Eif4ebp1 (eukaryotic translation initiation factor 4E binding protein 1) - Rat Genome Database

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Gene: Eif4ebp1 (eukaryotic translation initiation factor 4E binding protein 1) Mus musculus
Analyze
Symbol: Eif4ebp1
Name: eukaryotic translation initiation factor 4E binding protein 1
RGD ID: 733442
MGI Page MGI
Description: Enables eukaryotic initiation factor 4E binding activity. Involved in IRES-dependent translational initiation of linear mRNA. Acts upstream of or within cellular response to dexamethasone stimulus; insulin receptor signaling pathway; and negative regulation of translational initiation. Predicted to be located in cytosol. Predicted to be part of protein-containing complex. Predicted to be active in glutamatergic synapse and postsynaptic cytosol. Is expressed in several structures, including central nervous system; oocyte; pancreas tip epithelium; skeletal musculature; and thymus. Orthologous to human EIF4EBP1 (eukaryotic translation initiation factor 4E binding protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4e-bp; 4e-bp1; AA959816; eIF4E-binding protein 1; eukaryotic translation initiation factor 4E-binding protein 1; PH; PHAS-I; phosphorylated heat- and acid-stable protein regulated by insulin 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Eif4ebp1-ps1   Eif4ebp1-ps2   Gm12188  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39827,750,355 - 27,765,684 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl827,750,357 - 27,766,702 (+)EnsemblGRCm39 Ensembl
GRCm38827,260,327 - 27,275,656 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl827,260,329 - 27,276,674 (+)EnsemblGRCm38mm10GRCm38
MGSCv37828,370,799 - 28,386,128 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36828,726,338 - 28,742,604 (+)NCBIMGSCv36mm8
Celera828,750,731 - 28,766,068 (+)NCBICelera
Cytogenetic Map8A2NCBI
cM Map815.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
(S)-nicotine  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-nitropyrene  (ISO)
1-octadec-9-enoylglycero-3-phosphate  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (ISO)
2-deoxy-D-glucose  (ISO)
2-hydroxypropanoic acid  (ISO)
2-nitrofluorene  (ISO)
3,3',5-triiodo-L-thyronine  (EXP)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
3-methyladenine  (ISO)
4'-epidoxorubicin  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (EXP)
4-nonylphenol  (ISO)
5-fluorouracil  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
7-methyl-GTP  (ISO)
acetaldehyde  (ISO)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
AICA ribonucleotide  (EXP,ISO)
alachlor  (ISO)
aldehydo-D-glucose  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amino acid  (EXP,ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
antimycin A  (ISO)
antroquinonol  (ISO)
arecoline  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
azoxystrobin  (ISO)
bafilomycin A1  (ISO)
Bardoxolone methyl  (ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (EXP,ISO)
berberine  (ISO)
betulin  (ISO)
bicalutamide  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (ISO)
bortezomib  (ISO)
butan-1-ol  (ISO)
butan-2-ol  (ISO)
C.I. Natural Red 20  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calciol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
calyculin a  (ISO)
cannabidiol  (EXP,ISO)
cantharidin  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
celastrol  (ISO)
chloroquine  (ISO)
cholesterol  (ISO)
cisplatin  (ISO)
clobetasol  (EXP)
clofibrate  (EXP,ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cordycepin  (EXP)
Corynoxine B  (ISO)
coumarin  (ISO)
Cuprizon  (ISO)
curcumin  (ISO)
cyanamide  (EXP)
cycloheximide  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
cyhalothrin  (EXP)
