_020953810

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	23,815,682 - 23,822,289 (+)	NCBI

Sequence:

show sequence

CACAGCGGGGACTCCTCTCAAACACATAAAATTTAATAGTCAGGGGCTCAGCAGTCTTTATGTG
CCAGATAGCCACAGAGAGAGTCATTCTAAGTCCCTTATGGACTACCGACTGGGTGTGCAGTCTT
GTGCCAAGTTCCCTGAAAACCAACATGAAGACAACTTCTTCGCTCATGGGTGGTTGGTCATCTC
TTGGATTGAAGGAGAGAACACAGAATACTTCCAGACTGATGGAAGGTGGACAGCTTTGACCCCT
TCTGCACAAGCTTCTCAGCGTGGAGAGTCTCTGATCTGAGTCCTTCAGCGGATGGAGTCTGATG
GTTGAAGAGGTCATCTTTGGACGGGTCTGATCTGGGTCTTTTTCCCCTTGGCACAGAAATGGTG
GTTGTCACTTCTTCCCTGGCAGACATGCAGCTGGGCTTTATCACCCCGGCATTCCCATCCTCTT
CAGAGGCCCGTGTCACTCCAGACTAGGGAGTGTGGGCCTTTATCTGGGCTCTGTTTCCTCCCTG
GGGATAGCAGGTCCCAAGCAAGAGAACGTGGTAAGCTCTCGCCATGGCTGGCATATTCCTCCTC
CTTCTGTGCCTCCGTGGGCTCCCCCGGGCTGCTGCAGCCGACATCCACACCATCTATGTGGCCT
TGGGGGAAGCAGTGGAGCTGCCATGTCCTTCACCACCCACCCTGCATGGGGACGAATTCCTGTC
CTGGTTCCGCAGCCTTGCAACAGGCTCCTCCACTGCCTTGGTGGCCCGAGTCCAAGTGGCCAGT
CCAGCCCCAGACTCTGGGAAGCCCCACAGGGAATCCAGGCTCAAACTGCTGAGAAACCACTCTT
TGTGGCTGGAAGGGTCCAAGGAGGGAGACGCCGGGCAGTACTGGTGCGCTATGGAGGGTCAGCA
CCACACGTACCATAACTGGAGGGTCTATGATGTCTCCGTGTTCAGAGGATCCCAGTACTCCGCG
AGGGCCGCAGACGGATCCCCCTGCTCTGTCCTCCTGTGCTCTGTGGTCCCCGCCAGACGCCTGG
ACTCTGTGACCTGGCTGGAGGGGAAGAGTTCCGTGAAGGGCCACTCGAAGTCCTTCTGGGGTGA
TGGGGCCGCCCTGCTCTTGGTGTGTCCCGGGGATGGACTACCCGAGCCCAGGGCACGGAGACCC
AGAATCATTCGCTGCCTCTTGCCTCAGAACAAAGGGGTCAGCTTTAGCCTGGCAGCCGCCACGG
ATGCCTCCCCTGCCCCCTGTGCCTCTTCTGCAGGCTGGGATGTGCCCTGGATCCTGATGCTCCT
GCTCACAGTGGGCCAGGGGCTCACCATCCTGGTCCTCAGCATCATGCTCTGGAGGTGGAGGGTC
CAGGGGGCTCGGCGCAGAGATGCTTCAATTCCTCAGTTCAAACCAGAGATCCAGGTCTACGAGA
ACATCCATTTGGCCCATCTCAGCCCACCTGCCCCTAAGACCAGGTGATCTCGATGATACCTGCT
GGGAAGTGTGACCTGCTGTCTCCCTGGCCATCTGGCACCTGAAGGAGTCACTGAAAAACCTTGG
CAATGGGGGAGGGGCTCGGTCCCACTGGCTTCCATCAGCCAAGCTCTG

hide sequence

RefSeq Acc Id:

XM_021098152 ⟹ XP_020953811

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	23,815,682 - 23,823,306 (+)	NCBI

Sequence:

