Arfgap1 (ADP-ribosylation factor GTPase activating protein 1) - Rat Genome Database

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Gene: Arfgap1 (ADP-ribosylation factor GTPase activating protein 1) Mus musculus
Analyze
Symbol: Arfgap1
Name: ADP-ribosylation factor GTPase activating protein 1
RGD ID: 732019
MGI Page MGI
Description: Predicted to enable GTPase activator activity. Acts upstream of or within regulation of endocytosis. Located in postsynaptic density. Is expressed in axial skeleton; craniocervical region bone; inner ear; lower jaw mesenchyme; and neocortex. Orthologous to human ARFGAP1 (ADP ribosylation factor GTPase activating protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ADP-ribosylation factor 1 GTPase activating protein; ADP-ribosylation factor 1 GTPase-activating protein; ADP-ribosylation factor GTPase-activating protein 1; AI115377; ARF GAP 1; ARF1 GAP; ARF1-directed GTPase-activating protein; Arf1gap
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392180,608,290 - 180,624,319 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2180,609,018 - 180,624,319 (+)EnsemblGRCm39 Ensembl
GRCm382180,967,225 - 180,982,526 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,967,225 - 180,982,526 (+)EnsemblGRCm38mm10GRCm38
MGSCv372180,701,930 - 180,717,229 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362180,896,677 - 180,911,850 (+)NCBIMGSCv36mm8
Celera2185,053,714 - 185,069,012 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12376537   PMID:12477932   PMID:12700166   PMID:14610273   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:17114649   PMID:17967808   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22363216   PMID:22423108   PMID:22794259   PMID:24792215  
PMID:27113764   PMID:29240824   PMID:30995482   PMID:32325033   PMID:32554809   PMID:36417873  


Genomics

Comparative Map Data
Arfgap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392180,608,290 - 180,624,319 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2180,609,018 - 180,624,319 (+)EnsemblGRCm39 Ensembl
GRCm382180,967,225 - 180,982,526 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,967,225 - 180,982,526 (+)EnsemblGRCm38mm10GRCm38
MGSCv372180,701,930 - 180,717,229 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362180,896,677 - 180,911,850 (+)NCBIMGSCv36mm8
Celera2185,053,714 - 185,069,012 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.53NCBI
ARFGAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382063,272,813 - 63,289,790 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2063,272,785 - 63,289,790 (+)EnsemblGRCh38hg38GRCh38
GRCh372061,904,165 - 61,921,142 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362061,374,610 - 61,391,587 (+)NCBINCBI36Build 36hg18NCBI36
Build 342061,374,609 - 61,391,587NCBI
Celera2058,581,641 - 58,598,618 (+)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2058,629,588 - 58,646,600 (+)NCBIHuRef
CHM1_12061,805,186 - 61,822,225 (+)NCBICHM1_1
T2T-CHM13v2.02065,078,685 - 65,095,673 (+)NCBIT2T-CHM13v2.0
Arfgap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,462,125 - 188,477,515 (+)NCBIGRCr8
mRatBN7.23168,084,560 - 168,099,948 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3168,084,614 - 168,099,933 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3172,464,963 - 172,479,000 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03181,424,054 - 181,438,091 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03178,085,603 - 178,099,635 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03176,475,847 - 176,490,642 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,475,893 - 176,489,925 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,185,674 - 180,201,025 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,075,313 - 170,100,744 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,981,348 - 170,006,780 (+)NCBI
Celera3164,486,283 - 164,500,316 (-)NCBICelera
Cytogenetic Map3q43NCBI
Arfgap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528877,073 - 893,484 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955528878,837 - 893,427 (-)NCBIChiLan1.0ChiLan1.0
ARFGAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22169,061,683 - 69,082,400 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12069,053,689 - 69,071,614 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02059,656,731 - 59,674,802 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12061,197,583 - 61,214,635 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2061,197,583 - 61,214,635 (+)Ensemblpanpan1.1panPan2
ARFGAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,983,944 - 46,995,552 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2446,983,939 - 46,995,548 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2446,167,782 - 46,179,384 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,937,705 - 47,949,300 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,937,684 - 47,949,305 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,952,991 - 46,964,587 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02447,077,281 - 47,088,873 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,833,394 - 47,844,998 (+)NCBIUU_Cfam_GSD_1.0
