ARFGAP1 (ADP ribosylation factor GTPase activating protein 1) - Rat Genome Database

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Gene: ARFGAP1 (ADP ribosylation factor GTPase activating protein 1) Canis lupus familiaris
Analyze
Symbol: ARFGAP1
Name: ADP ribosylation factor GTPase activating protein 1
RGD ID: 12061352
Description: ENCODES a protein that exhibits GTPase activator activity (inferred); INVOLVED IN regulation of endocytosis (ortholog); PARTICIPATES IN Arf family mediated signaling pathway; ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN Golgi membrane (ortholog); postsynaptic density (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ADP-ribosylation factor GTPase-activating protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,983,944 - 46,995,552 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2446,983,939 - 46,995,548 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2446,167,782 - 46,179,384 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,937,705 - 47,949,300 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,937,684 - 47,949,305 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,952,991 - 46,964,587 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02447,077,281 - 47,088,873 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,833,394 - 47,844,998 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi membrane  (IEA,ISO)
postsynaptic density  (ISO)
synapse  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARFGAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,983,944 - 46,995,552 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2446,983,939 - 46,995,548 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2446,167,782 - 46,179,384 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,937,705 - 47,949,300 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,937,684 - 47,949,305 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,952,991 - 46,964,587 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02447,077,281 - 47,088,873 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,833,394 - 47,844,998 (+)NCBIUU_Cfam_GSD_1.0
ARFGAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382063,272,813 - 63,289,790 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2063,272,785 - 63,289,790 (+)EnsemblGRCh38hg38GRCh38
GRCh372061,904,165 - 61,921,142 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362061,374,610 - 61,391,587 (+)NCBINCBI36Build 36hg18NCBI36
Build 342061,374,609 - 61,391,587NCBI
Celera2058,581,641 - 58,598,618 (+)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2058,629,588 - 58,646,600 (+)NCBIHuRef
CHM1_12061,805,186 - 61,822,225 (+)NCBICHM1_1
T2T-CHM13v2.02065,078,685 - 65,095,673 (+)NCBIT2T-CHM13v2.0
Arfgap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392180,608,290 - 180,624,319 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2180,609,018 - 180,624,319 (+)EnsemblGRCm39 Ensembl
GRCm382180,967,225 - 180,982,526 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,967,225 - 180,982,526 (+)EnsemblGRCm38mm10GRCm38
MGSCv372180,701,930 - 180,717,229 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362180,896,677 - 180,911,850 (+)NCBIMGSCv36mm8
Celera2185,053,714 - 185,069,012 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.53NCBI
Arfgap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,462,125 - 188,477,515 (+)NCBIGRCr8
mRatBN7.23168,084,560 - 168,099,948 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3168,084,614 - 168,099,933 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3172,464,963 - 172,479,000 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03181,424,054 - 181,438,091 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03178,085,603 - 178,099,635 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03176,475,847 - 176,490,642 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,475,893 - 176,489,925 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,185,674 - 180,201,025 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,075,313 - 170,100,744 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,981,348 - 170,006,780 (+)NCBI
Celera3164,486,283 - 164,500,316 (-)NCBICelera
Cytogenetic Map3q43NCBI
Arfgap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528877,073 - 893,484 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955528878,837 - 893,427 (-)NCBIChiLan1.0ChiLan1.0
ARFGAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22169,061,683 - 69,082,400 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12069,053,689 - 69,071,614 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02059,656,731 - 59,674,802 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12061,197,583 - 61,214,635 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2061,197,583 - 61,214,635 (+)Ensemblpanpan1.1panPan2