show sequence

CACAGCGGGGACTCCTCTCAAACACATAAAATTTAATAGTCAGGGGCTCAGCAGTCTTTATGTG
CCAGATAGCCACAGAGAGAGTCATTCTAAGTCCCTTATGGACTACCGACTGGGTGTGCAGTCTT
GTGCCAAGTTCCCTGAAAACCAACATGAAGACAACTTCTTCGCTCATGGGTGGTTGGTCATCTC
TTGGATTGAAGGAGAGAACACAGAATACTTCCAGACTGATGGAAGGTGGACAGCTTTGACCCCT
TCTGCACAAGCTTCTCAGCGTGGAGAGTCTCTGATCTGAGTCCTTCAGCGGATGGAGTCTGATG
GTTGAAGAGGTCATCTTTGGACGGGTCTGATCTGGGTCTTTTTCCCCTTGGCACAGAAATGGTG
GTTGTCACTTCTTCCCTGGCAGACATGCAGCTGGGCTTTATCACCCCGGCATTCCCATCCTCTT
CAGAGGCCCGTGTCACTCCAGACTAGGGAGTGTGGGCCTTTATCTGGGCTCTGTTTCCTCCCTG
GGGATAGCAGGTCCCAAGCAAGAGAACGTGGTAAGCTCTCGCCATGGCTGGCATATTCCTCCTC
CTTCTGTGCCTCCGTGGGCTCCCCCGGGCTGCTGCAGCCGACATCCACACCATCTATGTGGCCT
TGGGGGAAGCAGTGGAGCTGCCATGTCCTTCACCACCCACCCTGCATGGGGACGAATTCCTGTC
CTGGTTCCGCAGCCTTGCAACAGGCTCCTCCACTGCCTTGGTGGCCCGAGTCCAAGTGGCCAGT
CCAGCCCCAGACTCTGGGAAGCCCCACAGGGAATCCAGGCTCAAACTGCTGAGAAACCACTCTT
TGTGGCTGGAAGGGTCCAAGGAGGGAGACGCCGGGCAGTACTGGTGCGCTATGGAGGGTCAGCA
CCACACGTACCATAACTGGAGGGTCTATGATGTCTCCGTGTTCAGAGGATCCCAGTACTCCGCG
AGGGCCGCAGACGGATCCCCCTGCTCTGTCCTCCTGTGCTCTGTGGTCCCCGCCAGACGCCTGG
ACTCTGTGACCTGGCTGGAGGGGAAGAGTTCCGTGAAGGGCCACTCGAAGTCCTTCTGGGGTGA
TGGGGCCGCCCTGCTCTTGGTGTGTCCCGGGGATGGACTACCCGAGCCCAGGGCACGGAGACCC
AGAATCATTCGCTGCCTCTTGCCTCAGAACAAAGGGGTCAGCTTTAGCCTGGCAGGCTGGGATG
TGCCCTGGATCCTGATGCTCCTGCTCACAGTGGGCCAGGGGCTCACCATCCTGGTCCTCAGCAT
CATGCTCTGGAGGTGGAGGGTCCAGGGGGCTCGGCGCAGAGGCTTCTTCTCCCCAGATGCTTCA
ATTCCTCAGTTCAAACCAGAGATCCAGGTCTACGAGAACATCCATTTGGCCCATCTCAGCCCAC
CTGCCCCTAAGACCAGGTGATCTCGATGATACCTGCTGGGAAGTGTGACCTGCTGTCTCCCTGG
CCATCTGGCACCTGAAGGAGTCACTGAAAAACCTTGGCAATGGGGGAGGGGCTCGGTCCCACTG
GCTTCCATCAGCCAAGCTCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TTTTAAAGGCCCAAGGGCTGAAGGACAGGAGAAGCATTATTTGGTGATGTCACCTATGAAAAGG
TGTGATTTCCTGTCTCACAGCAGTGAGTGGAGGGATGGCCTGAACCTGCAGGACCATGGGGTTG
AGGGGGTGGGGATGAGGCAGAAAAGAGACAGAAGGATCCAGAGACTTGAGGAGTGGCCAGTTAT
GGGGGGAACCAAAGGACAAATGGGGGAAGCTGAAGAAGAGAAGGACAAGGACAAATGGACAAAT
GGGGGAAGAGGCCCCGGGTGGGAGGGGGAGGATGGAGGGCCAGGGAGACTAGAAGGCAGACTCG
ACATGCCTCTAAACTAAGCCAGATCCCTGCCTTTCTCATCCTCACAAGGAAGAGAAGACACTGA
CAAGAATAAGCACCTTTGATTAGGCCCCAAGCTTCCTCAGATGCAGGGGGAAGTTCCTGGGTCA
GGATGAGGGCACCTGTTCCGGCCCCCAGCCCCAGGCCCCCCTCCTTATCCTAGGCACTCCATTG
TGGCATCCAGAGCAGGGAGCCCCTTATCACCCCAACATCCTGAGAGCCCCACCAGTCACACGCT
CGCTATCCCCCTGGGCAGAGGGAGTGTCCACAGCAGTGGGCGGGTGGATTCCCTGGTGGGGCGT
GTAATTGAGCCCTGAGTGCTGGACTGTCCGTGAACCCTGGACAAGTCTGGGCTGGTGAAGCAGG
GGACAAGTCCATGCTCCCAGCTCTGGTCTCAGGCAGAAATAAGCTGGCCTCCAGCCACACCCTC
ATCACTGCACCAGAGGCCCTTTTGTGTATCTACTCAAGCTTGGGCTTCACTGGGGCAAAGCTTT
CTTGGAAGTCACACCTTAAGCCCTCATGCTGCAGTGGCTTAAGCTAAGCTATTGTCAAGAAAGA
GGACGCCAACGACAGAAGGAGGACAAAGCGAAAGTTGTGGTTCAGGTGCCAACACCCAGCCCAA
CACACCAAGCAGCT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001182276	(Get FASTA)	NCBI Sequence Viewer
	XP_020953809	(Get FASTA)	NCBI Sequence Viewer
	XP_020953810	(Get FASTA)	NCBI Sequence Viewer
	XP_020953811	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ABX82813	(Get FASTA)	NCBI Sequence Viewer
	APT43258	(Get FASTA)	NCBI Sequence Viewer
	APT43259	(Get FASTA)	NCBI Sequence Viewer
	APT43260	(Get FASTA)	NCBI Sequence Viewer
	APT43261	(Get FASTA)	NCBI Sequence Viewer
	APT43264	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000039866
	ENSSSCP00000039866.1
	ENSSSCP00000041289.3
	ENSSSCP00005036892.1
	ENSSSCP00015046687.1
	ENSSSCP00015046703.1
	ENSSSCP00015046708.1
	ENSSSCP00025048225.1
	ENSSSCP00030038442.1
	ENSSSCP00035012581.1
	ENSSSCP00040032190.1
	ENSSSCP00045049084.1
	ENSSSCP00050005411.1
	ENSSSCP00050005443.1
	ENSSSCP00055036808.1
	ENSSSCP00060033704.1
	ENSSSCP00060033720.1
	ENSSSCP00065024958.1
	ENSSSCP00065024968.1
	ENSSSCP00070039947.1