cypermethrin  (EXP)
D-glucitol  (ISO)
D-glucose  (EXP,ISO)
dactolisib  (ISO)
daunorubicin  (ISO)
deguelin  (ISO)
deoxynivalenol  (EXP)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (ISO)
diclofenac  (EXP,ISO)
Dictamnine  (ISO)
diethylstilbestrol  (ISO)
digitoxin  (ISO)
Dihydrotanshinone I  (ISO)
dimethyl sulfoxide  (EXP)
diosgenin  (ISO)
dioxygen  (EXP,ISO)
diquat  (EXP)
dorsomorphin  (EXP,ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP,ISO)
ethylene glycol bis(2-aminoethyl)tetraacetic acid  (EXP,ISO)
everolimus  (ISO)
fenamidone  (EXP)
fenpyroximate  (ISO)
folic acid  (EXP)
folpet  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
frenolicin B  (ISO)
furan  (ISO)
glucose  (EXP,ISO)
glycidyl methacrylate  (ISO)
gossypol  (ISO)
GSK690693  (ISO)
hexadecanoic acid  (ISO)
hydrogen peroxide  (EXP,ISO)
hydroquinone  (ISO)
inulin  (EXP)
ivermectin  (ISO)
ketoconazole  (ISO)
KN-93  (ISO)
Ku-0063794  (ISO)
L-cysteine  (ISO)
L-ethionine  (ISO)
L-methionine  (ISO)
lamivudine  (ISO)
lead nitrate  (ISO)
letrozole  (ISO)
LY294002  (ISO)
manganese(II) chloride  (ISO)
mechlorethamine  (EXP)
melatonin  (ISO)
metformin  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
microcystin-LR  (ISO)
MK-2206  (ISO)
N(4)-hydroxycytidine  (EXP)
N-acetyl-L-cysteine  (EXP,ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N-nitrosourea  (ISO)
N-nitrosodimethylamine  (ISO)
N-succinylsulfathiazole  (EXP)
nefazodone  (ISO)
nickel atom  (ISO)
niclosamide  (ISO)
nicotinamide  (ISO)
nicotine  (ISO)
nicotinic acid  (ISO)
nimesulide  (ISO)
ochratoxin A  (ISO)
omeprazole  (ISO)
omipalisib  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
PD 0325901  (ISO)
perfluorobutyric acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
perhexiline  (ISO)
phenylephrine  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
phorone  (ISO)
picoxystrobin  (ISO)
pioglitazone  (ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP,ISO)
platycodin D  (ISO)
pomalidomide  (ISO)
progesterone  (ISO)
prothioconazole  (ISO)
puerarin  (ISO)
pyrimidifen  (ISO)
quercetin  (EXP,ISO)
rac-lactic acid  (ISO)
resveratrol  (EXP,ISO)
ribavirin  (ISO)
rotenone  (ISO)
rottlerin  (ISO)
SB 431542  (ISO)
selumetinib  (ISO)
Shikonin  (ISO)
simvastatin  (EXP)
sinapic acid  (EXP)
sirolimus  (EXP,ISO)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
Soman  (ISO)
sorafenib  (ISO)
stilbenoid  (ISO)
streptozocin  (ISO)
sunitinib  (ISO)
swainsonine  (EXP)
tacrolimus hydrate  (EXP)
tebufenpyrad  (ISO)
Temsirolimus  (ISO)
teriflunomide  (ISO)
testosterone  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thifluzamide  (ISO)
thioacetamide  (ISO)
thiophenes  (ISO)
thioridazine  (ISO)
Thiorphan  (ISO)
titanium dioxide  (EXP)
toluene  (ISO)
torin 1  (EXP,ISO)
Tributyltin oxide  (EXP)
trichloroethene  (EXP,ISO)
trichostatin A  (ISO)
trifluoperazine  (EXP,ISO)
triptonide  (EXP)
trovafloxacin  (EXP,ISO)
tunicamycin  (ISO)
ursolic acid  (ISO)
usnic acid  (ISO)
valproic acid  (ISO)
vanadyl sulfate  (ISO)
vancomycin  (EXP)
vandetanib  (ISO)
wortmannin  (ISO)
zearalenone  (ISO)
zidovudine  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Inhibition of Cap-initiation complexes linked to a novel mechanism of eIF4G depletion in acute myocardial ischemia. Connolly EP, etal., Cell Death Differ. 2006 Sep;13(9):1586-94. Epub 2006 Jan 27.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Activated mammalian target of rapamycin pathway in the pathogenesis of tuberous sclerosis complex renal tumors. Kenerson HL, etal., Cancer Res 2002 Oct 15;62(20):5645-50.
4. Control of PHAS-I by insulin in 3T3-L1 adipocytes. Synthesis, degradation, and phosphorylation by a rapamycin-sensitive and mitogen-activated protein kinase-independent pathway. Lin TA, etal., J Biol Chem 1995 Aug 4;270(31):18531-8.
