SYNGR2 (synaptogyrin 2) - Rat Genome Database

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Gene: SYNGR2 (synaptogyrin 2) Homo sapiens
Analyze
Symbol: SYNGR2
Name: synaptogyrin 2
RGD ID: 732040
HGNC Page HGNC:11499
Description: Predicted to be involved in regulated exocytosis and synaptic vesicle membrane organization. Predicted to act upstream of or within protein targeting. Located in extracellular exosome.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: cellugyrin; MGC102914; synaptogyrin-2
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: SYNGR2P1   SYNGR2P2  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381778,168,545 - 78,172,964 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1778,168,581 - 78,173,527 (+)EnsemblGRCh38hg38GRCh38
GRCh371776,164,626 - 76,169,045 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361773,676,266 - 73,680,604 (+)NCBINCBI36Build 36hg18NCBI36
Build 341773,676,265 - 73,680,604NCBI
Celera1772,761,072 - 72,765,440 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1771,588,828 - 71,593,141 (+)NCBIHuRef
CHM1_11776,229,214 - 76,233,546 (+)NCBICHM1_1
T2T-CHM13v2.01779,062,641 - 79,067,058 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9446595   PMID:9760194   PMID:12477932   PMID:12975309   PMID:15489334   PMID:17255364   PMID:20458337   PMID:21516116   PMID:21873635   PMID:23376485   PMID:25416956  
PMID:26186194   PMID:27226560   PMID:28298427   PMID:28514442   PMID:29360040   PMID:29509190   PMID:30097533   PMID:31527615   PMID:32687490   PMID:32941674   PMID:33144569   PMID:33545068  
PMID:33729478   PMID:33961781   PMID:34186245   PMID:34795231   PMID:35241646   PMID:36114006   PMID:37170221   PMID:37616343   PMID:37827155  


Genomics

Comparative Map Data
SYNGR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381778,168,545 - 78,172,964 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1778,168,581 - 78,173,527 (+)EnsemblGRCh38hg38GRCh38
GRCh371776,164,626 - 76,169,045 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361773,676,266 - 73,680,604 (+)NCBINCBI36Build 36hg18NCBI36
Build 341773,676,265 - 73,680,604NCBI
Celera1772,761,072 - 72,765,440 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1771,588,828 - 71,593,141 (+)NCBIHuRef
CHM1_11776,229,214 - 76,233,546 (+)NCBICHM1_1
T2T-CHM13v2.01779,062,641 - 79,067,058 (+)NCBIT2T-CHM13v2.0
Syngr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911117,700,459 - 117,705,112 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11117,700,494 - 117,705,109 (+)EnsemblGRCm39 Ensembl
GRCm3811117,809,646 - 117,814,286 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11117,809,668 - 117,814,283 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711117,670,981 - 117,675,600 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611117,625,771 - 117,630,371 (+)NCBIMGSCv36mm8
Celera11129,554,769 - 129,559,410 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1182.96NCBI
Syngr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810103,528,599 - 103,533,167 (+)NCBIGRCr8
mRatBN7.210103,029,903 - 103,034,473 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10103,029,917 - 103,034,473 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10108,131,052 - 108,135,567 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010107,594,163 - 107,598,678 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010102,950,723 - 102,955,261 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010106,812,740 - 106,816,675 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10106,812,739 - 106,816,675 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010106,451,965 - 106,455,900 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10101,589,921 - 101,593,857 (+)NCBICelera
Cytogenetic Map10q32.2NCBI
Syngr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555064,391,587 - 4,393,476 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555064,391,587 - 4,393,475 (-)NCBIChiLan1.0ChiLan1.0
SYNGR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21994,219,313 - 94,223,536 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11799,047,987 - 99,052,216 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01772,245,844 - 72,250,031 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11777,800,214 - 77,802,541 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1777,800,484 - 77,802,541 (+)Ensemblpanpan1.1panPan2
SYNGR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.192,972,561 - 2,976,775 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha93,656,078 - 3,660,221 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.093,650,453 - 3,654,639 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl93,650,453 - 3,656,924 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.193,673,474 - 3,677,612 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.093,797,676 - 3,801,820 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.093,879,107 - 3,883,250 (-)NCBIUU_Cfam_GSD_1.0
