SYNGR2 (synaptogyrin 2) - Rat Genome Database

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Gene: SYNGR2 (synaptogyrin 2) Sus scrofa
Analyze
Symbol: SYNGR2
Name: synaptogyrin 2
RGD ID: 14081525
Description: INVOLVED IN protein targeting (ortholog); regulated exocytosis (ortholog); synaptic vesicle membrane organization (ortholog); FOUND IN mitochondrion (ortholog); nucleus (ortholog); synaptic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: synaptogyrin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl123,795,892 - 3,802,913 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1123,795,888 - 3,799,663 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202   PMID:30379811  


Genomics

Comparative Map Data
SYNGR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl123,795,892 - 3,802,913 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1123,795,888 - 3,799,663 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SYNGR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381778,168,545 - 78,172,964 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1778,168,581 - 78,173,527 (+)EnsemblGRCh38hg38GRCh38
GRCh371776,164,626 - 76,169,045 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361773,676,266 - 73,680,604 (+)NCBINCBI36Build 36hg18NCBI36
Build 341773,676,265 - 73,680,604NCBI
Celera1772,761,072 - 72,765,440 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1771,588,828 - 71,593,141 (+)NCBIHuRef
CHM1_11776,229,214 - 76,233,546 (+)NCBICHM1_1
T2T-CHM13v2.01779,062,641 - 79,067,058 (+)NCBIT2T-CHM13v2.0
Syngr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911117,700,459 - 117,705,112 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11117,700,494 - 117,705,109 (+)EnsemblGRCm39 Ensembl
GRCm3811117,809,646 - 117,814,286 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11117,809,668 - 117,814,283 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711117,670,981 - 117,675,600 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611117,625,771 - 117,630,371 (+)NCBIMGSCv36mm8
Celera11129,554,769 - 129,559,410 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1182.96NCBI
Syngr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810103,528,599 - 103,533,167 (+)NCBIGRCr8
mRatBN7.210103,029,903 - 103,034,473 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10103,029,917 - 103,034,473 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10108,131,052 - 108,135,567 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010107,594,163 - 107,598,678 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010102,950,723 - 102,955,261 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010106,812,740 - 106,816,675 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10106,812,739 - 106,816,675 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010106,451,965 - 106,455,900 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10101,589,921 - 101,593,857 (+)NCBICelera
Cytogenetic Map10q32.2NCBI
Syngr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555064,391,587 - 4,393,476 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555064,391,587 - 4,393,475 (-)NCBIChiLan1.0ChiLan1.0
SYNGR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21994,219,313 - 94,223,536 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11799,047,987 - 99,052,216 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01772,245,844 - 72,250,031 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11777,800,214 - 77,802,541 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1777,800,484 - 77,802,541 (+)Ensemblpanpan1.1panPan2
SYNGR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.192,972,561 - 2,976,775 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha93,656,078 - 3,660,221 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.093,650,453 - 3,654,639 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl93,650,453 - 3,656,924 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.193,673,474 - 3,677,612 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.093,797,676 - 3,801,820 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.093,879,107 - 3,883,250 (-)NCBIUU_Cfam_GSD_1.0
Syngr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056023,628,065 - 3,631,182 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365942,775,144 - 2,783,892 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365942,775,144 - 2,783,894 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNGR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11670,180,139 - 70,184,694 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1670,180,093 - 70,183,917 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607741,288,935 - 41,293,545 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syngr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248017,680,465 - 7,684,164 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248017,680,551 - 7,684,166 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SYNGR2
54 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 2 1 4 2 2 1 3
Below cutoff 8 3 1 1 11 2 1