Arfgap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,174,022 - 195,187,226 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651410,627,639 - 10,640,869 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651410,627,700 - 10,641,157 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARFGAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,380,091 - 62,391,856 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,380,060 - 62,391,836 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ARFGAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12918,508 - 936,175 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2917,479 - 936,138 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605048,561,151 - 48,579,371 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arfgap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474128,971,239 - 28,986,717 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474128,971,320 - 28,986,699 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ARFGAP1
221 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005635281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005635282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005635283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005635284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005635285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005635286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022409084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038457895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000039203   ⟹   ENSCAFP00000035023
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2446,983,939 - 46,995,548 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000071235   ⟹   ENSCAFP00000057058
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2446,983,939 - 46,995,548 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000083355   ⟹   ENSCAFP00000063740
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2446,986,880 - 46,995,548 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000086766   ⟹   ENSCAFP00000048077
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2446,983,939 - 46,995,548 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000093380   ⟹   ENSCAFP00000061663
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2446,987,508 - 46,995,548 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845034580   ⟹   ENSCAFP00845027092
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2447,937,684 - 47,949,305 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845034694   ⟹   ENSCAFP00845027173
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2447,937,684 - 47,949,305 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845034827   ⟹   ENSCAFP00845027279
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2447,937,684 - 47,949,305 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845034946   ⟹   ENSCAFP00845027367
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2447,940,629 - 47,949,305 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845035088   ⟹   ENSCAFP00845027469
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2447,941,257 - 47,949,305 (+)Ensembl
RefSeq Acc Id: XM_005635281   ⟹   XP_005635338
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12446,983,944 - 46,995,552 (+)NCBI
Dog10K_Boxer_Tasha2446,167,782 - 46,179,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005635282   ⟹   XP_005635339
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12446,983,944 - 46,995,552 (+)NCBI
Dog10K_Boxer_Tasha2446,167,782 - 46,179,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005635283   ⟹   XP_005635340
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12446,983,944 - 46,995,552 (+)NCBI
Dog10K_Boxer_Tasha2446,167,782 - 46,179,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005635284   ⟹   XP_005635341
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12446,983,944 - 46,995,552 (+)NCBI
Dog10K_Boxer_Tasha2446,167,782 - 46,179,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005635285   ⟹   XP_005635342
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12446,983,944 - 46,995,552 (+)NCBI
Dog10K_Boxer_Tasha2446,167,782 - 46,179,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005635286   ⟹   XP_005635343
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12446,983,944 - 46,995,552 (+)NCBI
Dog10K_Boxer_Tasha2446,167,782 - 46,179,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038434322   ⟹   XP_038290250
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02447,937,705 - 47,949,300 (+)NCBI
RefSeq Acc Id: XM_038434323   ⟹   XP_038290251
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02447,937,705 - 47,949,300 (+)NCBI
RefSeq Acc Id: XM_038434324   ⟹   XP_038290252