Syngr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056023,628,065 - 3,631,182 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365942,775,144 - 2,783,892 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365942,775,144 - 2,783,894 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNGR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl123,795,892 - 3,802,913 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1123,795,888 - 3,799,663 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SYNGR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11670,180,139 - 70,184,694 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1670,180,093 - 70,183,917 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607741,288,935 - 41,293,545 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syngr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248017,680,465 - 7,684,164 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248017,680,551 - 7,684,166 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SYNGR2
11 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17q25.3(chr17:78092236-83086677)x3 copy number gain See cases [RCV000050685] Chr17:78092236..83086677 [GRCh38]
Chr17:76088317..81044553 [GRCh37]
Chr17:73599912..78637842 [NCBI36]
Chr17:17q25.3		 pathogenic
GRCh38/hg38 17q24.3-25.3(chr17:69209079-83086677)x3 copy number gain See cases [RCV000052486] Chr17:69209079..83086677 [GRCh38]
Chr17:67205220..81044553 [GRCh37]
Chr17:64716815..78637842 [NCBI36]
Chr17:17q24.3-25.3		 pathogenic
GRCh38/hg38 17q23.2-25.3(chr17:36449220-83086677)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|See cases [RCV000052483] Chr17:36449220..83086677 [GRCh38]
Chr17:58617905..81044553 [GRCh37]
Chr17:55972687..78637842 [NCBI36]
Chr17:17q23.2-25.3		 pathogenic
GRCh38/hg38 17q25.3(chr17:78092356-78444214)x1 copy number loss See cases [RCV000139522] Chr17:78092356..78444214 [GRCh38]
Chr17:76088437..76440296 [GRCh37]
Chr17:73600032..73951891 [NCBI36]
Chr17:17q25.3		 likely benign
GRCh38/hg38 17q24.3-25.3(chr17:69916435-83102552)x3 copy number gain See cases [RCV000143342] Chr17:69916435..83102552 [GRCh38]
Chr17:67912576..81048189 [GRCh37]
Chr17:65424171..78653717 [NCBI36]
Chr17:17q24.3-25.3		 pathogenic
NM_004710.7(SYNGR2):c.26C>G (p.Ala9Gly) single nucleotide variant Inborn genetic diseases [RCV003244834] Chr17:78168642 [GRCh38]
Chr17:76164723 [GRCh37]
Chr17:17q25.3		 uncertain significance
GRCh37/hg19 17q25.1-25.3(chr17:73951701-81041938)x3 copy number gain See cases [RCV000447539] Chr17:73951701..81041938 [GRCh37]
Chr17:17q25.1-25.3		 pathogenic
GRCh37/hg19 17q24.2-25.3(chr17:64241326-81041938)x3 copy number gain See cases [RCV000447577] Chr17:64241326..81041938 [GRCh37]
Chr17:17q24.2-25.3		 pathogenic
GRCh37/hg19 17q21.31-25.3(chr17:42580684-81085615)x3 copy number gain See cases [RCV000447823] Chr17:42580684..81085615 [GRCh37]
Chr17:17q21.31-25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17q25.1-25.3(chr17:73951701-81041938)x3 copy number gain See cases [RCV000510919] Chr17:73951701..81041938 [GRCh37]
Chr17:17q25.1-25.3		 pathogenic
NM_004710.7(SYNGR2):c.412G>A (p.Val138Met) single nucleotide variant Inborn genetic diseases [RCV003257362] Chr17:78171584 [GRCh38]
Chr17:76167665 [GRCh37]
Chr17:17q25.3		 uncertain significance
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17q24.2-25.3(chr17:67002415-81041938)x3 copy number gain See cases [RCV000512573] Chr17:67002415..81041938 [GRCh37]
Chr17:17q24.2-25.3		 pathogenic
GRCh37/hg19 17q24.1-25.3(chr17:63689671-81041938)x3 copy number gain not provided [RCV000683952] Chr17:63689671..81041938 [GRCh37]
Chr17:17q24.1-25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
NM_004710.7(SYNGR2):c.88G>A (p.Ala30Thr) single nucleotide variant Inborn genetic diseases [RCV003268332] Chr17:78168704 [GRCh38]
Chr17:76164785 [GRCh37]
Chr17:17q25.3		 uncertain significance
GRCh37/hg19 17q24.1-25.3(chr17:62778720-81041938)x3 copy number gain not provided [RCV000849900] Chr17:62778720..81041938 [GRCh37]
Chr17:17q24.1-25.3		 pathogenic
GRCh37/hg19 17q25.1-25.3(chr17:73261871-78608763)x3 copy number gain not provided [RCV001006919] Chr17:73261871..78608763 [GRCh37]
Chr17:17q25.1-25.3		 pathogenic
GRCh37/hg19 17q25.1-25.3(chr17:73481509-81043199)x3 copy number gain not provided [RCV002276051] Chr17:73481509..81043199 [GRCh37]
Chr17:17q25.1-25.3		 pathogenic
NM_004710.7(SYNGR2):c.88G>T (p.Ala30Ser) single nucleotide variant Inborn genetic diseases [RCV002687767] Chr17:78168704 [GRCh38]