Arfgap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,174,022 - 195,187,226 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651410,627,639 - 10,640,869 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651410,627,700 - 10,641,157 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARFGAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,380,091 - 62,391,856 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,380,060 - 62,391,836 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ARFGAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12918,508 - 936,175 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2917,479 - 936,138 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605048,561,151 - 48,579,371 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arfgap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474128,971,239 - 28,986,717 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474128,971,320 - 28,986,699 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arfgap1
291 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3885
Count of miRNA genes:675
Interacting mature miRNAs:857
Transcripts:ENSMUST00000029092, ENSMUST00000108859, ENSMUST00000108860, ENSMUST00000108861, ENSMUST00000108862, ENSMUST00000132627, ENSMUST00000134519, ENSMUST00000136590, ENSMUST00000138706, ENSMUST00000145629, ENSMUST00000148908, ENSMUST00000150507, ENSMUST00000184394, ENSMUST00000185115
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162433493181755017Mouse
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163486407181755017Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163486407181755017Mouse
1300676Prdt2_mprion disease incubation time 2 (mouse)Not determined2164515154181755017Mouse
1558748Vacq1_mvoluntary alcohol consumption QTL 1 (mouse)Not determined2178442338181515280Mouse

Markers in Region
RH135857  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382180,981,864 - 180,982,019UniSTSGRCm38
MGSCv372180,716,569 - 180,716,724UniSTSGRCm37
Celera2185,068,352 - 185,068,507UniSTS
Cytogenetic Map2H4UniSTS
cM Map2104.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001177706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001374670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001782401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ401461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX649560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY630306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ149044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ150232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000029092   ⟹   ENSMUSP00000029092
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2180,609,027 - 180,624,319 (+)Ensembl
GRCm38.p6 Ensembl2180,967,234 - 180,982,526 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108859   ⟹   ENSMUSP00000104487
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2180,609,093 - 180,624,104 (+)Ensembl
GRCm38.p6 Ensembl2180,967,300 - 180,982,311 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108860   ⟹   ENSMUSP00000104488
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2180,609,070 - 180,624,253 (+)Ensembl
GRCm38.p6 Ensembl2180,967,277 - 180,982,460 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108861   ⟹   ENSMUSP00000104489
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2180,609,038 - 180,623,493 (+)Ensembl
GRCm38.p6 Ensembl2180,967,245 - 180,981,700 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108862   ⟹   ENSMUSP00000104490
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2180,609,018 - 180,624,251 (+)Ensembl
GRCm38.p6 Ensembl2180,967,225 - 180,982,458 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132627
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2180,609,072 - 180,614,722 (+)Ensembl
GRCm38.p6 Ensembl2180,967,279 - 180,972,929 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134519
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2180,615,624 - 180,619,317 (+)Ensembl
GRCm38.p6 Ensembl2180,973,831 - 180,977,524 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136590
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2180,609,060 - 180,624,239 (+)Ensembl
GRCm38.p6 Ensembl2180,967,267 - 180,982,446 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138706
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2180,615,279 - 180,618,545 (+)Ensembl
GRCm38.p6 Ensembl2180,973,486 - 180,976,752 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145629
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2180,609,058 - 180,624,253 (+)Ensembl
GRCm38.p6 Ensembl2180,967,265 - 180,982,460 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148908
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2180,622,142 - 180,623,190 (+)Ensembl
GRCm38.p6 Ensembl2180,980,349 - 180,981,397 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150507
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2180,615,296 - 180,619,835 (+)Ensembl
GRCm38.p6 Ensembl2180,973,503 - 180,978,042 (+)Ensembl
RefSeq Acc Id: ENSMUST00000184394   ⟹   ENSMUSP00000138843
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2180,612,848 - 180,623,163 (+)Ensembl
GRCm38.p6 Ensembl2180,971,055 - 180,981,370 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185115   ⟹   ENSMUSP00000139222
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2180,612,833 - 180,623,266 (+)Ensembl
GRCm38.p6 Ensembl2180,971,040 - 180,981,473 (+)Ensembl
RefSeq Acc Id: NM_001177706   ⟹   NP_001171177
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,018 - 180,624,317 (+)NCBI
GRCm382180,967,225 - 180,982,524 (+)NCBI
MGSCv372180,701,930 - 180,717,229 (+)RGD
Celera2185,053,714 - 185,069,012 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177707   ⟹   NP_001171178
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,018 - 180,624,317 (+)NCBI
GRCm382180,967,225 - 180,982,524 (+)NCBI
MGSCv372180,701,930 - 180,717,229 (+)RGD
Celera2185,053,714 - 185,069,012 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177708   ⟹   NP_001171179
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,018 - 180,624,317 (+)NCBI
GRCm382180,967,225 - 180,982,524 (+)NCBI
MGSCv372180,701,930 - 180,717,229 (+)RGD
Celera2185,053,714 - 185,069,012 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177709   ⟹   NP_001171180
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,018 - 180,624,317 (+)NCBI
GRCm382180,967,225 - 180,982,524 (+)NCBI
MGSCv372180,701,930 - 180,717,229 (+)RGD
Celera2185,053,714 - 185,069,012 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177710   ⟹   NP_001171181
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,018 - 180,624,317 (+)NCBI
GRCm382180,967,225 - 180,982,524 (+)NCBI
MGSCv372180,701,930 - 180,717,229 (+)RGD
Celera2185,053,714 - 185,069,012 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001363035   ⟹   NP_001349964
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,018 - 180,624,317 (+)NCBI
GRCm382180,967,225 - 180,982,524 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363036   ⟹   NP_001349965
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,018 - 180,624,317 (+)NCBI
GRCm382180,967,225 - 180,982,524 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363037   ⟹   NP_001349966
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,018 - 180,624,317 (+)NCBI
GRCm382180,967,225 - 180,982,524 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001374670   ⟹   NP_001361599
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,032 - 180,624,319 (+)NCBI
GRCm382180,967,239 - 180,982,526 (+)NCBI
Sequence:
RefSeq Acc Id: NM_145760   ⟹   NP_665703
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,018 - 180,624,317 (+)NCBI
GRCm382180,967,225 - 180,982,524 (+)NCBI
MGSCv372180,701,930 - 180,717,229 (+)RGD
Celera2185,053,714 - 185,069,012 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006500594   ⟹   XP_006500657
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,020 - 180,624,253 (+)NCBI
GRCm382180,967,227 - 180,982,460 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011239936   ⟹   XP_011238238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,613,845 - 180,624,257 (+)NCBI
GRCm382180,972,052 - 180,982,526 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250844   ⟹   XP_030106704
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,022 - 180,624,316 (+)NCBI
GRCm382180,967,229 - 180,982,464 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250845   ⟹   XP_030106705
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,020 - 180,624,316 (+)NCBI
GRCm382180,967,227 - 180,982,460 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250846   ⟹   XP_030106706
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,029 - 180,624,257 (+)NCBI
GRCm382180,967,236 - 180,982,464 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250848   ⟹   XP_030106708
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,030 - 180,624,253 (+)NCBI
GRCm382180,967,237 - 180,982,460 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250850   ⟹   XP_030106710
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,031 - 180,624,316 (+)NCBI
GRCm382180,967,238 - 180,982,464 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250858   ⟹   XP_030106718
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,016 - 180,624,316 (+)NCBI
GRCm382180,967,237 - 180,982,464 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161736   ⟹   XP_036017629
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,608,290 - 180,624,319 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001782401
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392180,609,031 - 180,624,253 (+)NCBI
GRCm382180,967,605 - 180,982,460 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001171177 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171178 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171179 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171180 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171181 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349964 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349965 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349966 (Get FASTA)   NCBI Sequence Viewer  
  NP_001361599 (Get FASTA)   NCBI Sequence Viewer  
  NP_665703 (Get FASTA)   NCBI Sequence Viewer  
  XP_006500657 (Get FASTA)   NCBI Sequence Viewer  
  XP_011238238 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106704 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106705 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106706 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106708 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106710 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106718 (Get FASTA)   NCBI Sequence Viewer  
  XP_036017629 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH16228 (Get FASTA)   NCBI Sequence Viewer  
  AAH52922 (Get FASTA)   NCBI Sequence Viewer  
  AAH59817 (Get FASTA)   NCBI Sequence Viewer  
  BAC26883 (Get FASTA)   NCBI Sequence Viewer  
  BAC27002 (Get FASTA)   NCBI Sequence Viewer  
  BAC35231 (Get FASTA)   NCBI Sequence Viewer  
  BAE22128 (Get FASTA)   NCBI Sequence Viewer  
  BAE26720 (Get FASTA)   NCBI Sequence Viewer  
  BAE39994 (Get FASTA)   NCBI Sequence Viewer  
  BAE40469 (Get FASTA)   NCBI Sequence Viewer  
  CAC18721 (Get FASTA)   NCBI Sequence Viewer  
  EDL07365 (Get FASTA)   NCBI Sequence Viewer  
  EDL07366 (Get FASTA)   NCBI Sequence Viewer  
  EDL07367 (Get FASTA)   NCBI Sequence Viewer  
  EDL07368 (Get FASTA)   NCBI Sequence Viewer  
  EDL07369 (Get FASTA)   NCBI Sequence Viewer  
  EDL07370 (Get FASTA)   NCBI Sequence Viewer  
  EDL07371 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000029092
  ENSMUSP00000029092.7
  ENSMUSP00000104487
  ENSMUSP00000104487.2
  ENSMUSP00000104488
  ENSMUSP00000104488.2
  ENSMUSP00000104489
  ENSMUSP00000104489.2
  ENSMUSP00000104490
  ENSMUSP00000104490.2
  ENSMUSP00000138843
  ENSMUSP00000138843.2
  ENSMUSP00000139222
  ENSMUSP00000139222.2
GenBank Protein Q9EPJ9 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_665703   ⟸   NM_145760
- Peptide Label: isoform a
- UniProtKB: Q8BMM6 (UniProtKB/Swiss-Prot),   Q3TI52 (UniProtKB/Swiss-Prot),   A8WIS1 (UniProtKB/Swiss-Prot),   A8WIR9 (UniProtKB/Swiss-Prot),   Q8BMQ7 (UniProtKB/Swiss-Prot),   Q9EPJ9 (UniProtKB/Swiss-Prot),   Q6PB94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171178   ⟸   NM_001177707
- Peptide Label: isoform c
- UniProtKB: Q3TGS9 (UniProtKB/TrEMBL),   Q6PB94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171179   ⟸   NM_001177708
- Peptide Label: isoform c
- UniProtKB: Q3TGS9 (UniProtKB/TrEMBL),   Q6PB94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171180   ⟸   NM_001177709
- Peptide Label: isoform b
- UniProtKB: Q6PB94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171181   ⟸   NM_001177710
- Peptide Label: isoform d
- UniProtKB: Q05DE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171177   ⟸   NM_001177706
- Peptide Label: isoform b
- UniProtKB: Q6PB94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006500657   ⟸   XM_006500594
- Peptide Label: isoform X1
- UniProtKB: V9GXM1 (UniProtKB/TrEMBL),   Q6PB94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011238238   ⟸   XM_011239936
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: NP_001349966   ⟸   NM_001363037
- Peptide Label: isoform f
- UniProtKB: Q6PB94 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001349965   ⟸   NM_001363036
- Peptide Label: isoform e
- UniProtKB: V9GWV1 (UniProtKB/TrEMBL),   Q6PB94 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001349964   ⟸   NM_001363035
- Peptide Label: isoform e
- UniProtKB: V9GWV1 (UniProtKB/TrEMBL),   Q6PB94 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030106705   ⟸   XM_030250845
- Peptide Label: isoform X2
- UniProtKB: Q9EPJ9 (UniProtKB/Swiss-Prot),   Q8BMM6 (UniProtKB/Swiss-Prot),   Q3TI52 (UniProtKB/Swiss-Prot),   A8WIS1 (UniProtKB/Swiss-Prot),   A8WIR9 (UniProtKB/Swiss-Prot),   Q8BMQ7 (UniProtKB/Swiss-Prot),   Q6PB94 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030106704   ⟸   XM_030250844
- Peptide Label: isoform X2
- UniProtKB: Q9EPJ9 (UniProtKB/Swiss-Prot),   Q8BMM6 (UniProtKB/Swiss-Prot),   Q3TI52 (UniProtKB/Swiss-Prot),   A8WIS1 (UniProtKB/Swiss-Prot),   A8WIR9 (UniProtKB/Swiss-Prot),   Q8BMQ7 (UniProtKB/Swiss-Prot),   Q6PB94 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030106706   ⟸   XM_030250846
- Peptide Label: isoform X3
- UniProtKB: V9GWV1 (UniProtKB/TrEMBL),   Q6PB94 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030106718   ⟸   XM_030250858
- Peptide Label: isoform X5
- UniProtKB: Q6PB94 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030106708   ⟸   XM_030250848
- Peptide Label: isoform X4
- UniProtKB: Q3TGS9 (UniProtKB/TrEMBL),   Q6PB94 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030106710   ⟸   XM_030250850
- Peptide Label: isoform X5
- UniProtKB: Q6PB94 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001361599   ⟸   NM_001374670
- Peptide Label: isoform g
- UniProtKB: V9GXM1 (UniProtKB/TrEMBL),   Q6PB94 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000138843   ⟸   ENSMUST00000184394
RefSeq Acc Id: ENSMUSP00000029092   ⟸   ENSMUST00000029092
RefSeq Acc Id: ENSMUSP00000139222   ⟸   ENSMUST00000185115
RefSeq Acc Id: ENSMUSP00000104487   ⟸   ENSMUST00000108859
RefSeq Acc Id: ENSMUSP00000104488   ⟸   ENSMUST00000108860
RefSeq Acc Id: ENSMUSP00000104489   ⟸   ENSMUST00000108861
RefSeq Acc Id: ENSMUSP00000104490   ⟸   ENSMUST00000108862
RefSeq Acc Id: XP_036017629   ⟸   XM_036161736
- Peptide Label: isoform X2
- UniProtKB: Q9EPJ9 (UniProtKB/Swiss-Prot),   Q8BMM6 (UniProtKB/Swiss-Prot),   Q3TI52 (UniProtKB/Swiss-Prot),   A8WIS1 (UniProtKB/Swiss-Prot),   A8WIR9 (UniProtKB/Swiss-Prot),   Q8BMQ7 (UniProtKB/Swiss-Prot),   Q6PB94 (UniProtKB/TrEMBL)
Protein Domains
Arf-GAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EPJ9-F1-model_v2 AlphaFold Q9EPJ9 1-414 view protein structure

Promoters
RGD ID:6830800
Promoter ID:MM_KWN:33580
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000098981,   ENSMUST00000108862,   ENSMUST00000108863,   OTTMUST00000039493,   OTTMUST00000039495,   OTTMUST00000039502,   UC008OKL.1,   UC008OKM.1,   UC008OKO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362180,701,046 - 180,702,407 (+)MPROMDB
RGD ID:6830799
Promoter ID:MM_KWN:33581
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B6
Transcripts:OTTMUST00000039500,   OTTMUST00000039501
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362180,705,021 - 180,705,822 (+)MPROMDB
RGD ID:6830802
Promoter ID:MM_KWN:33582
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   MEF_B6
Transcripts:OTTMUST00000039503,   OTTMUST00000039504,   OTTMUST00000039505
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362180,707,921 - 180,708,822 (+)MPROMDB
RGD ID:6830803
Promoter ID:MM_KWN:33583
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:OTTMUST00000039506
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362180,714,126 - 180,715,047 (+)MPROMDB
RGD ID:6880100
Promoter ID:EPDNEW_M3501
Type:initiation region
Name:Arfgap1_1
Description:Mus musculus ADP-ribosylation factor GTPase activating protein1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382180,967,239 - 180,967,299EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2183559 AgrOrtholog
Ensembl Genes ENSMUSG00000027575 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029092 ENTREZGENE
  ENSMUST00000029092.13 UniProtKB/Swiss-Prot
  ENSMUST00000108859 ENTREZGENE
  ENSMUST00000108859.8 UniProtKB/Swiss-Prot
  ENSMUST00000108860 ENTREZGENE
  ENSMUST00000108860.8 UniProtKB/Swiss-Prot
  ENSMUST00000108861 ENTREZGENE
  ENSMUST00000108861.8 UniProtKB/TrEMBL
  ENSMUST00000108862 ENTREZGENE
  ENSMUST00000108862.8 UniProtKB/TrEMBL
  ENSMUST00000136590 ENTREZGENE
  ENSMUST00000184394 ENTREZGENE
  ENSMUST00000184394.2 UniProtKB/TrEMBL
  ENSMUST00000185115 ENTREZGENE
  ENSMUST00000185115.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.220.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARFGAP/RecO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ArfGAP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ArfGAP_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:228998 UniProtKB/Swiss-Prot
MGD MGI:2183559 ENTREZGENE
NCBI Gene 228998 ENTREZGENE
PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1 UniProtKB/Swiss-Prot
  ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1 UniProtKB/Swiss-Prot
  ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1 UniProtKB/TrEMBL
  ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1 UniProtKB/TrEMBL
Pfam ArfGap UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Arfgap1 PhenoGen
PRINTS REVINTRACTNG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ARFGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ArfGap UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57863 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A8WIR9 ENTREZGENE
  A8WIS1 ENTREZGENE
  ARFG1_MOUSE UniProtKB/Swiss-Prot
  Q05BC5_MOUSE UniProtKB/TrEMBL
  Q05DE0 ENTREZGENE, UniProtKB/TrEMBL
  Q3TGS9 ENTREZGENE, UniProtKB/TrEMBL
  Q3TI52 ENTREZGENE
  Q6PB94 ENTREZGENE, UniProtKB/TrEMBL
  Q8BMM6 ENTREZGENE
  Q8BMQ7 ENTREZGENE
  Q8BWB5_MOUSE UniProtKB/TrEMBL
  Q9EPJ9 ENTREZGENE
  V9GWV1 ENTREZGENE, UniProtKB/TrEMBL
  V9GXM1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A8WIR9 UniProtKB/Swiss-Prot
  A8WIS1 UniProtKB/Swiss-Prot
  Q3TI52 UniProtKB/Swiss-Prot
  Q8BMM6 UniProtKB/Swiss-Prot
  Q8BMQ7 UniProtKB/Swiss-Prot