5. Molecular mechanisms of mTOR-mediated translational control. Ma XM and Blenis J, Nat Rev Mol Cell Biol. 2009 May;10(5):307-18. Epub 2009 Apr 2.
6. Role of insulin, adipocyte hormones, and nutrient-sensing pathways in regulating fuel metabolism and energy homeostasis: a nutritional perspective of diabetes, obesity, and cancer. Marshall S Sci STKE. 2006 Aug 1;2006(346):re7.
7. MGDs mouse GO annotations MGD data from the GO Consortium
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
11. Mouse MP Annotation Import Pipeline RGD automated import pipeline
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Metformin inhibits growth and enhances radiation response of non-small cell lung cancer (NSCLC) through ATM and AMPK. Storozhuk Y, etal., Br J Cancer. 2013 May 28;108(10):2021-32. doi: 10.1038/bjc.2013.187. Epub 2013 Apr 30.
Additional References at PubMed
PMID:8889548   PMID:8939971   PMID:8975712   PMID:9301335   PMID:9395487   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11590436   PMID:11707573   PMID:12477932   PMID:12520002  
PMID:12759354   PMID:12773302   PMID:14607835   PMID:14610273   PMID:15351722   PMID:15489334   PMID:15782199   PMID:15897901   PMID:16141072   PMID:16141073   PMID:16142217   PMID:16602821  
PMID:16647090   PMID:16990847   PMID:17015619   PMID:17273556   PMID:17556672   PMID:17967808   PMID:18272964   PMID:18280804   PMID:18316032   PMID:18317950   PMID:18468454   PMID:18515545  
PMID:18554416   PMID:18668138   PMID:18799693   PMID:18955708   PMID:19175792   PMID:19209957   PMID:19244480   PMID:19255143   PMID:19364503   PMID:19574449   PMID:19603014   PMID:19834456  
PMID:19841136   PMID:19843855   PMID:19850923   PMID:19878875   PMID:20038583   PMID:20181941   PMID:20493810   PMID:20508131   PMID:20547975   PMID:20644257   PMID:20971826   PMID:21267068  
PMID:21321084   PMID:21501832   PMID:21677750   PMID:21840999   PMID:21873635   PMID:21876130   PMID:21941369   PMID:22094257   PMID:23049865   PMID:23071096   PMID:23082216   PMID:23100423  
PMID:23105104   PMID:23184952   PMID:23342106   PMID:23350942   PMID:23426372   PMID:23434932   PMID:23592839   PMID:23658533   PMID:23672244   PMID:23818585   PMID:23852387   PMID:23972597  
PMID:24129405   PMID:24206664   PMID:24218567   PMID:24553947   PMID:24627160   PMID:24713393   PMID:24857653   PMID:24895127   PMID:24931163   PMID:24945486   PMID:24948799   PMID:25145583  
PMID:25210733   PMID:25273085   PMID:25304210   PMID:25382660   PMID:25482447   PMID:25682865   PMID:25814662   PMID:25872869   PMID:26095252   PMID:26121750   PMID:26595272   PMID:26633882  
PMID:26651292   PMID:26678009   PMID:26905199   PMID:26998719   PMID:27043414   PMID:27217487   PMID:27245614   PMID:27492367   PMID:27498874   PMID:27647922   PMID:27705797   PMID:27763553  
PMID:27798115   PMID:27807348   PMID:27912058   PMID:27993979   PMID:28069738   PMID:28100332   PMID:28272965   PMID:28320871   PMID:28544394   PMID:28699639   PMID:28783046   PMID:28798047  
PMID:28811467   PMID:28880149   PMID:29453322   PMID:29587154   PMID:29617653   PMID:29712774   PMID:29975682   PMID:30008325   PMID:30081710   PMID:30733333   PMID:30894372   PMID:30927336  
PMID:31032899   PMID:31154001   PMID:31747684   PMID:31968247   PMID:32043969   PMID:32213561   PMID:32325033   PMID:32475820   PMID:32747435   PMID:32853550   PMID:33046555   PMID:33052068  
PMID:33303641   PMID:33328636   PMID:33372189   PMID:33514739   PMID:33876772   PMID:34011960   PMID:34052210   PMID:34157307   PMID:34193412   PMID:34242585   PMID:34321999   PMID:34381067  
PMID:34395439   PMID:34849602   PMID:35341793   PMID:35675781   PMID:35988140   PMID:36198274   PMID:36398408   PMID:36454675   PMID:36482253   PMID:36526657   PMID:36528027   PMID:36656901  
PMID:36897840   PMID:36996814   PMID:37145994   PMID:37812701  


Genomics

Comparative Map Data
Eif4ebp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39827,750,355 - 27,765,684 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl827,750,357 - 27,766,702 (+)EnsemblGRCm39 Ensembl
GRCm38827,260,327 - 27,275,656 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl827,260,329 - 27,276,674 (+)EnsemblGRCm38mm10GRCm38