Chr17:76164785 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_004710.7(SYNGR2):c.635C>T (p.Ala212Val) single nucleotide variant Inborn genetic diseases [RCV002754373] Chr17:78171896 [GRCh38]
Chr17:76167977 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_004710.7(SYNGR2):c.178G>A (p.Val60Met) single nucleotide variant Inborn genetic diseases [RCV002891863] Chr17:78170895 [GRCh38]
Chr17:76166976 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_004710.7(SYNGR2):c.422G>A (p.Gly141Glu) single nucleotide variant Inborn genetic diseases [RCV003204849] Chr17:78171594 [GRCh38]
Chr17:76167675 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_004710.7(SYNGR2):c.331T>C (p.Phe111Leu) single nucleotide variant Inborn genetic diseases [RCV003183252] Chr17:78171048 [GRCh38]
Chr17:76167129 [GRCh37]
Chr17:17q25.3		 uncertain significance
NM_004710.7(SYNGR2):c.265G>A (p.Asp89Asn) single nucleotide variant Inborn genetic diseases [RCV003205793] Chr17:78170982 [GRCh38]
Chr17:76167063 [GRCh37]
Chr17:17q25.3		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:6810
Count of miRNA genes:989
Interacting mature miRNAs:1175
Transcripts:ENST00000225777, ENST00000585591, ENST00000588282, ENST00000589168, ENST00000589183, ENST00000589711, ENST00000590201, ENST00000591770, ENST00000592456
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
G43544  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371776,168,660 - 76,168,784UniSTSGRCh37
GRCh371530,338,141 - 30,338,266UniSTSGRCh37
Build 361528,125,433 - 28,125,558RGDNCBI36
Celera1772,765,091 - 72,765,215UniSTS
Celera157,980,190 - 7,980,315RGD
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map17q25.3UniSTS
HuRef1771,592,792 - 71,592,916UniSTS
HuRef158,005,413 - 8,005,538UniSTS
D1S1425  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map4q21.23UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map6q25.2-q25.3UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map2p23-p22UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map17q22-q23UniSTS
Cytogenetic Map2p11.1UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map2p12-p11.2UniSTS
Cytogenetic Map3q11.1UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map1p21.3UniSTS
Cytogenetic Map1q32.2UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map18p11.3-p11.2UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map17q22-q23.2UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map4q21.21UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map3p21.1-p14.2UniSTS
Cytogenetic Map2p24UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map6q25.2-q27UniSTS
Cytogenetic Map12q24.32UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map15q11-q12UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map15q21.1-q21.2UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map12p13.33UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map4q31.21UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map1q24.2UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map10p15-p14UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map3q12.1UniSTS
Cytogenetic Map15q24-q25UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map6pter-p12.1UniSTS
Cytogenetic Map6q16UniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map11q23.1-q23.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map16q24.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic MapXq21.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 1 1 9
Medium 2436 2924 1719 619 1933 460 4350 2148 2985 417 1449 1612 175 1 1204 2788 6 2
Low 2 67 7 5 17 5 7 49 749 2 2 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001320523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_004710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC021593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ002308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ002310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ002312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY358916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF198109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI160076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF122406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY054610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000225777   ⟹   ENSP00000225777
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1778,168,581 - 78,172,720 (+)Ensembl
RefSeq Acc Id: ENST00000585591   ⟹   ENSP00000465678
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1778,168,594 - 78,173,335 (+)Ensembl
RefSeq Acc Id: ENST00000588282   ⟹   ENSP00000467600
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1778,168,611 - 78,172,719 (+)Ensembl
RefSeq Acc Id: ENST00000589168   ⟹   ENSP00000466204
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1778,168,618 - 78,173,527 (+)Ensembl
RefSeq Acc Id: ENST00000589183   ⟹   ENSP00000466942