Sequence


RefSeq Acc Id: ENSSSCT00000042330   ⟹   ENSSSCP00000041695
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl123,795,893 - 3,799,668 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000082161   ⟹   ENSSSCP00000062202
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl123,795,892 - 3,802,913 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000087581   ⟹   ENSSSCP00000060110
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl123,795,896 - 3,801,753 (-)Ensembl
RefSeq Acc Id: XM_021066554   ⟹   XP_020922213
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1123,795,888 - 3,799,663 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020922213   ⟸   XM_021066554
- UniProtKB: A0A287ACY5 (UniProtKB/TrEMBL),   A0A8D1PWV0 (UniProtKB/TrEMBL),   A0A4X1UQJ6 (UniProtKB/TrEMBL),   M3UZ93 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000041695   ⟸   ENSSSCT00000042330
RefSeq Acc Id: ENSSSCP00000062202   ⟸   ENSSSCT00000082161
RefSeq Acc Id: ENSSSCP00000060110   ⟸   ENSSSCT00000087581
Protein Domains
MARVEL


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031600 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025053860 UniProtKB/TrEMBL
  ENSSSCG00030008531 UniProtKB/TrEMBL
  ENSSSCG00035043589 UniProtKB/TrEMBL
  ENSSSCG00040003815 UniProtKB/TrEMBL
  ENSSSCG00045033139 UniProtKB/TrEMBL
  ENSSSCG00050050212 UniProtKB/TrEMBL
  ENSSSCG00055006763 UniProtKB/TrEMBL
  ENSSSCG00060055225 UniProtKB/TrEMBL
  ENSSSCG00065003210 UniProtKB/TrEMBL
  ENSSSCG00070019173 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000042330 ENTREZGENE
  ENSSSCT00000042330.3 UniProtKB/TrEMBL
  ENSSSCT00000082161.2 UniProtKB/TrEMBL
  ENSSSCT00000087581.2 UniProtKB/TrEMBL
  ENSSSCT00025073714.1 UniProtKB/TrEMBL
  ENSSSCT00025073989.1 UniProtKB/TrEMBL
  ENSSSCT00030011618.1 UniProtKB/TrEMBL
  ENSSSCT00030011642.1 UniProtKB/TrEMBL
  ENSSSCT00030011662.1 UniProtKB/TrEMBL
  ENSSSCT00035057919.1 UniProtKB/TrEMBL
  ENSSSCT00035057926.1 UniProtKB/TrEMBL
  ENSSSCT00035057935.1 UniProtKB/TrEMBL
  ENSSSCT00040004802.1 UniProtKB/TrEMBL
  ENSSSCT00040004820.1 UniProtKB/TrEMBL
  ENSSSCT00045056607.1 UniProtKB/TrEMBL
  ENSSSCT00045056656.1 UniProtKB/TrEMBL
  ENSSSCT00050068320.1 UniProtKB/TrEMBL
  ENSSSCT00050068333.1 UniProtKB/TrEMBL
  ENSSSCT00050068343.1 UniProtKB/TrEMBL
  ENSSSCT00055013080.1 UniProtKB/TrEMBL
  ENSSSCT00055013117.1 UniProtKB/TrEMBL
  ENSSSCT00060075213.1 UniProtKB/TrEMBL
  ENSSSCT00060075221.1 UniProtKB/TrEMBL
  ENSSSCT00060075227.1 UniProtKB/TrEMBL
  ENSSSCT00065004289.1 UniProtKB/TrEMBL
  ENSSSCT00065004295.1 UniProtKB/TrEMBL
  ENSSSCT00070037863.1 UniProtKB/TrEMBL
InterPro Marvel UniProtKB/TrEMBL
  Synaptogyrin UniProtKB/TrEMBL
NCBI Gene SYNGR2 ENTREZGENE
PANTHER PTHR10838 UniProtKB/TrEMBL
  SYNAPTOGYRIN-2 LIKE PROTEIN-RELATED UniProtKB/TrEMBL
Pfam MARVEL UniProtKB/TrEMBL
PIRSF Synaptogyrin UniProtKB/TrEMBL
PROSITE MARVEL UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt A0A287ACY5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UQJ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QDI0_PIG UniProtKB/TrEMBL
  A0A5G2QVK4_PIG UniProtKB/TrEMBL
  A0A8D0VF42_PIG UniProtKB/TrEMBL
  A0A8D1CVF3_PIG UniProtKB/TrEMBL
  A0A8D1PWV0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PXD7_PIG UniProtKB/TrEMBL
  A0A8D1X7C0_PIG UniProtKB/TrEMBL
  M3UZ93 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:110651 ENTREZGENE