RefSeq Acc Id:	XP_020953809 ⟸ XM_021098150
- Peptide Label:	isoform X1
- UniProtKB:	A0A1L6ZA11 (UniProtKB/TrEMBL), A0A8D0KCA4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGIFLLLLCLRGLPRAAAADIHTIYVALGEAVELPCPSPPTLHGDEFLSWFRSLATGSSTALV ARVQVASPAPDSGKPHRESRLKLLRNHSLWLEGSKEGDAGQYWCAMEGQHHTYHNWRVYDVSVF RGSQYSARAADGSPCSVLLCSVVPARRLDSVTWLEGKSSVKGHSKSFWGDGAALLLVCPGDGLP EPRARRPRIIRCLLPQNKGVSFSLAAATDASPAPCASSAGWDVPWILMLLLTVGQGLTILVLSI MLWRWRVQGARRRGFFSPDASIPQFKPEIQVYENIHLAHLSPPAPKTR hide sequence

RefSeq Acc Id:	XP_020953811 ⟸ XM_021098152
- Peptide Label:	isoform X3
- UniProtKB:	A0A1L6ZA05 (UniProtKB/TrEMBL), A0A8D0KCA4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGIFLLLLCLRGLPRAAAADIHTIYVALGEAVELPCPSPPTLHGDEFLSWFRSLATGSSTALV ARVQVASPAPDSGKPHRESRLKLLRNHSLWLEGSKEGDAGQYWCAMEGQHHTYHNWRVYDVSVF RGSQYSARAADGSPCSVLLCSVVPARRLDSVTWLEGKSSVKGHSKSFWGDGAALLLVCPGDGLP EPRARRPRIIRCLLPQNKGVSFSLAGWDVPWILMLLLTVGQGLTILVLSIMLWRWRVQGARRRG FFSPDASIPQFKPEIQVYENIHLAHLSPPAPKTR hide sequence

RefSeq Acc Id:	XP_020953810 ⟸ XM_021098151
- Peptide Label:	isoform X2
- UniProtKB:	A0A1L6ZA08 (UniProtKB/TrEMBL), A0A4X1VA99 (UniProtKB/TrEMBL), A0A8D0KCA4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGIFLLLLCLRGLPRAAAADIHTIYVALGEAVELPCPSPPTLHGDEFLSWFRSLATGSSTALV ARVQVASPAPDSGKPHRESRLKLLRNHSLWLEGSKEGDAGQYWCAMEGQHHTYHNWRVYDVSVF RGSQYSARAADGSPCSVLLCSVVPARRLDSVTWLEGKSSVKGHSKSFWGDGAALLLVCPGDGLP EPRARRPRIIRCLLPQNKGVSFSLAAATDASPAPCASSAGWDVPWILMLLLTVGQGLTILVLSI MLWRWRVQGARRRDASIPQFKPEIQVYENIHLAHLSPPAPKTR hide sequence