MGSCv37828,370,799 - 28,386,128 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36828,726,338 - 28,742,604 (+)NCBIMGSCv36mm8
Celera828,750,731 - 28,766,068 (+)NCBICelera
Cytogenetic Map8A2NCBI
cM Map815.95NCBI
EIF4EBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38838,030,534 - 38,060,365 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl838,030,534 - 38,060,365 (+)EnsemblGRCh38hg38GRCh38
GRCh37837,888,052 - 37,917,883 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36838,007,177 - 38,037,040 (+)NCBINCBI36Build 36hg18NCBI36
Build 34838,007,184 - 38,037,033NCBI
Celera836,839,744 - 36,869,730 (+)NCBICelera
Cytogenetic Map8p11.23NCBI
HuRef836,422,762 - 36,452,631 (+)NCBIHuRef
CHM1_1838,089,511 - 38,119,376 (+)NCBICHM1_1
T2T-CHM13v2.0838,306,935 - 38,336,767 (+)NCBIT2T-CHM13v2.0
Eif4ebp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81671,495,457 - 71,508,845 (-)NCBIGRCr8
mRatBN7.21664,792,595 - 64,805,984 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1664,790,226 - 64,805,984 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1670,075,417 - 70,089,698 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01673,481,763 - 73,496,043 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01668,727,984 - 68,741,372 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01668,954,860 - 68,968,248 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1668,954,875 - 68,968,248 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01668,580,263 - 68,593,651 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41669,110,522 - 69,123,895 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11669,110,729 - 69,124,101 (-)NCBI
Celera1662,716,014 - 62,729,409 (-)NCBICelera
Cytogenetic Map16q12.3NCBI
Eif4ebp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546313,702,434 - 13,720,875 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546313,702,434 - 13,720,875 (+)NCBIChiLan1.0ChiLan1.0
EIF4EBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2756,597,290 - 56,623,385 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1832,314,289 - 32,340,364 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0837,336,698 - 37,362,768 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1834,513,276 - 34,539,170 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl834,513,359 - 34,538,936 (+)Ensemblpanpan1.1panPan2
EIF4EBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11627,389,850 - 27,410,154 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1627,390,181 - 27,410,110 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1627,907,070 - 27,927,375 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01629,288,782 - 29,309,298 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1629,289,113 - 29,309,320 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11627,511,040 - 27,531,340 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01628,088,513 - 28,108,833 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01628,127,776 - 28,148,089 (-)NCBIUU_Cfam_GSD_1.0
Eif4ebp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494349,999,266 - 50,015,195 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367101,446,030 - 1,461,945 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF4EBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1548,422,816 - 48,443,399 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11548,423,001 - 48,443,373 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21555,557,800 - 55,560,845 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EIF4EBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1836,063,311 - 36,092,439 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660525,902,191 - 5,931,737 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eif4ebp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247805,543,117 - 5,561,261 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247805,543,117 - 5,561,285 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

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Variants in Eif4ebp1
608 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:228
Count of miRNA genes:202
Interacting mature miRNAs:212
Transcripts:ENSMUST00000033880
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11533914Mts5_mmammary tumor susceptibility 5 (mouse)8130447432Mouse
4140978Nilac5_mnicotine induced locomotor activity 5 (mouse)Not determined8131773288Mouse
27226756Femd2_mfemur midshaft diameter 2, 5 week (mouse)8495000035067154Mouse
1301532Scc8_mcolon tumor susceptibility 8 (mouse)Not determined8721249935110107Mouse
1300906Ap8q_malcohol preference 8 QTL (mouse)Not determined8798418941984342Mouse
10412209Cypr7_mcytokine production 7 (mouse)Not determined8810320142103372Mouse
1301929Eae24_msusceptibility to experimental allergic encephalomyelitis 24 (mouse)Not determined8810320142103372Mouse
1301128Sluc20_msusceptibility to lung cancer 20 (mouse)Not determined8810320142103372Mouse
11532713Sluc42_msusceptibility to lung cancer 42 (mouse)81344721035321225Mouse
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81477316071498244Mouse
1301088Alcw6_malcohol withdrawal 6 (mouse)Not determined81550657249506729Mouse
1300912Daq19_mdirectional asymmetry QTL 19 (mouse)Not determined81550657249506729Mouse
1301298Pgia4_mproteoglycan induced arthritis 4 (mouse)Not determined81656937350569697Mouse
4142199Poats1_mpost-ovarectomy adrenal tumor susceptibility 1 (mouse)Not determined1708262628849467Mouse
1301550Fembrs2_mfemur breaking strength 2 (mouse)Not determined81832109752321225Mouse
1301160Eae14_msusceptibility to experimental allergic encephalomyelitis 14 (mouse)Not determined81945501853455150Mouse
1300603Cd8ts2_mCD8 T cell subset 2 (mouse)Not determined81945501853455150Mouse
10043974Obq30_mobesity QTL 30 (mouse)Not determined82658332260583322Mouse

Markers in Region
AA959816  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38827,275,135 - 27,275,304UniSTSGRCm38
MGSCv37828,385,607 - 28,385,776UniSTSGRCm37
Celera828,765,547 - 28,765,716UniSTS
Cytogenetic Map8A4-B1UniSTS
Whitehead/MRC_RH8311.85UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000033880   ⟹   ENSMUSP00000033880
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl827,750,357 - 27,766,702 (+)Ensembl
GRCm38.p6 Ensembl827,260,329 - 27,276,674 (+)Ensembl
RefSeq Acc Id: ENSMUST00000210959
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl827,754,442 - 27,765,526 (+)Ensembl
GRCm38.p6 Ensembl827,264,414 - 27,275,498 (+)Ensembl
RefSeq Acc Id: NM_007918   ⟹   NP_031944
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39827,750,355 - 27,765,684 (+)NCBI
GRCm38827,260,327 - 27,275,656 (+)ENTREZGENE
MGSCv37828,370,799 - 28,386,128 (+)RGD
Celera828,750,731 - 28,766,068 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_031944   ⟸   NM_007918
- UniProtKB: Q3TDS8 (UniProtKB/Swiss-Prot),   Q9CZ40 (UniProtKB/Swiss-Prot),   Q60876 (UniProtKB/Swiss-Prot),   Q3TII9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000033880   ⟸   ENSMUST00000033880

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q60876-F1-model_v2 AlphaFold Q60876 1-117 view protein structure

Promoters
RGD ID:8666817
Promoter ID:EPDNEW_M11439
Type:initiation region
Name:Eif4ebp1_1
Description:Mus musculus eukaryotic translation initiation factor 4E bindingprotein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38827,260,378 - 27,260,438EPDNEW
RGD ID:6843064
Promoter ID:MM_KWN:54058
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_007918
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36828,370,536 - 28,371,036 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:103267 AgrOrtholog
Ensembl Genes ENSMUSG00000031490 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000033880 ENTREZGENE
  ENSMUST00000033880.7 UniProtKB/Swiss-Prot
InterPro EIF4EBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13685 UniProtKB/Swiss-Prot
MGD MGI:103267 ENTREZGENE
NCBI Gene 13685 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12669:SF14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam eIF_4EBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB EIF4EBP1 RGD
PhenoGen Eif4ebp1 PhenoGen
UniProt 4EBP1_MOUSE UniProtKB/Swiss-Prot
  Q3TDS8 ENTREZGENE
  Q3TII9 ENTREZGENE, UniProtKB/TrEMBL
  Q60876 ENTREZGENE
  Q9CZ40 ENTREZGENE
UniProt Secondary Q3TDS8 UniProtKB/Swiss-Prot
  Q9CZ40 UniProtKB/Swiss-Prot