Cnga1 (cyclic nucleotide gated channel subunit alpha 1) - Rat Genome Database

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Gene: Cnga1 (cyclic nucleotide gated channel subunit alpha 1) Chinchilla lanigera
Analyze
Symbol: Cnga1
Name: cyclic nucleotide gated channel subunit alpha 1
RGD ID: 8710221
Description: ENCODES a protein that exhibits cAMP binding (ortholog); cGMP binding (ortholog); intracellularly cAMP-activated cation channel activity (ortholog); INVOLVED IN membrane depolarization (ortholog); regulation of cytosolic calcium ion concentration (ortholog); spermatogenesis (ortholog); PARTICIPATES IN altered visual phototransduction pathway; calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH cone-rod dystrophy (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN intracellular cyclic nucleotide activated cation channel complex (ortholog); membrane (ortholog); photoreceptor outer segment (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cGMP-gated cation channel alpha-1; cyclic nucleotide gated channel alpha 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955443639,096 - 649,606 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955443615,061 - 649,693 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cnga1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955443639,096 - 649,606 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955443615,061 - 649,693 (+)NCBIChiLan1.0ChiLan1.0
CNGA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38447,935,977 - 48,016,681 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl447,935,977 - 48,016,681 (-)EnsemblGRCh38hg38GRCh38
GRCh37447,937,994 - 48,018,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36447,632,751 - 47,649,483 (-)NCBINCBI36Build 36hg18NCBI36
Build 34447,778,958 - 47,824,359NCBI
Celera448,386,872 - 48,463,813 (-)NCBICelera
Cytogenetic Map4p12NCBI
HuRef447,257,564 - 47,334,503 (-)NCBIHuRef
CHM1_1447,937,102 - 48,014,053 (-)NCBICHM1_1
T2T-CHM13v2.0447,903,221 - 47,983,754 (-)NCBIT2T-CHM13v2.0
Cnga1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39572,761,039 - 72,800,095 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl572,761,039 - 72,801,618 (-)EnsemblGRCm39 Ensembl
GRCm38572,603,696 - 72,642,752 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl572,603,696 - 72,644,275 (-)EnsemblGRCm38mm10GRCm38
MGSCv37572,994,935 - 73,033,991 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36572,882,866 - 72,898,284 (-)NCBIMGSCv36mm8
Celera569,852,095 - 69,891,530 (-)NCBICelera
Cytogenetic Map5C3.2NCBI
cM Map538.44NCBI
Cnga1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81435,920,948 - 35,959,065 (+)NCBIGRCr8
mRatBN7.21435,566,947 - 35,605,065 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1435,567,125 - 35,605,065 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1435,932,350 - 35,970,416 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01437,237,096 - 37,275,170 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01435,725,471 - 35,763,536 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01438,155,771 - 38,171,107 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1438,155,759 - 38,171,010 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01437,966,503 - 37,981,839 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41438,017,762 - 38,033,098 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11438,021,111 - 38,036,448 (+)NCBI
Celera1434,842,269 - 34,857,640 (+)NCBICelera
Cytogenetic Map14p11NCBI
CNGA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2379,844,967 - 79,929,771 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1480,106,473 - 80,186,832 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0474,196,877 - 74,213,563 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1484,865,999 - 84,945,692 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl484,910,653 - 84,945,248 (+)Ensemblpanpan1.1panPan2
CNGA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11343,831,159 - 43,864,276 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1343,831,163 - 43,864,276 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1343,783,705 - 43,816,818 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01344,430,864 - 44,464,133 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1344,430,868 - 44,464,133 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11344,108,422 - 44,141,536 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01343,640,294 - 43,673,581 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01344,523,433 - 44,556,694 (-)NCBIUU_Cfam_GSD_1.0
Cnga1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528532,190,442 - 32,206,819 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648214,091,913 - 14,107,787 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648214,091,343 - 14,107,793 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNGA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl837,896,459 - 37,969,344 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1837,896,460 - 37,968,935 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2839,950,659 - 39,971,201 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103246137
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1272,273,540 - 2,313,083 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl272,293,765 - 2,312,761 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604748,276,917 - 48,325,283 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cnga1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476118,992,384 - 19,004,202 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476118,992,372 - 19,004,247 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005391887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01038117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCLAT00000001964   ⟹   ENSCLAP00000001920
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955443639,096 - 649,606 (+)Ensembl
RefSeq Acc Id: XM_005391887   ⟹   XP_005391944
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955443615,061 - 649,693 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005391944 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001920
  ENSCLAP00000001920.1
RefSeq Acc Id: XP_005391944   ⟸   XM_005391887
- UniProtKB: A0A8C2UR09 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000001920   ⟸   ENSCLAT00000001964
Protein Domains
Cyclic nucleotide-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001415 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001964 ENTREZGENE
  ENSCLAT00000001964.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.20.5.170 UniProtKB/TrEMBL
  2.60.120.10 UniProtKB/TrEMBL
  Helix hairpin bin UniProtKB/TrEMBL
InterPro CLZ_dom UniProtKB/TrEMBL
  cNMP-bd-like UniProtKB/TrEMBL
  cNMP-bd_CS UniProtKB/TrEMBL
  cNMP-bd_dom UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  RmlC-like_jellyroll UniProtKB/TrEMBL
NCBI Gene Cnga1 ENTREZGENE
PANTHER CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A UniProtKB/TrEMBL
  PTHR45638:SF9 UniProtKB/TrEMBL
Pfam CLZ UniProtKB/TrEMBL
  cNMP_binding UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PROSITE CNMP_BINDING_1 UniProtKB/TrEMBL
  CNMP_BINDING_2 UniProtKB/TrEMBL
  CNMP_BINDING_3 UniProtKB/TrEMBL
SMART cNMP UniProtKB/TrEMBL
Superfamily-SCOP SSF51206 UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A8C2UR09 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-06-25 Cnga1  cyclic nucleotide gated channel subunit alpha 1  Cnga1  cyclic nucleotide gated channel alpha 1  Symbol and/or name change 5135510 APPROVED