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1778,168,602 - 78,171,977 (+)Ensembl
RefSeq Acc Id: ENST00000589711   ⟹   ENSP00000466032
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1778,168,604 - 78,173,527 (+)Ensembl
RefSeq Acc Id: ENST00000590201   ⟹   ENSP00000465005
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1778,169,158 - 78,173,527 (+)Ensembl
RefSeq Acc Id: ENST00000591770
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1778,168,610 - 78,171,574 (+)Ensembl
RefSeq Acc Id: ENST00000592456
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1778,169,684 - 78,172,719 (+)Ensembl
RefSeq Acc Id: NM_001320523   ⟹   NP_001307452
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381778,168,545 - 78,172,964 (+)NCBI
CHM1_11776,229,163 - 76,233,546 (+)NCBI
T2T-CHM13v2.01779,062,641 - 79,067,058 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363778   ⟹   NP_001350707
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381778,168,545 - 78,172,964 (+)NCBI
T2T-CHM13v2.01779,062,641 - 79,067,058 (+)NCBI
Sequence:
RefSeq Acc Id: NM_004710   ⟹   NP_004701
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381778,168,581 - 78,172,720 (+)NCBI
GRCh371776,164,632 - 76,169,009 (+)NCBI
Build 361773,676,266 - 73,680,604 (+)NCBI Archive
Celera1772,761,072 - 72,765,440 (+)RGD
HuRef1771,588,828 - 71,593,141 (+)ENTREZGENE
CHM1_11776,229,163 - 76,233,546 (+)NCBI
T2T-CHM13v2.01779,062,677 - 79,066,814 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_004701   ⟸   NM_004710
- Peptide Label: isoform 1
- UniProtKB: A8MWL6 (UniProtKB/Swiss-Prot),   Q3KQZ2 (UniProtKB/Swiss-Prot),   O43762 (UniProtKB/Swiss-Prot),   Q658S7 (UniProtKB/Swiss-Prot),   O43760 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001307452   ⟸   NM_001320523
- Peptide Label: isoform 2
- UniProtKB: K7ELS8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001350707   ⟸   NM_001363778
- Peptide Label: isoform 3
RefSeq Acc Id: ENSP00000465678   ⟸   ENST00000585591
RefSeq Acc Id: ENSP00000467600   ⟸   ENST00000588282
RefSeq Acc Id: ENSP00000466942   ⟸   ENST00000589183
RefSeq Acc Id: ENSP00000466204   ⟸   ENST00000589168
RefSeq Acc Id: ENSP00000466032   ⟸   ENST00000589711
RefSeq Acc Id: ENSP00000465005   ⟸   ENST00000590201
RefSeq Acc Id: ENSP00000225777   ⟸   ENST00000225777
Protein Domains
MARVEL

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O43760-F1-model_v2 AlphaFold O43760 1-224 view protein structure

Promoters
RGD ID:6794602
Promoter ID:HG_KWN:27241
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_004710,   UC002JUT.2,   UC002JUV.1,   UC010DHI.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361773,676,201 - 73,676,757 (+)MPROMDB
RGD ID:6811360
Promoter ID:HG_ACW:36570
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   Lymphoblastoid
Transcripts:SYNGR2.FAPR07-UNSPLICED
Position:
Human AssemblyChrPosition (strand)Source
Build 361773,676,536 - 73,677,036 (+)MPROMDB
RGD ID:7236499
Promoter ID:EPDNEW_H23995
Type:initiation region
Name:SYNGR2_1
Description:synaptogyrin 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381778,168,581 - 78,168,641EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:11499 AgrOrtholog
COSMIC SYNGR2 COSMIC
Ensembl Genes ENSG00000108639 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000225777 ENTREZGENE
  ENST00000225777.8 UniProtKB/Swiss-Prot
  ENST00000585591.5 UniProtKB/Swiss-Prot
  ENST00000588282 ENTREZGENE
  ENST00000588282.5 UniProtKB/Swiss-Prot
  ENST00000589168 ENTREZGENE
  ENST00000589168.1 UniProtKB/TrEMBL
  ENST00000589183.1 UniProtKB/TrEMBL
  ENST00000589711.1 UniProtKB/TrEMBL
  ENST00000590201.1 UniProtKB/TrEMBL
GTEx ENSG00000108639 GTEx
HGNC ID HGNC:11499 ENTREZGENE
Human Proteome Map SYNGR2 Human Proteome Map
InterPro Marvel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Synaptogyrin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:9144 UniProtKB/Swiss-Prot
NCBI Gene 9144 ENTREZGENE
OMIM 603926 OMIM
PANTHER PTHR10838 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNAPTOGYRIN-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNAPTOGYRIN-2 LIKE PROTEIN-RELATED UniProtKB/Swiss-Prot
Pfam MARVEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA36281 PharmGKB
PIRSF Synaptogyrin UniProtKB/Swiss-Prot
PROSITE MARVEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A8MWL6 ENTREZGENE
  K7EJ35_HUMAN UniProtKB/TrEMBL
  K7ELD9_HUMAN UniProtKB/TrEMBL
  K7ELS8 ENTREZGENE, UniProtKB/TrEMBL
  K7ENG9_HUMAN UniProtKB/TrEMBL
  O43760 ENTREZGENE
  O43762 ENTREZGENE
  Q3KQZ2 ENTREZGENE
  Q658S7 ENTREZGENE
  SNG2_HUMAN UniProtKB/Swiss-Prot
  SNG2L_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A0A024R8P0 UniProtKB/TrEMBL
  O43762 UniProtKB/Swiss-Prot
  Q3KQZ2 UniProtKB/Swiss-Prot
  Q658S7 UniProtKB/Swiss-Prot