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02447,937,705 - 47,949,300 (+)NCBI
RefSeq Acc Id: XM_038434325   ⟹   XP_038290253
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02447,937,705 - 47,949,300 (+)NCBI
RefSeq Acc Id: XM_038434326   ⟹   XP_038290254
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02447,937,705 - 47,949,300 (+)NCBI
RefSeq Acc Id: XM_038434327   ⟹   XP_038290255
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02447,937,705 - 47,949,300 (+)NCBI
RefSeq Acc Id: XM_038434328   ⟹   XP_038290256
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02447,941,257 - 47,949,300 (+)NCBI
RefSeq Acc Id: XM_038457895   ⟹   XP_038313823
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2446,171,341 - 46,179,384 (+)NCBI
RefSeq Acc Id: XM_038509476   ⟹   XP_038365404
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12446,952,991 - 46,964,587 (+)NCBI
RefSeq Acc Id: XM_038509477   ⟹   XP_038365405
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12446,952,991 - 46,964,587 (+)NCBI
RefSeq Acc Id: XM_038509478   ⟹   XP_038365406
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12446,952,991 - 46,964,587 (+)NCBI
RefSeq Acc Id: XM_038509479   ⟹   XP_038365407
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12446,952,991 - 46,964,587 (+)NCBI
RefSeq Acc Id: XM_038509480   ⟹   XP_038365408
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12446,952,991 - 46,964,587 (+)NCBI
RefSeq Acc Id: XM_038509481   ⟹   XP_038365409
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12446,952,991 - 46,964,587 (+)NCBI
RefSeq Acc Id: XM_038509482   ⟹   XP_038365410
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12446,956,545 - 46,964,587 (+)NCBI
RefSeq Acc Id: XM_038572833   ⟹   XP_038428761
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02447,833,394 - 47,844,998 (+)NCBI
RefSeq Acc Id: XM_038572834   ⟹   XP_038428762
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02447,833,394 - 47,844,998 (+)NCBI
RefSeq Acc Id: XM_038572835   ⟹   XP_038428763
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02447,833,394 - 47,844,998 (+)NCBI
RefSeq Acc Id: XM_038572836   ⟹   XP_038428764
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02447,833,394 - 47,844,998 (+)NCBI
RefSeq Acc Id: XM_038572837   ⟹   XP_038428765
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02447,833,394 - 47,844,998 (+)NCBI
RefSeq Acc Id: XM_038572838   ⟹   XP_038428766
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02447,833,394 - 47,844,998 (+)NCBI
RefSeq Acc Id: XM_038572839   ⟹   XP_038428767
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02447,836,955 - 47,844,998 (+)NCBI
RefSeq Acc Id: XM_038637110   ⟹   XP_038493038
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02447,077,281 - 47,088,873 (+)NCBI
RefSeq Acc Id: XM_038637111   ⟹   XP_038493039
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02447,077,281 - 47,088,873 (+)NCBI
RefSeq Acc Id: XM_038637112   ⟹   XP_038493040
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02447,077,281 - 47,088,873 (+)NCBI
RefSeq Acc Id: XM_038637113   ⟹   XP_038493041
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02447,077,281 - 47,088,873 (+)NCBI
RefSeq Acc Id: XM_038637114   ⟹   XP_038493042
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02447,077,281 - 47,088,873 (+)NCBI
RefSeq Acc Id: XM_038637115   ⟹   XP_038493043
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02447,077,281 - 47,088,873 (+)NCBI
RefSeq Acc Id: XM_038637116   ⟹   XP_038493044
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02447,080,829 - 47,088,873 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005635338 (Get FASTA)   NCBI Sequence Viewer  
  XP_005635339 (Get FASTA)   NCBI Sequence Viewer  
  XP_005635340 (Get FASTA)   NCBI Sequence Viewer  
  XP_005635341 (Get FASTA)   NCBI Sequence Viewer  
  XP_005635342 (Get FASTA)   NCBI Sequence Viewer  
  XP_005635343 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290250 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290251 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290252 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290253 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290254 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290255 (Get FASTA)   NCBI Sequence Viewer  
  XP_038290256 (Get FASTA)   NCBI Sequence Viewer  
  XP_038313823 (Get FASTA)   NCBI Sequence Viewer  
  XP_038365404 (Get FASTA)   NCBI Sequence Viewer  
  XP_038365405 (Get FASTA)   NCBI Sequence Viewer  
  XP_038365406 (Get FASTA)   NCBI Sequence Viewer  
  XP_038365407 (Get FASTA)   NCBI Sequence Viewer  
  XP_038365408 (Get FASTA)   NCBI Sequence Viewer  
  XP_038365409 (Get FASTA)   NCBI Sequence Viewer  
  XP_038365410 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428761 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428762 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428763 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428764 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428765 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428766 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428767 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493038 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493039 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493040 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493041 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493042 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493043 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493044 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000035023.3
  ENSCAFP00000048077.1
  ENSCAFP00000057058.2
  ENSCAFP00000061663.1
  ENSCAFP00000063740.1
  ENSCAFP00030017528.1
  ENSCAFP00030017665.1
  ENSCAFP00030017787.1
  ENSCAFP00030017903.1
  ENSCAFP00030017999.1
  ENSCAFP00030018092.1
  ENSCAFP00030018163.1
  ENSCAFP00040039173.1
  ENSCAFP00040039208.1
  ENSCAFP00040039331.1
  ENSCAFP00040039354.1
  ENSCAFP00040039366.1
  ENSCAFP00845027092
  ENSCAFP00845027092.1
  ENSCAFP00845027173
  ENSCAFP00845027173.1
  ENSCAFP00845027279
  ENSCAFP00845027279.1
  ENSCAFP00845027367.1
  ENSCAFP00845027469
  ENSCAFP00845027469.1
Reference Protein Sequences
RefSeq Acc Id: XP_005635338   ⟸   XM_005635281
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TN84 (UniProtKB/TrEMBL),   A0A8I3NZC2 (UniProtKB/TrEMBL),   A0A8C0N661 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005635340   ⟸   XM_005635283
- Peptide Label: isoform X3
- UniProtKB: A0A8C0N661 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005635341   ⟸   XM_005635284
- Peptide Label: isoform X4
- UniProtKB: A0A8C0TPJ7 (UniProtKB/TrEMBL),   A0A8I3P053 (UniProtKB/TrEMBL),   A0A8C0N661 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005635339   ⟸   XM_005635282
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JKG6 (UniProtKB/TrEMBL),   A0A8C0Z5W3 (UniProtKB/TrEMBL),   A0A8I3P663 (UniProtKB/TrEMBL),   A0A8C0N661 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005635342   ⟸   XM_005635285
- Peptide Label: isoform X5
- UniProtKB: A0A8C0JIZ3 (UniProtKB/TrEMBL),   A0A8C0N661 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005635343   ⟸   XM_005635286
- Peptide Label: isoform X6
- UniProtKB: A0A8C0N661 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000035023   ⟸   ENSCAFT00000039203
RefSeq Acc Id: ENSCAFP00000063740   ⟸   ENSCAFT00000083355
RefSeq Acc Id: ENSCAFP00000061663   ⟸   ENSCAFT00000093380
RefSeq Acc Id: ENSCAFP00000048077   ⟸   ENSCAFT00000086766
RefSeq Acc Id: ENSCAFP00000057058   ⟸   ENSCAFT00000071235
RefSeq Acc Id: XP_038365404   ⟸   XM_038509476
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038365406   ⟸   XM_038509478
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038365407   ⟸   XM_038509479
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038365405   ⟸   XM_038509477
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038365408   ⟸   XM_038509480
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038365409   ⟸   XM_038509481
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038365410   ⟸   XM_038509482
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038493038   ⟸   XM_038637110
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038493040   ⟸   XM_038637112
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038493041   ⟸   XM_038637113
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038493039   ⟸   XM_038637111
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038493042   ⟸   XM_038637114
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038493043   ⟸   XM_038637115
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038493044   ⟸   XM_038637116
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038290250   ⟸   XM_038434322
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TN84 (UniProtKB/TrEMBL),   A0A8I3NZC2 (UniProtKB/TrEMBL),   A0A8C0N661 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290252   ⟸   XM_038434324
- Peptide Label: isoform X3
- UniProtKB: A0A8C0N661 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290253   ⟸   XM_038434325
- Peptide Label: isoform X4
- UniProtKB: A0A8C0TPJ7 (UniProtKB/TrEMBL),   A0A8I3P053 (UniProtKB/TrEMBL),   A0A8C0N661 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290251   ⟸   XM_038434323
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JKG6 (UniProtKB/TrEMBL),   A0A8C0Z5W3 (UniProtKB/TrEMBL),   A0A8I3P663 (UniProtKB/TrEMBL),   A0A8C0N661 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290254   ⟸   XM_038434326
- Peptide Label: isoform X5
- UniProtKB: A0A8C0JIZ3 (UniProtKB/TrEMBL),   A0A8C0N661 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290255   ⟸   XM_038434327
- Peptide Label: isoform X6
- UniProtKB: A0A8C0N661 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038290256   ⟸   XM_038434328
- Peptide Label: isoform X7
- UniProtKB: A0A8C0MWW9 (UniProtKB/TrEMBL),   A0A8I3S468 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038313823   ⟸   XM_038457895
- Peptide Label: isoform X7
- UniProtKB: A0A8C0MWW9 (UniProtKB/TrEMBL),   A0A8I3S468 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428761   ⟸   XM_038572833
- Peptide Label: isoform X1
- UniProtKB: A0A8C0N661 (UniProtKB/TrEMBL),   A0A8C0TN84 (UniProtKB/TrEMBL),   A0A8I3NZC2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428763   ⟸   XM_038572835
- Peptide Label: isoform X3
- UniProtKB: A0A8C0N661 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428764   ⟸   XM_038572836
- Peptide Label: isoform X4
- UniProtKB: A0A8C0N661 (UniProtKB/TrEMBL),   A0A8C0TPJ7 (UniProtKB/TrEMBL),   A0A8I3P053 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428762   ⟸   XM_038572834
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JKG6 (UniProtKB/TrEMBL),   A0A8C0N661 (UniProtKB/TrEMBL),   A0A8C0Z5W3 (UniProtKB/TrEMBL),   A0A8I3P663 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428765   ⟸   XM_038572837
- Peptide Label: isoform X5
- UniProtKB: A0A8C0JIZ3 (UniProtKB/TrEMBL),   A0A8C0N661 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428766   ⟸   XM_038572838
- Peptide Label: isoform X6
- UniProtKB: A0A8C0N661 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428767   ⟸   XM_038572839
- Peptide Label: isoform X7
- UniProtKB: A0A8C0MWW9 (UniProtKB/TrEMBL),   A0A8I3S468 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845027469   ⟸   ENSCAFT00845035088
RefSeq Acc Id: ENSCAFP00845027367   ⟸   ENSCAFT00845034946
RefSeq Acc Id: ENSCAFP00845027173   ⟸   ENSCAFT00845034694
RefSeq Acc Id: ENSCAFP00845027279   ⟸   ENSCAFT00845034827
RefSeq Acc Id: ENSCAFP00845027092   ⟸   ENSCAFT00845034580
Protein Domains
Arf-GAP

Promoters
RGD ID:13687683
Promoter ID:EPDNEW_C5753
Type:initiation region
Name:ARFGAP1_1
Description:ADP ribosylation factor GTPase activating protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12446,983,914 - 46,983,974EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012815 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030010543 UniProtKB/TrEMBL
  ENSCAFG00040023932 UniProtKB/TrEMBL
  ENSCAFG00845019425 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000039203.4 UniProtKB/TrEMBL
  ENSCAFT00000071235.2 UniProtKB/TrEMBL
  ENSCAFT00000083355.2 UniProtKB/TrEMBL
  ENSCAFT00000086766.2 UniProtKB/TrEMBL
  ENSCAFT00000093380.2 UniProtKB/TrEMBL
  ENSCAFT00030020102.1 UniProtKB/TrEMBL
  ENSCAFT00030020256.1 UniProtKB/TrEMBL
  ENSCAFT00030020389.1 UniProtKB/TrEMBL
  ENSCAFT00030020525.1 UniProtKB/TrEMBL
  ENSCAFT00030020641.1 UniProtKB/TrEMBL
  ENSCAFT00030020745.1 UniProtKB/TrEMBL
  ENSCAFT00030020822.1 UniProtKB/TrEMBL
  ENSCAFT00040044839.1 UniProtKB/TrEMBL
  ENSCAFT00040044877.1 UniProtKB/TrEMBL
  ENSCAFT00040045012.1 UniProtKB/TrEMBL
  ENSCAFT00040045037.1 UniProtKB/TrEMBL
  ENSCAFT00040045048.1 UniProtKB/TrEMBL
  ENSCAFT00845034580 ENTREZGENE
  ENSCAFT00845034580.1 UniProtKB/TrEMBL
  ENSCAFT00845034694 ENTREZGENE
  ENSCAFT00845034694.1 UniProtKB/TrEMBL
  ENSCAFT00845034827 ENTREZGENE
  ENSCAFT00845034827.1 UniProtKB/TrEMBL
  ENSCAFT00845034946.1 UniProtKB/TrEMBL
  ENSCAFT00845035088 ENTREZGENE
  ENSCAFT00845035088.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.220.150 UniProtKB/TrEMBL
InterPro ARFGAP/RecO UniProtKB/TrEMBL
  ArfGAP_dom UniProtKB/TrEMBL
  ArfGAP_dom_sf UniProtKB/TrEMBL
KEGG Report cfa:612498 UniProtKB/TrEMBL
NCBI Gene ARFGAP1 ENTREZGENE
PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1 UniProtKB/TrEMBL
  ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1 UniProtKB/TrEMBL
Pfam ArfGap UniProtKB/TrEMBL
PRINTS REVINTRACTNG UniProtKB/TrEMBL
PROSITE ARFGAP UniProtKB/TrEMBL
SMART ArfGap UniProtKB/TrEMBL
Superfamily-SCOP SSF57863 UniProtKB/TrEMBL
UniProt A0A8C0JIZ3 ENTREZGENE
  A0A8C0JKG6 ENTREZGENE
  A0A8C0MWW9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0MZ98_CANLF UniProtKB/TrEMBL
  A0A8C0N0U5_CANLF UniProtKB/TrEMBL
  A0A8C0N2D8_CANLF UniProtKB/TrEMBL
  A0A8C0N2Y7_CANLF UniProtKB/TrEMBL
  A0A8C0N5Y6_CANLF UniProtKB/TrEMBL
  A0A8C0N661 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TN84 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TPJ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z5W3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NZC2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P053 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P663 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PAP8_CANLF UniProtKB/TrEMBL
  A0A8I3S468 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38032 ENTREZGENE