RefSeq Acc Id:	NP_001182276 ⟸ NM_001195347
- Peptide Label:	precursor
- UniProtKB:	B9TSQ6 (UniProtKB/TrEMBL), A0A8D0KCA4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGIFLLLLCLRGLPRAAAADIHTIYVALGEAVELPCPSPPTLHGDEFLSWFRSLATGSSTALV ARVQVASPAPDSGKPHRESRLKLLRNHSLWLEGSKEGDAGQYWCAMEGQRHTYHNWRVYDVSVF RGSQYSARAEDGSPCSVLLCSVVPARRLDSVTWLEGKSSVKGHSKSFWGDGAALLLVCPGDGLP EPRARRPRIIRCLLPQNKGVSFSLAAATDASPAPCASSAGWDVPWILMLLLTVGQGLTILVLSI MLWRWRVQGARRRDASIPQFKPEIQVYENIHLAHLSPPAPKTR hide sequence

RefSeq Acc Id:

ENSSSCP00000039866 ⟸ ENSSSCT00000051619

RefSeq Acc Id:

ENSSSCP00000041289 ⟸ ENSSSCT00000052677

Protein Domains

Ig-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000033590	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005037086	UniProtKB/TrEMBL
	ENSSSCG00015080600	UniProtKB/TrEMBL
	ENSSSCG00025077078	UniProtKB/TrEMBL
	ENSSSCG00030059586	UniProtKB/TrEMBL
	ENSSSCG00035024286	UniProtKB/TrEMBL
	ENSSSCG00040054546	UniProtKB/TrEMBL
	ENSSSCG00045039525	UniProtKB/TrEMBL
	ENSSSCG00050009603	UniProtKB/TrEMBL
	ENSSSCG00055023053	UniProtKB/TrEMBL
	ENSSSCG00060057204	UniProtKB/TrEMBL
	ENSSSCG00065041972	UniProtKB/TrEMBL
	ENSSSCG00070023699	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000051619	ENTREZGENE
	ENSSSCT00000051619.2	UniProtKB/TrEMBL
	ENSSSCT00000052677.3	UniProtKB/TrEMBL
	ENSSSCT00005059725.1	UniProtKB/TrEMBL
	ENSSSCT00015109681.1	UniProtKB/TrEMBL
	ENSSSCT00015109698.1	UniProtKB/TrEMBL
	ENSSSCT00015109704.1	UniProtKB/TrEMBL
	ENSSSCT00025107090.1	UniProtKB/TrEMBL
	ENSSSCT00030083690.1	UniProtKB/TrEMBL
	ENSSSCT00035031996.1	UniProtKB/TrEMBL
	ENSSSCT00040075025.1	UniProtKB/TrEMBL
	ENSSSCT00045068897.1	UniProtKB/TrEMBL
	ENSSSCT00050013070.1	UniProtKB/TrEMBL
	ENSSSCT00050013143.1	UniProtKB/TrEMBL
	ENSSSCT00055046155.1	UniProtKB/TrEMBL
	ENSSSCT00060077995.1	UniProtKB/TrEMBL
	ENSSSCT00060078023.1	UniProtKB/TrEMBL
	ENSSSCT00065057451.1	UniProtKB/TrEMBL
	ENSSSCT00065057472.1	UniProtKB/TrEMBL
	ENSSSCT00070047347.1	UniProtKB/TrEMBL
Gene3D-CATH	2.10.60.10	UniProtKB/TrEMBL
	2.60.40.10	UniProtKB/TrEMBL
InterPro	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_V-set	UniProtKB/TrEMBL
	LY6G6d/LY6G6f	UniProtKB/TrEMBL
	Snake_toxin-like_sf	UniProtKB/TrEMBL
KEGG Report	ssc:100271881	UniProtKB/TrEMBL
NCBI Gene	LY6G6F	ENTREZGENE
PANTHER	LYMPHOCYTE ANTIGEN 6 COMPLEX LOCUS PROTEIN G6D	UniProtKB/TrEMBL
	LYMPHOCYTE ANTIGEN 6 COMPLEX LOCUS PROTEIN G6F	UniProtKB/TrEMBL
	PTHR32286	UniProtKB/TrEMBL
Pfam	V-set	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
SMART	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
	SSF57302	UniProtKB/TrEMBL
UniProt	A0A1L6ZA05	ENTREZGENE, UniProtKB/TrEMBL
	A0A1L6ZA08	ENTREZGENE, UniProtKB/TrEMBL
	A0A1L6ZA11	ENTREZGENE, UniProtKB/TrEMBL
	A0A1L6ZA20_PIG	UniProtKB/TrEMBL
	A0A1L6ZAA0_PIG	UniProtKB/TrEMBL
	A0A4X1VA99	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0KCA4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0QGE9_PIG	UniProtKB/TrEMBL
	A0A8D1YQ50_PIG	UniProtKB/TrEMBL
	B9TSQ6	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A287ABM1	UniProtKB/TrEMBL
VGNC ID	VGNC:110203	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar