Syngr2 (synaptogyrin 2) - Rat Genome Database

Name: Syngr2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Syngr2 (synaptogyrin 2) Mus musculus

Analyze

Symbol:

Syngr2

Name:

synaptogyrin 2

RGD ID:

732041

MGI Page

MGI

Description:

Predicted to be involved in regulated exocytosis and synaptic vesicle membrane organization. Predicted to act upstream of or within protein targeting. Located in synaptic vesicle. Is expressed in several structures, including genitourinary system; heart; liver; lung; and spleen. Orthologous to human SYNGR2 (synaptogyrin 2).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cellu; cellugyrin; Cla; Clast2; synaptogyrin-2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SYNGR2 (synaptogyrin 2)	HGNC	Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Syngr2 (synaptogyrin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Syngr2 (synaptogyrin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SYNGR2 (synaptogyrin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SYNGR2 (synaptogyrin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Syngr2 (synaptogyrin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SYNGR2 (synaptogyrin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SYNGR2 (synaptogyrin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Syngr2 (synaptogyrin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Syngr2 (synaptogyrin 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SYNGR2 (synaptogyrin 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	syngr2b (synaptogyrin 2b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Danio rerio (zebrafish):	syngr2a (synaptogyrin 2a)	Alliance	DIOPT (ZFIN)
Drosophila melanogaster (fruit fly):	Syngr	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	sng-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	syngr2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	117,700,459 - 117,705,112 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	117,700,494 - 117,705,109 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	117,809,646 - 117,814,286 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	117,809,668 - 117,814,283 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	117,670,981 - 117,675,600 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	117,625,771 - 117,630,371 (+)	NCBI		MGSCv36	mm8
Celera	11	129,554,769 - 129,559,410 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	82.96	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (EXP)

(S)-nicotine (EXP)

1,2-dimethylhydrazine (EXP)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2-hydroxypropanoic acid (ISO)

3,3',4,4'-tetrachlorobiphenyl (EXP)

4,4'-sulfonyldiphenol (EXP)

6-propyl-2-thiouracil (ISO)

aconitine (ISO)

all-trans-retinoic acid (ISO)

Allylamine (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

chlorpyrifos (EXP)

cisplatin (ISO)

clofibrate (EXP)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

Cuprizon (ISO)

dibutyl phthalate (ISO)

dioxygen (EXP)

doxorubicin (ISO)

entinostat (ISO)

epoxiconazole (EXP)

fenthion (EXP)

folic acid (EXP)

FR900359 (ISO)

fulvestrant (ISO)

ivermectin (ISO)

N-methyl-4-phenylpyridinium (ISO)

nefazodone (ISO)

nicotine (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (EXP)

potassium chromate (ISO)

rac-lactic acid (ISO)

Soman (ISO)

sulforaphane (EXP)

titanium dioxide (EXP)

triclosan (ISO)

triptonide (EXP)

valproic acid (ISO)

vancomycin (EXP)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein targeting (ISO)

regulated exocytosis (ISO)

synaptic vesicle membrane organization (ISO)

Cellular Component

cytoplasmic vesicle (IEA)

membrane (ISO)

mitochondrion (ISO)

neuromuscular junction (IBA)

nucleus (ISO)

synapse (IEA)

synaptic vesicle (IDA,ISO)

synaptic vesicle membrane (IBA,ISO)

Molecular Function

protein binding (IPI)

References

References - curated

#	Reference Title	Reference Citation
1.	MGDs mouse GO annotations	MGD data from the GO Consortium
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9760194	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:12928441	PMID:15489334	PMID:15782199	PMID:16141072
PMID:16141073	PMID:19076072	PMID:21267068	PMID:21677750	PMID:21873635	PMID:26629404

Genomics

Comparative Map Data

Syngr2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	117,700,459 - 117,705,112 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	117,700,494 - 117,705,109 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	117,809,646 - 117,814,286 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	117,809,668 - 117,814,283 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	117,670,981 - 117,675,600 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	117,625,771 - 117,630,371 (+)	NCBI		MGSCv36	mm8
Celera	11	129,554,769 - 129,559,410 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	82.96	NCBI

SYNGR2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	78,168,545 - 78,172,964 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	78,168,581 - 78,173,527 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	76,164,626 - 76,169,045 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	73,676,266 - 73,680,604 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	73,676,265 - 73,680,604	NCBI
Celera	17	72,761,072 - 72,765,440 (+)	NCBI		Celera
Cytogenetic Map	17	q25.3	NCBI
HuRef	17	71,588,828 - 71,593,141 (+)	NCBI		HuRef
CHM1_1	17	76,229,214 - 76,233,546 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	79,062,641 - 79,067,058 (+)	NCBI		T2T-CHM13v2.0

Syngr2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	103,528,599 - 103,533,167 (+)	NCBI		GRCr8
mRatBN7.2	10	103,029,903 - 103,034,473 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	103,029,917 - 103,034,473 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	108,131,052 - 108,135,567 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	107,594,163 - 107,598,678 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	102,950,723 - 102,955,261 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	106,812,740 - 106,816,675 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	106,812,739 - 106,816,675 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	106,451,965 - 106,455,900 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	10	101,589,921 - 101,593,857 (+)	NCBI		Celera
Cytogenetic Map	10	q32.2	NCBI

Syngr2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	4,391,587 - 4,393,476 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955506	4,391,587 - 4,393,475 (-)	NCBI	ChiLan1.0	ChiLan1.0

SYNGR2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	94,219,313 - 94,223,536 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	99,047,987 - 99,052,216 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	72,245,844 - 72,250,031 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	77,800,214 - 77,802,541 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	77,800,484 - 77,802,541 (+)	Ensembl	panpan1.1		panPan2

SYNGR2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	2,972,561 - 2,976,775 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	3,656,078 - 3,660,221 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	3,650,453 - 3,654,639 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	3,650,453 - 3,656,924 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	3,673,474 - 3,677,612 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	3,797,676 - 3,801,820 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	3,879,107 - 3,883,250 (-)	NCBI		UU_Cfam_GSD_1.0

Syngr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	3,628,065 - 3,631,182 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	2,775,144 - 2,783,892 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936594	2,775,144 - 2,783,894 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SYNGR2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	3,795,892 - 3,802,913 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	3,795,888 - 3,799,663 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SYNGR2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	70,180,139 - 70,184,694 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	70,180,093 - 70,183,917 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	41,288,935 - 41,293,545 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Syngr2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	7,680,465 - 7,684,164 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624801	7,680,551 - 7,684,166 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Syngr2
145 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1821
Count of miRNA genes:	508
Interacting mature miRNAs:	621
Transcripts:	ENSMUST00000026649, ENSMUST00000120928, ENSMUST00000143852, ENSMUST00000175737, ENSMUST00000176936, ENSMUST00000177131, ENSMUST00000177241
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
39128214	Lwq20_m	liver weight QTL 20 (mouse)					11	12268637	118022724	Mouse
14747003	Mancz9_m	mandible centroid size 9 (mouse)					11	85844911	119844911	Mouse
15039374	Adip29_m	adiposity 29 (mouse)					11	86608320	120608320	Mouse
15039376	Bw42_m	body weight QTL 42 (mouse)					11	86608320	120608320	Mouse
15014785	Mvlq1_m	macrovesicular liver lesion QTL 1 (mouse)					11	86608320	120608320	Mouse
27226789	Feml16_m	femur length 16, 10 week (mouse)					11	87490826	121873369	Mouse
10044007	Hbnr14_m	Heligmosomoides bakeri nematode resistance 14 (mouse)			Not determined		11	87502600	121502698	Mouse
11251723	Ewc5_m	ethanol withdrawal and consumption 5 (mouse)					11	89869251	121973369	Mouse
1558753	Ath19_m	atherosclerosis 19 (mouse)			Not determined		11	91604608	121973369	Mouse
1302034	Pkccl_m	protein kinase C content in lungs (mouse)			Not determined		11	91604608	121973369	Mouse
1301095	El6_m	epilepsy 6 (mouse)			Not determined		11	93229183	121973369	Mouse
4141939	Pregq2_m	pregnancy QTL 2 (mouse)			Not determined		11	94063779	118022724	Mouse
27226731	Tibmd4_m	tibia midshaft diameter 4, 10 week (mouse)					11	94190826	118890826	Mouse
4141465	Dbm2_m	diabetes modifier 2 (mouse)			Not determined			94437183	118022724	Mouse
1301958	Alcp18_m	alcohol preference locus 18 (mouse)			Not determined		11	95403965	121973369	Mouse
1300944	Alcp20_m	alcohol preference locus 20 (mouse)			Not determined		11	95403965	121973369	Mouse
1300962	Cd8mts4_m	CD8 memory T cell subset 4 (mouse)			Not determined		11	96137674	121973369	Mouse
1301057	Nidd4_m	non-insulin-dependent diabetes mellitus 4 (mouse)			Not determined		11	96810136	121973369	Mouse
1301983	Berr2_m	berghei resistance locus 2 (mouse)			Not determined		11	98352609	121973369	Mouse
10043976	Obq33_m	obesity QTL 33 (mouse)			Not determined		11	98500469	121973369	Mouse
10044001	Alcw8_m	alcohol withdrawal 8 (mouse)			Not determined		11	99254187	121973369	Mouse
11553867	Stmm5_m	skin tumor modifier of MSM 5 (mouse)					11	100058103	121973369	Mouse
11341721	Rvfs2_m	Rift Valley fever susceptibility 2 (mouse)					11	100254186	120887165	Mouse
1301012	Vispl_m	visual placing (mouse)			Not determined		11	101022590	121973369	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_009304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030245751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF151985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF364049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ002307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK150234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK157343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK170681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK180145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK185198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK189361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK205644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK206414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK207465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK208001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK208216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK209714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK214806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK215405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK216027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK218231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK219628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK220017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK220066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL645856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BB368123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC004829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY146297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000026649 ⟹ ENSMUSP00000026649

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	117,700,494 - 117,705,109 (+)	Ensembl
GRCm38.p6 Ensembl	11	117,809,668 - 117,814,283 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000120928 ⟹ ENSMUSP00000113941

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	117,700,522 - 117,705,109 (+)	Ensembl
GRCm38.p6 Ensembl	11	117,809,696 - 117,814,283 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000143852 ⟹ ENSMUSP00000135529

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	117,703,084 - 117,703,944 (+)	Ensembl
GRCm38.p6 Ensembl	11	117,812,258 - 117,813,118 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000175737 ⟹ ENSMUSP00000134879

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	117,700,538 - 117,704,558 (+)	Ensembl
GRCm38.p6 Ensembl	11	117,809,712 - 117,813,732 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000176936

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	117,703,817 - 117,704,238 (+)	Ensembl
GRCm38.p6 Ensembl	11	117,812,991 - 117,813,412 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000177131 ⟹ ENSMUSP00000134789

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	117,700,509 - 117,704,652 (+)	Ensembl
GRCm38.p6 Ensembl	11	117,809,683 - 117,813,826 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000177241 ⟹ ENSMUSP00000135171

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	117,700,519 - 117,704,301 (+)	Ensembl
GRCm38.p6 Ensembl	11	117,809,693 - 117,813,475 (+)	Ensembl

RefSeq Acc Id:

NM_009304 ⟹ NP_033330

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	117,700,493 - 117,705,112 (+)	NCBI
GRCm38	11	117,809,667 - 117,814,286 (+)	ENTREZGENE
MGSCv37	11	117,670,981 - 117,675,600 (+)	RGD
Celera	11	129,554,769 - 129,559,410 (+)	RGD
cM Map	11		ENTREZGENE

Sequence:

show sequence

TAGTTCCCGGCCATCCGCGGCTCGGTGGCGAAAGCGACATGGAGAGCGGGGCCTATGGCGCGGC
CAACGCGGGCGGCTCCTTCGACCTGCGGCGCTTCCTGTCTCAGCCTCAGGTGGTGACGCGCCTC
GTGAGCATGGTCTTGGCCTTGATCGTGTTCTCCTGCATCTTCGGCGAGGGCTACACCAACATTC
ACACATCTGATCAACTATACTGTGTGTTCAACCAGAATGAGGATGCCTGCCGCTACGGCAGCGC
CATCGGGGTGCTGGCCTTCCTGGCCTCAGCCTTCTTCCTTGTGGTCGATGCCTTCTTCTCCCAG
ATAAGCAATGCCACTGACCGAAAGTACCTGGTCATTGGCGACCTGCTCTTCTCAGCTCTCTGGA
CCTTCCTGTGGTTTGTTGGTTTCTGCTTCCTGACCAACCAGTGGGCAGCCACCAAACCTCAAGA
TGTCCGGGTGGGTGCGGACTCAGCTCGGGCAGCCATCACCTTCAGCTTCTTCTCCATCTTTTCC
TGGGGTGTGCTGGCTTCCCTGGCCTACCAGCGCTACAAGGCTGGAGTGGATGCCTTCATTCAGA
ACTACGTGGATCCCACCCCGGATCCCAACACAGCCTATGCCTCCTACCCTAGTGCCTCCGTGGA
AAACTACCAGCAGCCGCCCTTCACCCAGAATGTGGAGACTACTGAGGGCTACCAGCCTCCCCCT
GTGTACTGAGCAGCCAGGGACAAGAAGGCAGGGAAGGGGTGGTTGGGAGAGGGCCGCCCCTCTA
CCCTGGACTTCTCTCAAGGGTTGCTACTCACAATGTAGTCCCTTGCCTGTTACAGTTGACAGCC
AAAGAGTCCACGCCTTTCTGCCTCCCAGCTGCAGACAGAGCACACCTGAAGTGCCCATGCCCAG
CTGGGCTTCGCCGCCGCCCACCCAATCCTCAAGGGCATTTTTGAGATGGTTTTGACTAGATCTT
TTTATCCCCCACCATAGTACTGTAGATAGGACCCAGGGCTTGGATTTGCTTAACCAGCGCAGCC
ATCCAGCTGTGTGCCCAGCTCCTTGTTGCTTTTAGTAACCCCGATCCCCTTCTCAGAGAGCCAG
AAGCAGGTGCCTGTTAGTGCTACCATGTTTTTGACCCATGCTAGTTTCTCCACTGGGAGCCCCA
ACTCTTTCCCCAAAGCCAAGCTTGGGGATCCTCGTGCCTGTCTCCCCACGTCCTCACTCAGGTT
CAGGAGCCAGCTCTCTGCTGTGTCTTCTGGGGTCACCACTGTGCCAATTGTCCCCAGGCTGCCT
GCCAACCGTGGGACAGGCAGAGGGACAAGATGCCACTTCCTTCTTTCTCCCGCTCCTGGCAGGA
GGGACAGGATTTGCCTGGAGATAACACCCAGCTTTATGTAAATACTACCAAGCAGCGGTTAGAT
ACTAGTGGGGAGGGCAGGAACCCCTGCACTGAATGTATTGGAGACTGGTGGGGATGGCCCTGCC
CTCAGATTCTATAGACTAGTTTGGAGATGGAATAAACGGTTTTTCTCAGCGT

hide sequence

RefSeq Acc Id:

XM_030245751 ⟹ XP_030101611

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	117,700,459 - 117,705,109 (+)	NCBI
GRCm38	11	117,809,646 - 117,814,283 (+)	NCBI

Sequence:

show sequence

ACCCGCCCCCGTGGGCGGGGCGGGGCAATCCGGCTAGTTCCCGGCCATCCGCGGCTCGGTGGCG
AAAGCGACATGGAGAGCGGGGCCTATGGCGCGGCCAACGCGGGCGGCTCCTTCGACCTGCGGCG
CTTCCTGTCTCAGCCTCAGGTGGTGACGCGCCTCGTGAGCATGGTCTTGGCCTTGATCGTGTTC
TCCTGCATCTTCGGCGAGGGCTACACCAACATTCACACATCTGATCAACTATACTGTGTGTTCA
ACCAGAATGAGGATGCCTGCCGCTACGGCAGCGCCATCGGGGTGCTGGCCTTCCTGGCCTCAGC
CTTCTTCCTTGTGGTCGATGCCTTCTTCTCCCAGATAAGCAATGCCACTGACCGAAAGTACCTG
GTCATTGGCGACCTGCTCTTCTCAGGGTGTGCTGGCTTCCCTGGCCTACCAGCGCTACAAGGCT
GGAGTGGATGCCTTCATTCAGAACTACGTGGATCCCACCCCGGATCCCAACACAGCCTATGCCT
CCTACCCTAGTGCCTCCGTGGAAAACTACCAGCAGCCGCCCTTCACCCAGAATGTGGAGACTAC
TGAGGGCTACCAGCCTCCCCCTGTGTACTGAGCAGCCAGGGACAAGAAGGCAGGGAAGGGGTGG
TTGGGAGAGGGCCGCCCCTCTACCCTGGACTTCTCTCAAGGGTTGCTACTCACAATGTAGTCCC
TTGCCTGTTACAGTTGACAGCCAAAGAGTCCACGCCTTTCTGCCTCCCAGCTGCAGACAGAGCA
CACCTGAAGTGCCCATGCCCAGCTGGGCTTCGCCGCCGCCCACCCAATCCTCAAGGGCATTTTT
GAGATGGTTTTGACTAGATCTTTTTATCCCCCACCATAGTACTGTAGATAGGACCCAGGGCTTG
GATTTGCTTAACCAGCGCAGCCATCCAGCTGTGTGCCCAGCTCCTTGTTGCTTTTAGTAACCCC
GATCCCCTTCTCAGAGAGCCAGAAGCAGGTGCCTGTTAGTGCTACCATGTTTTTGACCCATGCT
AGTTTCTCCACTGGGAGCCCCAACTCTTTCCCCAAAGCCAAGCTTGGGGATCCTCGTGCCTGTC
TCCCCACGTCCTCACTCAGGTTCAGGAGCCAGCTCTCTGCTGTGTCTTCTGGGGTCACCACTGT
GCCAATTGTCCCCAGGCTGCCTGCCAACCGTGGGACAGGCAGAGGGACAAGATGCCACTTCCTT
CTTTCTCCCGCTCCTGGCAGGAGGGACAGGATTTGCCTGGAGATAACACCCAGCTTTATGTAAA
TACTACCAAGCAGCGGTTAGATACTAGTGGGGAGGGCAGGAACCCCTGCACTGAATGTATTGGA
GACTGGTGGGGATGGCCCTGCCCTCAGATTCTATAGACTAGTTTGGAGATGGAATAAACGGTTT
TTCTCAG

hide sequence

Protein Sequences


Protein RefSeqs	NP_033330	(Get FASTA)	NCBI Sequence Viewer
	XP_030101611	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD38046	(Get FASTA)	NCBI Sequence Viewer
	AAH04829	(Get FASTA)	NCBI Sequence Viewer
	AAK50857	(Get FASTA)	NCBI Sequence Viewer
	BAE29399	(Get FASTA)	NCBI Sequence Viewer
	BAE41954	(Get FASTA)	NCBI Sequence Viewer
	CAA05324	(Get FASTA)	NCBI Sequence Viewer
	EDL34632	(Get FASTA)	NCBI Sequence Viewer
	EDL34633	(Get FASTA)	NCBI Sequence Viewer
	EDL34634	(Get FASTA)	NCBI Sequence Viewer
	EDL34635	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000026649
	ENSMUSP00000026649.8
	ENSMUSP00000113941.2
	ENSMUSP00000134789.2
	ENSMUSP00000134879
	ENSMUSP00000134879.2
	ENSMUSP00000135171.2
	ENSMUSP00000135529.2
GenBank Protein	O55101	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_033330 ⟸ NM_009304
- UniProtKB:	Q8C225 (UniProtKB/Swiss-Prot), Q3TCK2 (UniProtKB/Swiss-Prot), Q99K83 (UniProtKB/Swiss-Prot), O55101 (UniProtKB/Swiss-Prot), B0QZP8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESGAYGAANAGGSFDLRRFLSQPQVVTRLVSMVLALIVFSCIFGEGYTNIHTSDQLYCVFNQN EDACRYGSAIGVLAFLASAFFLVVDAFFSQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTN QWAATKPQDVRVGADSARAAITFSFFSIFSWGVLASLAYQRYKAGVDAFIQNYVDPTPDPNTAY ASYPSASVENYQQPPFTQNVETTEGYQPPPVY hide sequence

RefSeq Acc Id:	XP_030101611 ⟸ XM_030245751
- Peptide Label:	isoform X1
- UniProtKB:	H3BJ78 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSMUSP00000026649 ⟸ ENSMUST00000026649

RefSeq Acc Id:

ENSMUSP00000134789 ⟸ ENSMUST00000177131

RefSeq Acc Id:

ENSMUSP00000135171 ⟸ ENSMUST00000177241

RefSeq Acc Id:

ENSMUSP00000135529 ⟸ ENSMUST00000143852

RefSeq Acc Id:

ENSMUSP00000113941 ⟸ ENSMUST00000120928

RefSeq Acc Id:

ENSMUSP00000134879 ⟸ ENSMUST00000175737

Protein Domains

MARVEL

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O55101-F1-model_v2	AlphaFold	O55101	1-224	view protein structure

Promoters

RGD ID:

6822288

Promoter ID:

MM_KWN:10745

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, ES_Cell, Kidney, Liver, Lung, MEF_B4, Spleen

Transcripts:

ENSMUST00000120928, NM_009304, UC007MNW.1, UC007MNY.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	117,670,849 - 117,671,349 (+)	MPROMDB

RGD ID:

6822265

Promoter ID:

MM_KWN:10746

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Liver

Transcripts:

OTTMUST00000007956

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	117,673,641 - 117,674,141 (+)	MPROMDB

RGD ID:

8677530

Promoter ID:

EPDNEW_M16796

Type:

initiation region

Name:

Syngr2_1

Description:

Mus musculus synaptogyrin 2 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	117,809,679 - 117,809,739	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1328324	AgrOrtholog
Ensembl Genes	ENSMUSG00000048277	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000026649	ENTREZGENE
	ENSMUST00000026649.14	UniProtKB/Swiss-Prot
	ENSMUST00000120928.2	UniProtKB/TrEMBL
	ENSMUST00000143852.2	UniProtKB/TrEMBL
	ENSMUST00000175737	ENTREZGENE
	ENSMUST00000175737.2	UniProtKB/TrEMBL
	ENSMUST00000177131.8	UniProtKB/TrEMBL
	ENSMUST00000177241.2	UniProtKB/TrEMBL
InterPro	Marvel	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Synaptogyrin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:20973	UniProtKB/Swiss-Prot
MGD	MGI:1328324	ENTREZGENE
NCBI Gene	20973	ENTREZGENE
PANTHER	PTHR10838	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SYNAPTOGYRIN-2 LIKE PROTEIN-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	MARVEL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Syngr2	PhenoGen
PIRSF	Synaptogyrin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	MARVEL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROKAR_LIPOPROTEIN	UniProtKB/TrEMBL
UniProt	B0QZP8	ENTREZGENE, UniProtKB/TrEMBL
	H3BIZ8_MOUSE	UniProtKB/TrEMBL
	H3BJ78	ENTREZGENE, UniProtKB/TrEMBL
	H3BJY1_MOUSE	UniProtKB/TrEMBL
	H3BKU5_MOUSE	UniProtKB/TrEMBL
	O55101	ENTREZGENE
	Q3TCK2	ENTREZGENE
	Q8C225	ENTREZGENE
	Q99K83	ENTREZGENE
	SNG2_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	Q3TCK2	UniProtKB/Swiss-Prot
	Q8C225	UniProtKB/Swiss-Prot
	Q99K83	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar